CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131294

Assay name AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2

GSE experiment GSE5622: AtGenExpress: Stress Treatments (Osmotic stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
272.6 100.0 135.7 At3g48510 824010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
98.8 99.9 29.0 At4g36740 829827 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
72.3 99.9 36.5 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
70.9 99.9 250.9 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
69.1 99.9 33.9 At5g10100 830874 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA O.I. C.G. H.G.
62.7 99.8 381.4 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
62.4 99.8 74.1 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. C.G. H.G.
55.6 99.8 244.9 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
51.2 99.8 33.0 At3g24310 822019 MYB305 (myb domain protein 305) snapdragon myb protein 305 homolog (myb) O.I. C.G. H.G.
47.3 99.8 71.2 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
47.1 99.8 83.7 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
45.9 99.8 369.7 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). O.I. C.G. H.G.
45.4 99.8 138.2 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. O.I. C.G. H.G.
39.2 99.8 71.9 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
39.1 99.8 52.8 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
38.0 99.8 25.9 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
37.7 99.7 111.3 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.
37.7 99.7 24.2 At3g55090 824675 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV O.I. C.G. H.G.
37.3 99.7 101.1 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
36.9 99.7 82.2 At5g44730 834502 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP O.I. C.G. H.G.
35.2 99.7 39.2 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
29.9 99.7 87.5 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
29.3 99.7 59.0 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
29.2 99.7 110.8 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
28.5 99.7 76.6 At4g34000 829547 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. O.I. C.G. H.G.
28.4 99.7 74.4 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
27.8 99.7 529.3 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. C.G. H.G.
27.1 99.7 45.8 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA O.I. C.G. H.G.
26.4 99.7 55.7 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
26.1 99.7 113.8 At1g30720 839952 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
24.4 99.6 31.4 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
23.9 99.6 130.2 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
23.7 99.6 629.7 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
23.4 99.6 319.6 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
23.4 99.6 14.5 At4g35690 829721 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFB O.I. C.G. H.G.
23.3 99.6 302.6 At2g26400 817180 ATARD3 (ACIREDUCTONE DIOXYGENASE 3) Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family. O.I. C.G. H.G.
23.3 99.6 121.8 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
23.3 99.6 55.2 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
23.0 99.6 92.1 At5g65640 836690 bHLH093 (beta HLH protein 93) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
22.2 99.6 279.3 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
22.1 99.6 37.6 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
22.0 99.6 37.0 At5g66700 836803 HB53 Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. O.I. C.G. H.G.
21.6 99.6 56.7 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
21.4 99.6 172.3 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.4 99.6 108.4 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
21.1 99.6 12.9 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
21.0 99.6 65.1 At3g21520 821706 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 29.4 At5g23190 832383 CYP86B1 cytochrome P450 CYP86B1, nuclear gene for chloroplast product O.I. C.G. H.G.
20.8 99.6 229.5 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
20.7 99.6 117.7 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.0 99.6 88.2 At2g30500 817600 kinase interacting family protein F:unknown;P:unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
20.0 99.6 82.7 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO O.I. C.G. H.G.
19.7 99.6 212.7 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 106.4 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
19.5 99.6 141.1 At1g62570 842554 FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
19.4 99.6 59.3 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV O.I. C.G. H.G.
19.4 99.6 31.5 At3g03170 821064 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.3 99.6 207.4 At3g22620 821833 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV O.I. C.G. H.G.
19.3 99.6 92.1 At1g26270 839168 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
19.0 99.5 27.8 At3g57540 824921 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
19.0 99.5 23.1 At2g32510 817812 MAPKKK17 member of MEKK subfamily O.I. C.G. H.G.
18.8 99.5 60.9 At4g33950 829541 OST1 (OPEN STOMATA 1) Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. O.I. C.G. H.G.
18.4 99.5 42.3 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) O.I. C.G. H.G.
18.4 99.5 29.2 At1g70170 843353 MMP (MATRIX METALLOPROTEINASE) mutant has Late flowering; Early senescence; Matrix Metalloproteinase O.I. C.G. H.G.
18.3 99.5 61.6 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
17.9 99.5 70.5 At3g16800 820933 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFV O.I. C.G. H.G.
17.9 99.5 50.2 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
17.8 99.5 18.4 At4g31020 829229 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVA O.I. C.G. H.G.
17.7 99.5 48.7 At1g49720 841395 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1) Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. O.I. C.G. H.G.
17.7 99.5 43.7 At4g01120 826505 GBF2 (G-BOX BINDING FACTOR 2) bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light O.I. C.G. H.G.
17.5 99.5 18.2 At1g55740 842023 AtSIP1 (Arabidopsis thaliana seed imbibition 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
