Microarray experiments to specifically-expressed genes

GSM ID GSM131313
Assay name AtGen_6-3221_Saltstress-Roots-1.0h_Rep1
GSE experiment GSE5623: AtGenExpress: Stress Treatments (Salt stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
68.599.952.8At3g57540824921remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
67.399.832.4At3g55090824675ATPase, coupled to transmembrane movement of substancesF:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPVO.I.C.G.H.G.
56.399.846.8At3g14440820667NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.O.I.C.G.H.G.
53.099.848.2At1g49450841369transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
52.499.821.1At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
51.799.838.1At2g32510817812MAPKKK17member of MEKK subfamilyO.I.C.G.H.G.
45.799.831.2At3g24310822019MYB305 (myb domain protein 305)snapdragon myb protein 305 homolog (myb)O.I.C.G.H.G.
42.099.853.0At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOO.I.C.G.H.G.
38.999.868.4At1g80820844421CCR2 (CINNAMOYL COA REDUCTASE)Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.O.I.C.G.H.G.
38.699.817.7At1g32970840191subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFMO.I.C.G.H.G.
33.199.7115.1At1g61340842428F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.199.7114.3At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
30.499.760.8At1g74590843799GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
29.899.7159.2At5g40390834037SIP1 (seed imbibition 1-like)Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.O.I.C.G.H.G.
29.799.798.9At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
29.799.712.5At5g53990835482glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFVO.I.C.G.H.G.
27.699.741.2At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
26.599.746.4At1g58340842203ZF14F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
26.499.742.2At3g48510824010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.099.711.2At1g53990841837GLIP3Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
25.199.613.9At3g63060825481EDL3 (EID1-like 3)F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
24.799.691.3At2g01150814644RHA2B (RING-H2 FINGER PROTEIN 2B)Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.O.I.C.G.H.G.
24.399.620.6At2g29480817497ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
24.099.625.2At5g54230835511MYB49 (myb domain protein 49)Encodes a putative transcription factor (MYB49).O.I.C.G.H.G.
24.099.624.1At4g15120827178VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFAO.I.C.G.H.G.
23.999.6156.1At1g62570842554FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
23.499.6112.8At3g13650820569disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
22.699.635.7At1g71400843481AtRLP12 (Receptor Like Protein 12)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
22.399.667.8At4g34000829547ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.O.I.C.G.H.G.
22.199.615.3At4g28110828927AtMYB41 (myb domain protein 41)Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.O.I.C.G.H.G.
21.299.629.1At4g20000827745VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.199.659.5At5g13080831147WRKY75WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.O.I.C.G.H.G.
20.999.621.2At5g22530832314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
20.799.6194.2At2g23170816849GH3.3encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
20.699.660.8At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
20.699.639.3At2g46270819235GBF3 (G-BOX BINDING FACTOR 3)encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.O.I.C.G.H.G.
20.099.619.2At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
19.899.687.8At2g30500817600kinase interacting family proteinF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
19.799.630.3At1g70170843353MMP (MATRIX METALLOPROTEINASE)mutant has Late flowering; Early senescence; Matrix MetalloproteinaseO.I.C.G.H.G.
19.599.652.0At3g11840820357PUB24 (PLANT U-BOX 24)Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
19.099.545.7At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
19.099.538.0At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
18.899.5434.9At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
18.399.571.3At3g16800820933protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFVO.I.C.G.H.G.
18.299.5161.5At4g26080828714ABI1 (ABA INSENSITIVE 1)Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.O.I.C.G.H.G.
18.299.5135.5At5g22630832326ADT5 (arogenate dehydratase 5)Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].O.I.C.G.H.G.
18.299.527.7At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
18.099.577.4At2g18210816336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.099.526.7At2g28780817427unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;BPOO.I.C.G.H.G.
18.099.513.0At1g74080843748MYB122 (MYB DOMAIN PROTEIN 122)Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).O.I.C.G.H.G.
17.799.536.0At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
17.599.518.7At2g22850816816AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFO.I.C.G.H.G.
17.499.523.1At2g45050819112zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOVO.I.C.G.H.G.
17.399.519.9At1g686903767664ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplastO.I.C.G.H.G.
17.199.554.8At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.O.I.C.G.H.G.
17.199.519.2At1g01010839580ANAC001 (Arabidopsis NAC domain containing protein 1)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
17.099.545.5At2g15480816040UGT73B5 (UDP-glucosyl transferase 73B5)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFO.I.C.G.H.G.
17.099.528.0At3g28580822488AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAVO.I.C.G.H.G.
16.799.521.0At3g25790822170myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
16.599.520.9At5g06740830563lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.499.518.0At5g10720830938AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)member of Histidine KinaseO.I.C.G.H.G.
16.199.589.3At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
16.199.528.9At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
15.999.525.1At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
15.899.534.2At3g49810824143U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBVO.I.C.G.H.G.
15.899.522.5At5g07680830661ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.529.7At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
15.599.519.2At4g01910827105DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
15.499.512.5At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
15.299.461.3At5g62630836384HIPL2 (HIPL2 PROTEIN PRECURSOR)F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAFO.I.C.G.H.G.
15.299.419.0At1g17750838353leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
15.199.430.8At2g41880818788GK-1 (GUANYLATE KINASE 1)Guanylate kinase. Involved in nucleotide metabolism.O.I.C.G.H.G.
15.099.418.6At4g37730829929AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBO.I.C.G.H.G.
14.899.415.7At5g10100830874trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
14.799.4131.1At2g26530817194AR781unknown functionO.I.C.G.H.G.
14.799.49.4At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.O.I.C.G.H.G.
14.599.438.3At1g64060842710ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.O.I.C.G.H.G.
14.599.416.9At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
14.399.473.9At1g60190842314armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVAO.I.C.G.H.G.
14.399.429.2At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
14.299.4216.8At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
14.299.487.6At1g11670837711MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
14.299.442.8At5g17850831653cation exchanger, putative (CAX8)F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPAO.I.C.G.H.G.
14.199.479.8At1g08920837413sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
14.199.424.9At3g10960820267xanthine/uracil permease family proteinF:transmembrane transporter activity, transporter activity;P:transport;C:membrane;BOFAPMO.I.C.G.H.G.
13.999.440.9At3g63010825476GID1B (GA INSENSITIVE DWARF1B)Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.O.I.C.G.H.G.
13.899.4166.7At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.O.I.C.G.H.G.
13.899.443.1At3g24520822047AT-HSFC1member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
13.899.418.6At2g31990817758exostosin family proteinF:catalytic activity;P:biological_process unknown;C:membrane;POMFVO.I.C.G.H.G.
13.699.446.2At4g28085828924unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
13.699.428.4At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
13.599.441.2At3g11420820315fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
13.599.431.1At1g02220839476ANAC003 (Arabidopsis NAC domain containing protein 3)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.C.G.H.G.
13.499.441.8At3g44540823579FAR4 (FATTY ACID REDUCTASE 4)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOFO.I.C.G.H.G.
13.499.440.4At5g58700835984phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MFOPO.I.C.G.H.G.
13.499.416.0At5g42630834270ATS (ABERRANT TESTA SHAPE)Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.O.I.C.G.H.G.
13.299.450.3At5g56980835800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
13.099.481.5At4g22610828357protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
13.099.419.2At1g24150839028FH4 (FORMIN HOMOLOGUE 4)Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.O.I.C.G.H.G.
12.999.367.8At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.



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