Microarray experiments to specifically-expressed genes

GSM ID GSM131278
Assay name AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2
GSE experiment GSE5621: AtGenExpress: Stress Treatments (Cold stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
348.0100.076.0At5g10100830874trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
319.8100.0207.1At1g49720841395ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.O.I.C.G.H.G.
263.7100.0116.5At4g22270828322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
208.6100.0229.4At1g68500843179unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
204.3100.072.4At2g22590816790transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
153.099.953.3At2g26820817223ATPP2-A3 (Phloem protein 2-A3)F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVAO.I.C.G.H.G.
119.399.9124.1At5g17850831653cation exchanger, putative (CAX8)F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPAO.I.C.G.H.G.
110.599.9306.8At5g40390834037SIP1 (seed imbibition 1-like)Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.O.I.C.G.H.G.
102.699.945.8At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
92.699.962.9At3g22930821865calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBVO.I.C.G.H.G.
92.599.9307.3At1g62570842554FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
82.599.993.4At4g33980829544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
81.199.9150.3At3g16800820933protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFVO.I.C.G.H.G.
76.999.984.6At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAO.I.C.G.H.G.
70.999.959.3At5g48070834859XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.O.I.C.G.H.G.
70.099.963.2At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
68.099.9118.9At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
67.399.865.6At1g60470842342AtGolS4 (Arabidopsis thaliana galactinol synthase 4)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
66.599.894.8At3g24520822047AT-HSFC1member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
65.199.8124.1At1g64890842797integral membrane transporter family proteinF:transporter activity;P:transport;C:membrane;BOPMAFO.I.C.G.H.G.
65.199.8112.8At3g50260824188CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
63.199.871.5At2g46670819279pseudo-response regulator, putative / timing of CAB expression 1-like protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
57.199.840.8At5g54470835535zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFMO.I.C.G.H.G.
53.599.853.3At3g25730822164AP2 domain-containing transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;POO.I.C.G.H.G.
50.899.870.9At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
48.999.863.6At5g05790830464myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOO.I.C.G.H.G.
48.599.8172.3At4g36010829757pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
47.599.853.7At5g48250834878zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POMO.I.C.G.H.G.
43.099.8216.7At4g31800829308WRKY18Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.C.G.H.G.
42.799.8100.2At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
41.599.8183.6At1g79660844305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
40.999.8641.8At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
39.299.862.1At5g41280834129-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
37.499.7125.6At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
37.499.713.9At5g46520834695ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptorF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAO.I.C.G.H.G.
36.799.7232.3At4g24960828598ATHVA22DHomologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.O.I.C.G.H.G.
36.199.726.6At2g21900816726WRKY59member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
36.199.720.8At3g60930825264transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
35.099.7105.2At4g25480828652DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
34.299.7105.4At1g75860843919unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
33.499.715.4At1g49220841345zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
33.399.7278.2At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
33.399.745.0At1g14780838043-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
32.899.751.2At3g05580819724serine/threonine protein phosphatase, putativeF:protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.C.G.H.G.
32.699.731.2At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
32.399.768.3At4g33920829536protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBVO.I.C.G.H.G.
31.999.737.2At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
30.499.7110.3At5g47060834752senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
30.099.7228.8At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
29.899.7104.4At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
29.299.7153.5At5g04340830313ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)putative c2h2 zinc finger transcription factor mRNA,O.I.C.G.H.G.
29.299.721.4At2g26290817169ARSK1 (root-specific kinase 1)F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVAO.I.C.G.H.G.
28.999.797.5At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
28.199.750.6At5g55970835695zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFVO.I.C.G.H.G.
27.599.721.6At1g76270843960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PFO.I.C.G.H.G.
26.799.7166.9At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeO.I.C.G.H.G.
26.599.7110.0At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
26.299.731.6At2g35710818140glycogenin glucosyltransferase (glycogenin)-relatedF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBVO.I.C.G.H.G.
25.999.785.0At1g10410837581-F:unknown;P:N-terminal protein myristoylation;C:chloroplast;POMFO.I.C.G.H.G.
25.999.774.1At2g21180816653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.699.7121.0At2g16700816171ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)Encodes actin depolymerizing factor 5 (ADF5).O.I.C.G.H.G.
25.399.648.1At5g24270832494SOS3 (SALT OVERLY SENSITIVE 3)encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.O.I.C.G.H.G.
25.399.624.5At5g28080832881WNK9Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.O.I.C.G.H.G.
25.199.659.4At3g22830821854AT-HSFA6Bmember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
25.099.624.8At1g36640840572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.999.6272.5At5g20830832206SUS1 (SUCROSE SYNTHASE 1)Encodes a protein with sucrose synthase activity (SUS1).O.I.C.G.H.G.
24.899.643.9At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
24.799.6111.1At3g04010819556glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
24.599.6183.4At3g60450825216-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMO.I.C.G.H.G.
24.399.6423.6At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
24.399.6109.7At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
24.399.651.0At4g12000826807-F:unknown;P:response to oxidative stress;C:unknown;BOPMFAO.I.C.G.H.G.
23.899.634.3At3g04060819561anac046 (Arabidopsis NAC domain containing protein 46)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
23.799.6135.1At1g75390843875AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOMO.I.C.G.H.G.
23.799.699.9At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
23.699.631.7At4g332408294601-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion bindingF:1-phosphatidylinositol-4-phosphate 5-kinase activity, protein binding, phosphatidylinositol phosphate kinase activity, zinc ion binding, ATP binding;P:phosphatidylinositol metabolic process, cellular protein metabolic process;C:unknown;MOFPABVO.I.C.G.H.G.
23.099.664.6At1g65690842880harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.899.6132.1At1g73480843683hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
22.799.6106.2At4g27560828865glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
22.799.615.7At5g38350833817disease resistance protein (NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFAO.I.C.G.H.G.
22.499.6311.0At4g32020829333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFMO.I.C.G.H.G.
22.199.6101.1At5g16910831554CSLD2 (CELLULOSE-SYNTHASE LIKE D2)encodes a gene similar to cellulose synthase. Located in golgi membranes.O.I.C.G.H.G.
21.299.647.2At3g27880822408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
21.199.670.9At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
21.099.617.6At3g62690825443ATL5 (ATL5)Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.O.I.C.G.H.G.
20.999.675.0At5g24470832518APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.O.I.C.G.H.G.
20.699.662.8At1g08430837363ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1)Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).O.I.C.G.H.G.
20.599.6102.2At5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.O.I.C.G.H.G.
20.399.631.3At4g37400829894CYP81F3member of CYP81FO.I.C.G.H.G.
19.899.699.6At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
19.699.669.6At5g25110832582CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)member of AtCIPKsO.I.C.G.H.G.
19.599.661.0At2g23340816866AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
19.099.5195.4At1g74840843823myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;POMO.I.C.G.H.G.
18.899.5120.4At4g14630827113GLP9 (GERMIN-LIKE PROTEIN 9)germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.O.I.C.G.H.G.
18.899.575.8At1g68050843133FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1)Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.O.I.C.G.H.G.
18.799.551.0At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
18.699.528.2At5g52710835348heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
18.499.5140.8At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
18.099.5104.9At5g57110835815ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.O.I.C.G.H.G.
17.699.5241.6At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.



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