17.3 99.5 84.6 At2g46680 819280 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. O.I. C.G. H.G.
17.3 99.5 49.7 At2g19580 816477 TET2 (TETRASPANIN2) Member of TETRASPANIN family O.I. C.G. H.G.
17.3 99.5 17.9 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
17.1 99.5 177.1 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.7 99.5 88.9 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
16.6 99.5 77.7 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. C.G. H.G.
16.5 99.5 82.6 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
16.1 99.5 284.6 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
15.8 99.5 35.0 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
15.8 99.5 15.8 At4g40070 830170 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
15.7 99.5 72.7 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase O.I. C.G. H.G.
15.7 99.5 62.3 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs O.I. C.G. H.G.
15.7 99.5 19.7 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. O.I. C.G. H.G.
15.6 99.5 323.2 At4g27450 828854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF O.I. C.G. H.G.
15.5 99.5 22.0 At3g44550 823580 FAR5 (FATTY ACID REDUCTASE 5) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPA O.I. C.G. H.G.
15.3 99.4 315.1 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
15.2 99.4 104.4 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
15.2 99.4 59.7 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. O.I. C.G. H.G.
15.2 99.4 19.2 At4g15120 827178 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA O.I. C.G. H.G.
15.1 99.4 385.3 At1g03220 838517 extracellular dermal glycoprotein, putative / EDGP, putative F:aspartic-type endopeptidase activity;P:response to salt stress;C:cell wall, plasma membrane, membrane, plant-type cell wall;P O.I. C.G. H.G.
15.1 99.4 146.8 At5g37740 833752 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
15.1 99.4 28.6 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
15.1 99.4 14.0 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.8 99.4 143.5 At5g64250 836546 2-nitropropane dioxygenase family / NPD family F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
14.8 99.4 73.3 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF O.I. C.G. H.G.
14.8 99.4 29.8 At3g23150 821891 ETR2 (ethylene response 2) Involved in ethylene perception in Arabidopsis O.I. C.G. H.G.
14.4 99.4 97.3 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP O.I. C.G. H.G.
14.4 99.4 52.8 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P O.I. C.G. H.G.
14.1 99.4 80.8 At3g57010 824868 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
272.6	100.0	135.7	At3g48510	824010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
98.8	99.9	29.0	At4g36740	829827	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
72.3	99.9	36.5	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
70.9	99.9	250.9	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
69.1	99.9	33.9	At5g10100	830874	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA	O.I.	C.G.	H.G.
62.7	99.8	381.4	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
62.4	99.8	74.1	At3g10040	820165	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	C.G.	H.G.
55.6	99.8	244.9	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
51.2	99.8	33.0	At3g24310	822019	MYB305 (myb domain protein 305)	snapdragon myb protein 305 homolog (myb)	O.I.	C.G.	H.G.
47.3	99.8	71.2	At4g24110	828511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
47.1	99.8	83.7	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.9	99.8	369.7	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	O.I.	C.G.	H.G.
45.4	99.8	138.2	At5g11110	830979	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.	O.I.	C.G.	H.G.
39.2	99.8	71.9	At4g36610	829813	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
39.1	99.8	52.8	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
38.0	99.8	25.9	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
37.7	99.7	111.3	At1g59500	842240	GH3.4	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.
37.7	99.7	24.2	At3g55090	824675	ATPase, coupled to transmembrane movement of substances	F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
37.3	99.7	101.1	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
36.9	99.7	82.2	At5g44730	834502	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP	O.I.	C.G.	H.G.
35.2	99.7	39.2	At1g49450	841369	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
29.9	99.7	87.5	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
29.3	99.7	59.0	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
29.2	99.7	110.8	At5g39890	833986	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
28.5	99.7	76.6	At4g34000	829547	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid.	O.I.	C.G.	H.G.
28.4	99.7	74.4	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
27.8	99.7	529.3	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	H.G.
27.1	99.7	45.8	At3g27220	822341	kelch repeat-containing protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA	O.I.	C.G.	H.G.
26.4	99.7	55.7	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
26.1	99.7	113.8	At1g30720	839952	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
24.4	99.6	31.4	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
23.9	99.6	130.2	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
23.7	99.6	629.7	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
23.4	99.6	319.6	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
23.4	99.6	14.5	At4g35690	829721	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFB	O.I.	C.G.	H.G.
23.3	99.6	302.6	At2g26400	817180	ATARD3 (ACIREDUCTONE DIOXYGENASE 3)	Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family.	O.I.	C.G.	H.G.
23.3	99.6	121.8	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
23.3	99.6	55.2	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
23.0	99.6	92.1	At5g65640	836690	bHLH093 (beta HLH protein 93)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
22.2	99.6	279.3	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
22.1	99.6	37.6	At1g60470	842342	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
22.0	99.6	37.0	At5g66700	836803	HB53	Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.	O.I.	C.G.	H.G.
