Microarray experiments to specifically-expressed genes

GSM ID GSM131276
Assay name AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2
GSE experiment GSE5621: AtGenExpress: Stress Treatments (Cold stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
186.9100.035.6At4g28320828947glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBFOAO.I.C.G.H.G.
154.099.9125.3At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
146.399.9124.3At4g27820828895BGLU9 (BETA GLUCOSIDASE 9)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFAO.I.C.G.H.G.
140.699.951.9At3g55580824723regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
136.699.998.0At1g32860840180glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POFO.I.C.G.H.G.
126.099.9173.4At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
116.999.9182.4At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
115.199.983.5At5g48250834878zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POMO.I.C.G.H.G.
99.099.9115.3At1g49720841395ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.O.I.C.G.H.G.
98.499.9102.0At4g33980829544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
93.899.9139.7At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
93.399.9153.4At1g68500843179unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
83.199.926.2At1g09950837529transcription factor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
81.899.9202.2At3g04010819556glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
77.499.9121.6At2g23340816866AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
76.499.969.6At2g22190816753catalytic/ trehalose-phosphataseF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFAO.I.C.G.H.G.
73.599.9192.0At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
70.899.9351.4At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
70.399.945.3At5g54470835535zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFMO.I.C.G.H.G.
69.899.9128.5At1g64890842797integral membrane transporter family proteinF:transporter activity;P:transport;C:membrane;BOPMAFO.I.C.G.H.G.
66.899.8147.2At1g75860843919unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
66.199.8162.7At5g47060834752senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
64.599.8131.7At5g24470832518APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.O.I.C.G.H.G.
60.899.8160.3At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
59.799.873.9At3g05800819749transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PO.I.C.G.H.G.
59.299.8171.4At4g27560828865glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
58.799.849.0At1g19370838520unknown proteinF:unknown;P:unknown;C:endoplasmic reticulum;POO.I.C.G.H.G.
54.899.8183.1At4g36010829757pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
54.299.859.2At1g76580843991transcription factorF:transcription factor activity;P:regulation of transcription;C:plasma membrane;OMFPBO.I.C.G.H.G.
53.799.890.7At1g53035841737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
53.299.8129.8At4g25480828652DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
53.199.885.9At1g70420843378unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
49.499.8206.1At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
43.999.892.7At3g50260824188CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
43.599.8494.6At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
42.099.8119.8At3g51895824353SULTR3Encodes a sulfate transporter.O.I.C.G.H.G.
40.799.846.6At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
40.099.872.7At1g10090837544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
39.999.8242.0At4g24960828598ATHVA22DHomologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.O.I.C.G.H.G.
39.299.820.1At2g42150818815DNA-binding bromodomain-containing proteinF:DNA binding;P:unknown;C:nucleus;MOFPBVO.I.C.G.H.G.
38.899.838.2At5g63320836452-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
38.699.872.0At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
38.499.8153.2At5g57110835815ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.O.I.C.G.H.G.
38.499.826.6At5g61370836258pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMAO.I.C.G.H.G.
37.799.7132.4At2g36220818194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.499.765.3At3g02250821223unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.299.7111.4At2g19450816464TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development.O.I.C.G.H.G.
35.799.769.1At1g51610841586cation efflux family protein / metal tolerance protein, putative (MTPc4)F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAPO.I.C.G.H.G.
34.899.798.5At1g10410837581-F:unknown;P:N-terminal protein myristoylation;C:chloroplast;POMFO.I.C.G.H.G.
33.799.7109.1At5g42900834301unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.699.739.6At3g01210821275nucleic acid binding / oxidoreductaseF:oxidoreductase activity, nucleic acid binding;P:oxidation reduction;C:cellular_component unknown;PFOMO.I.C.G.H.G.
32.399.7121.3At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
32.399.754.8At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAO.I.C.G.H.G.
32.399.721.2At1g78440844180ATGA2OX1 (gibberellin 2-oxidase 1)Encodes a gibberellin 2-oxidase.O.I.C.G.H.G.
32.099.720.2At5g06710830560HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)Homeobox-leucine zipper protein.O.I.C.G.H.G.
30.399.765.0At5g04250830304OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
30.199.716.0At4g23000828399hydrolase/ protein serine/threonine phosphataseF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
28.399.7206.5At1g69870843323proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFOO.I.C.G.H.G.
28.199.7291.2At2g17840816293ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.O.I.C.G.H.G.
27.399.715.5At3g01960821109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.199.768.8At5g46710834714zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
26.999.799.1At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
26.799.771.8At4g18390827568TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
26.399.750.8At5g61810836303mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBVO.I.C.G.H.G.
26.399.745.5At1g08890837410sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOAO.I.C.G.H.G.
25.399.68.6At1g62320842530early-responsive to dehydration protein-related / ERD protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
25.199.6138.7At1g73480843683hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
24.499.6156.3At1g47710841182serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAFO.I.C.G.H.G.
24.299.6159.0At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeO.I.C.G.H.G.
24.299.6151.3At5g24570832528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.899.616.8At5g37440833720DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
23.299.656.1At4g19960827740potassium ion transmembrane transporterF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAVO.I.C.G.H.G.
22.799.6286.9At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemO.I.C.G.H.G.
22.799.621.1At5g45610834601unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.6472.5At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
21.999.643.8At3g55760824742unknown proteinF:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFBO.I.C.G.H.G.
21.899.6136.4At5g40390834037SIP1 (seed imbibition 1-like)Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.O.I.C.G.H.G.
21.699.6399.5At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
21.699.643.4At3g17130820970invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
21.499.619.0At1g76270843960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PFO.I.C.G.H.G.
21.399.645.9At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
21.299.613.6At1g17665838343unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMFO.I.C.G.H.G.
20.999.641.1At2g46670819279pseudo-response regulator, putative / timing of CAB expression 1-like protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
20.799.678.8At1g22570838863proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
20.599.6336.3At2g31360817694ADS2 (16:0Delta9 Arabidopsis desaturase 2)homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.O.I.C.G.H.G.
19.799.623.3At1g34570840360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
19.699.6105.1At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
19.199.6107.4At3g12320820411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
19.199.646.2At1g71710843501inositol polyphosphate 5-phosphatase, putativeF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOVO.I.C.G.H.G.
18.999.549.5At5g17850831653cation exchanger, putative (CAX8)F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPAO.I.C.G.H.G.
18.699.555.8At2g28720817421histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFBO.I.C.G.H.G.
18.699.536.3At5g55400835633fimbrin-like protein, putativeF:actin binding;P:unknown;C:vacuole;MOFPBAO.I.C.G.H.G.
17.799.5161.1At3g56090824775ATFER3 (ferritin 3)Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.O.I.C.G.H.G.
17.799.5129.4At1g56300842083DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
17.699.5100.3At2g16700816171ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)Encodes actin depolymerizing factor 5 (ADF5).O.I.C.G.H.G.
17.599.5126.3At3g59350825104serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
17.499.562.4At1g02270839381endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family proteinF:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOFO.I.C.G.H.G.
17.399.5184.0At3g23000821874CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.O.I.C.G.H.G.
17.099.550.8At1g78070844142-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFOO.I.C.G.H.G.
16.999.552.3At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAO.I.C.G.H.G.



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