Microarray experiments to specifically-expressed genes

GSM ID GSM131317
Assay name AtGen_6-3321_Saltstress-Roots-3.0h_Rep1
GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
618.5100.068.9At3g63060825481EDL3 (EID1-like 3)F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
379.9100.055.4At1g32970840191subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFMO.I.C.G.H.G.
320.1100.052.2At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
303.4100.0100.0At2g26380817178disease resistance protein-related / LRR protein-relatedF:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
296.9100.0119.3At3g06490819827MYB108 (myb domain protein 108)putative transcription factor MYB108 (MYB108) mRNA,O.I.C.G.H.G.
269.1100.0134.8At3g48510824010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
234.2100.0101.2At1g49450841369transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
221.3100.0116.8At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
219.9100.093.9At4g20000827745VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
206.3100.0124.1At4g37710829927VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
191.8100.065.5At3g23240821902ERF1 (ETHYLENE RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.O.I.C.G.H.G.
165.1100.0243.4At2g32020817762GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:response to abscisic acid stimulus, metabolic process;C:cellular_component unknown;BOFPAVMO.I.C.G.H.G.
163.599.973.4At3g23230821901ethylene-responsive factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
161.299.993.9At4g28703828989-F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
143.999.986.3At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
143.399.958.8At3g60120825182BGLU27 (BETA GLUCOSIDASE 27)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
138.299.9139.3At3g22830821854AT-HSFA6Bmember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
132.599.945.4At3g55090824675ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPVO.I.C.G.H.G.
125.599.946.8At2g29480817497ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
125.199.988.1At5g66700836803HB53Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.O.I.C.G.H.G.
124.299.954.8At4g15120827178VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFAO.I.C.G.H.G.
123.799.9201.8At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
121.399.9200.8At2g18210816336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
107.999.915.3At4g11480826753protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
103.999.982.2At1g69920843328ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
103.099.9170.6At3g25250822119AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)Arabidopsis protein kinaseO.I.C.G.H.G.
100.399.9200.3At1g61340842428F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
97.699.923.5At3g53160824482UGT73C7 (UDP-glucosyl transferase 73C7)F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
95.199.966.1At3g28580822488AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAVO.I.C.G.H.G.
94.999.924.0At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.O.I.C.G.H.G.
93.199.955.7At5g52400835316CYP715A1member of CYP715AO.I.C.G.H.G.
91.599.9112.7At3g11840820357PUB24 (PLANT U-BOX 24)Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
90.499.949.8At4g15100827176scpl30 (serine carboxypeptidase-like 30)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
90.399.951.0At3g62100825383IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.O.I.C.G.H.G.
89.399.958.9At3g14440820667NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.O.I.C.G.H.G.
89.099.9103.5At1g80820844421CCR2 (CINNAMOYL COA REDUCTASE)Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.O.I.C.G.H.G.
88.599.9103.7At1g74590843799GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
86.899.9120.5At5g13080831147WRKY75WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.O.I.C.G.H.G.
83.899.942.5At5g22530832314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
82.399.936.9At5g10100830874trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
82.199.9179.8At5g54490835537PBP1 (PINOID-BINDING PROTEIN 1)Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.O.I.C.G.H.G.
81.799.9173.8At1g59590842249ZCF37ZCF37 mRNA, complete cdsO.I.C.G.H.G.
81.099.9201.7At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.C.G.H.G.
77.199.9166.2At2g44840819093ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
76.599.964.5At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
72.099.964.1At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
70.899.940.4At1g686903767664ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplastO.I.C.G.H.G.
70.299.943.8At3g25655822153IDL1 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 1)Similar to Inflorescence Deficient in Abscission (IDA). Involved in floral organ abscission.O.I.C.G.H.G.
69.299.933.2At3g23220821900DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
69.099.953.8At4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
68.599.9137.2At2g23270816859unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
67.899.9117.5At1g01480837082ACS2a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.O.I.C.G.H.G.
67.599.842.0At2g46150819222-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
67.299.851.7At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
67.099.865.8At5g59450836064scarecrow-like transcription factor 11 (SCL11)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;PBMOO.I.C.G.H.G.
66.499.885.5At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
65.899.817.3At5g41550834157disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
65.399.8219.0At1g32640840158MYC2Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light–mediated photomorphogenic growth and blue and far-red-light–regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.O.I.C.G.H.G.
65.299.830.3At5g58680835982armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
63.799.8127.8At5g64905836614PROPEP3 (Elicitor peptide 3 precursor)F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PMO.I.C.G.H.G.
63.799.855.4At2g47950819407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
61.499.864.0At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOO.I.C.G.H.G.
61.499.849.8At2g18550816370HB-2 (HOMEOBOX-2)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
61.399.8238.7At4g37370829891CYP81D8member of CYP81DO.I.C.G.H.G.
60.699.840.0At5g54230835511MYB49 (myb domain protein 49)Encodes a putative transcription factor (MYB49).O.I.C.G.H.G.
60.699.835.9At3g24310822019MYB305 (myb domain protein 305)snapdragon myb protein 305 homolog (myb)O.I.C.G.H.G.
60.599.8199.2At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
58.699.895.6At1g59740842267proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
57.799.840.2At2g32510817812MAPKKK17member of MEKK subfamilyO.I.C.G.H.G.
57.699.8257.6At4g11280826730ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6)encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene familyO.I.C.G.H.G.
57.599.8163.5At1g30370839917lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMVO.I.C.G.H.G.
57.299.860.3At5g66640836796DAR3 (DA1-RELATED PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
56.999.841.4At1g14550838017anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
56.999.833.2At4g11350826737transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
56.499.865.5At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
54.899.8257.9At3g50930824257BCS1 (CYTOCHROME BC1 SYNTHESIS)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAVO.I.C.G.H.G.
54.799.838.8At1g70130843349lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
54.499.860.3At5g10210830885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.499.859.3At3g18710821402PUB29 (PLANT U-BOX 29)Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
54.499.834.8At2g25460817084-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.799.879.9At3g53600824528zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMFO.I.C.G.H.G.
53.599.8111.8At5g28630832966glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
52.699.8148.8At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
52.199.814.2At5g48530834909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
51.699.8153.0At5g14730831325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
50.599.8242.6At2g26530817194AR781unknown functionO.I.C.G.H.G.
49.499.845.7At5g28610832960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBO.I.C.G.H.G.
49.299.844.8At3g57540824921remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
48.899.8151.0At1g68620843192hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
48.599.8117.3At1g35910840493trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFAO.I.C.G.H.G.
48.499.8140.3At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAO.I.C.G.H.G.
47.999.8206.8At1g28480839748GRX480Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.O.I.C.G.H.G.
47.799.859.6At3g49810824143U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBVO.I.C.G.H.G.
47.599.8167.3At2g35930818166PUB23 (PLANT U-BOX 23)Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
47.599.837.6At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
47.499.883.6At1g02520839353PGP11 (P-GLYCOPROTEIN 11)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
46.699.886.6At2g24570816993WRKY17member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.O.I.C.G.H.G.
46.199.888.9At3g02800821239phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBMO.I.C.G.H.G.
46.199.867.5At4g21390827891B120F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
46.099.855.6At1g35210840410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.



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