21.6	99.6	56.7	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
21.4	99.6	172.3	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.4	99.6	108.4	At3g04070	819562	anac047 (Arabidopsis NAC domain containing protein 47)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.1	99.6	12.9	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
21.0	99.6	65.1	At3g21520	821706	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	29.4	At5g23190	832383	CYP86B1	cytochrome P450 CYP86B1, nuclear gene for chloroplast product	O.I.	C.G.	H.G.
20.8	99.6	229.5	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
20.7	99.6	117.7	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.0	99.6	88.2	At2g30500	817600	kinase interacting family protein	F:unknown;P:unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
20.0	99.6	82.7	At3g12700	820452	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
19.7	99.6	212.7	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	106.4	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
19.5	99.6	141.1	At1g62570	842554	FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
19.4	99.6	59.3	At5g13580	831202	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
19.4	99.6	31.5	At3g03170	821064	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.3	99.6	207.4	At3g22620	821833	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV	O.I.	C.G.	H.G.
19.3	99.6	92.1	At1g26270	839168	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
19.0	99.5	27.8	At3g57540	824921	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
19.0	99.5	23.1	At2g32510	817812	MAPKKK17	member of MEKK subfamily	O.I.	C.G.	H.G.
18.8	99.5	60.9	At4g33950	829541	OST1 (OPEN STOMATA 1)	Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.	O.I.	C.G.	H.G.
18.4	99.5	42.3	At2g23030	816833	SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)	encodes a member of SNF1-related protein kinases (SnRK2)	O.I.	C.G.	H.G.
18.4	99.5	29.2	At1g70170	843353	MMP (MATRIX METALLOPROTEINASE)	mutant has Late flowering; Early senescence; Matrix Metalloproteinase	O.I.	C.G.	H.G.
18.3	99.5	61.6	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
17.9	99.5	70.5	At3g16800	820933	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFV	O.I.	C.G.	H.G.
17.9	99.5	50.2	At3g22830	821854	AT-HSFA6B	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
17.8	99.5	18.4	At4g31020	829229	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVA	O.I.	C.G.	H.G.
17.7	99.5	48.7	At1g49720	841395	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)	Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	O.I.	C.G.	H.G.
17.7	99.5	43.7	At4g01120	826505	GBF2 (G-BOX BINDING FACTOR 2)	bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light	O.I.	C.G.	H.G.
17.5	99.5	18.2	At1g55740	842023	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
17.3	99.5	84.6	At2g46680	819280	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.	O.I.	C.G.	H.G.
17.3	99.5	49.7	At2g19580	816477	TET2 (TETRASPANIN2)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
17.3	99.5	17.9	At2g29380	817487	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
17.1	99.5	177.1	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.7	99.5	88.9	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
16.6	99.5	77.7	At5g41040	834106	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
16.5	99.5	82.6	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
16.1	99.5	284.6	At5g09530	830812	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
15.8	99.5	35.0	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
15.8	99.5	15.8	At4g40070	830170	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
15.7	99.5	72.7	At2g19590	816478	ACO1 (ACC OXIDASE 1)	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	O.I.	C.G.	H.G.
15.7	99.5	62.3	At5g25110	832582	CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)	member of AtCIPKs	O.I.	C.G.	H.G.
15.7	99.5	19.7	At3g15990	820844	SULTR3	Encodes sulfate transporter Sultr3;4.	O.I.	C.G.	H.G.
15.6	99.5	323.2	At4g27450	828854	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF	O.I.	C.G.	H.G.
15.5	99.5	22.0	At3g44550	823580	FAR5 (FATTY ACID REDUCTASE 5)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPA	O.I.	C.G.	H.G.
15.3	99.4	315.1	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
15.2	99.4	104.4	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
15.2	99.4	59.7	At3g29035	822547	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.	O.I.	C.G.	H.G.
15.2	99.4	19.2	At4g15120	827178	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA	O.I.	C.G.	H.G.
15.1	99.4	385.3	At1g03220	838517	extracellular dermal glycoprotein, putative / EDGP, putative	F:aspartic-type endopeptidase activity;P:response to salt stress;C:cell wall, plasma membrane, membrane, plant-type cell wall;P	O.I.	C.G.	H.G.
15.1	99.4	146.8	At5g37740	833752	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
15.1	99.4	28.6	At3g50400	824204	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
15.1	99.4	14.0	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.8	99.4	143.5	At5g64250	836546	2-nitropropane dioxygenase family / NPD family	F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
14.8	99.4	73.3	At1g13300	837890	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF	O.I.	C.G.	H.G.
14.8	99.4	29.8	At3g23150	821891	ETR2 (ethylene response 2)	Involved in ethylene perception in Arabidopsis	O.I.	C.G.	H.G.
14.4	99.4	97.3	At5g13750	831220	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP	O.I.	C.G.	H.G.
14.4	99.4	52.8	At4g17280	827442	-	F:unknown;P:multicellular organismal development;C:membrane;P	O.I.	C.G.	H.G.
14.1	99.4	80.8	At3g57010	824868	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA	O.I.	C.G.	H.G.

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GSM ID	GSM131294
Assay name	AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2
GSE experiment	GSE5622: AtGenExpress: Stress Treatments (Osmotic stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131294 Assay name AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2 GSE experiment GSE5622: AtGenExpress: Stress Treatments (Osmotic stress)

GSM ID GSM131294

Assay name AtGen_6-2322_Osmoticstress-Roots-3.0h_Rep2

GSE experiment GSE5622: AtGenExpress: Stress Treatments (Osmotic stress)