CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131268

Assay name AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2

GSE experiment GSE5621: AtGenExpress: Stress Treatments (Cold stress)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
324.3 100.0 158.6 At4g25490 828653 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. O.I. C.G. H.G.
232.6 100.0 325.7 At4g25470 828651 CBF2 (C-REPEAT/DRE BINDING FACTOR 2) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. O.I. C.G. H.G.
161.0 99.9 225.8 At4g25480 828652 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. O.I. C.G. H.G.
118.7 99.9 25.5 At5g51990 835274 CBF4 (C- REPEAT-BINDING FACTOR 4) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature. O.I. C.G. H.G.
44.6 99.8 36.1 At5g54470 835535 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM O.I. C.G. H.G.
24.3 99.6 131.9 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
23.9 99.6 57.6 At1g70420 843378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
22.7 99.6 92.9 At1g73540 843688 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA O.I. C.G. H.G.
22.7 99.6 65.8 At3g48100 823965 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay. O.I. C.G. H.G.
22.2 99.6 145.7 At3g04640 819622 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA O.I. C.G. H.G.
20.7 99.6 91.0 At1g61340 842428 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.6 99.6 122.0 At1g13260 837886 RAV1 Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. O.I. C.G. H.G.
19.7 99.6 111.7 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.1 99.5 104.5 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
18.0 99.5 20.3 At5g51390 835213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.0 99.5 14.7 At3g60930 825264 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.3 99.5 38.1 At3g20590 821606 non-race specific disease resistance protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.2 99.5 140.4 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.1 99.5 34.9 At1g69570 843293 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
16.3 99.5 243.1 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem O.I. C.G. H.G.
16.1 99.5 29.9 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
15.5 99.5 98.9 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
15.2 99.4 46.2 At5g10750 830942 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
15.2 99.4 42.8 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
14.9 99.4 84.1 At5g45340 834570 CYP707A3 Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor). O.I. C.G. H.G.
14.8 99.4 11.7 At5g15240 831376 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:response to salt stress, amino acid transport;C:membrane;MFPOBVA O.I. C.G. H.G.
14.3 99.4 24.6 At2g17660 816273 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO O.I. C.G. H.G.
14.2 99.4 121.2 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
14.0 99.4 94.1 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.8 99.4 50.7 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
13.5 99.4 112.2 At1g18740 838456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PA O.I. C.G. H.G.
12.8 99.3 75.5 At1g25400 839126 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.3 99.3 60.8 At1g22570 838863 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
12.2 99.3 74.9 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
11.9 99.3 79.5 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
11.8 99.3 31.1 At3g27540 822376 glycosyl transferase family 17 protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFV O.I. C.G. H.G.
11.5 99.3 40.8 At4g33920 829536 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV O.I. C.G. H.G.
11.1 99.2 61.9 At1g21050 838699 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.9 99.2 67.8 At2g27260 817268 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PAMO O.I. C.G. H.G.
10.7 99.2 214.8 At4g32020 829333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFM O.I. C.G. H.G.
10.3 99.2 47.2 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
10.3 99.2 38.0 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
10.2 99.2 53.5 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
10.1 99.2 55.4 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. C.G. H.G.
9.4 99.1 229.6 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
9.3 99.1 125.8 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
9.3 99.1 62.6 At4g18280 827554 glycine-rich cell wall protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
9.3 99.1 32.7 At5g62430 836364 CDF1 (CYCLING DOF FACTOR 1) Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon. O.I. C.G. H.G.
9.2 99.1 59.4 At3g23170 821893 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.1 99.1 128.7 At3g46620 823815 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. C.G. H.G.
8.8 99.0 81.0 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
8.7 99.0 145.7 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.7 99.0 56.9 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
324.3	100.0	158.6	At4g25490	828653	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	O.I.	C.G.	H.G.
232.6	100.0	325.7	At4g25470	828651	CBF2 (C-REPEAT/DRE BINDING FACTOR 2)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.	O.I.	C.G.	H.G.
161.0	99.9	225.8	At4g25480	828652	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	O.I.	C.G.	H.G.
118.7	99.9	25.5	At5g51990	835274	CBF4 (C- REPEAT-BINDING FACTOR 4)	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.	O.I.	C.G.	H.G.
44.6	99.8	36.1	At5g54470	835535	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM	O.I.	C.G.	H.G.
24.3	99.6	131.9	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
23.9	99.6	57.6	At1g70420	843378	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
22.7	99.6	92.9	At1g73540	843688	atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA	O.I.	C.G.	H.G.
22.7	99.6	65.8	At3g48100	823965	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.	O.I.	C.G.	H.G.
22.2	99.6	145.7	At3g04640	819622	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA	O.I.	C.G.	H.G.
20.7	99.6	91.0	At1g61340	842428	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.6	99.6	122.0	At1g13260	837886	RAV1	Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.	O.I.	C.G.	H.G.
19.7	99.6	111.7	At1g74450	843786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.1	99.5	104.5	At3g12320	820411	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
18.0	99.5	20.3	At5g51390	835213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.0	99.5	14.7	At3g60930	825264	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.3	99.5	38.1	At3g20590	821606	non-race specific disease resistance protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.2	99.5	140.4	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.1	99.5	34.9	At1g69570	843293	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
16.3	99.5	243.1	At3g17800	821048	-	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	O.I.	C.G.	H.G.
16.1	99.5	29.9	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
15.5	99.5	98.9	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
15.2	99.4	46.2	At5g10750	830942	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
15.2	99.4	42.8	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
14.9	99.4	84.1	At5g45340	834570	CYP707A3	Encodes a protein with ABA 8'-hydroxylase activity; involved in ABA catabolism. Mutant analyses show that disruption in the gene results in more drought tolerance whereas overexpression results in increased transpiration rate and reduced drought tolerance. Gene involved in postgermination growth. Plant P450 CYP707A3, ABA 8'-hydroxylase, binds enantioselectively (+)-ABA but not (-)-ABA, whereas the enzyme binds both enantiomers of AHI1 (a structural ABA analogue used as ABA 8'-hydroxylase competitive inhibitor).	O.I.	C.G.	H.G.
14.8	99.4	11.7	At5g15240	831376	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:response to salt stress, amino acid transport;C:membrane;MFPOBVA	O.I.	C.G.	H.G.
14.3	99.4	24.6	At2g17660	816273	nitrate-responsive NOI protein, putative	F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.2	99.4	121.2	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
14.0	99.4	94.1	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.8	99.4	50.7	At1g02660	839544	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
13.5	99.4	112.2	At1g18740	838456	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PA	O.I.	C.G.	H.G.
12.8	99.3	75.5	At1g25400	839126	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.3	99.3	60.8	At1g22570	838863	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
12.2	99.3	74.9	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
11.9	99.3	79.5	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
11.8	99.3	31.1	At3g27540	822376	glycosyl transferase family 17 protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFV	O.I.	C.G.	H.G.
11.5	99.3	40.8	At4g33920	829536	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV	O.I.	C.G.	H.G.
11.1	99.2	61.9	At1g21050	838699	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.9	99.2	67.8	At2g27260	817268	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PAMO	O.I.	C.G.	H.G.
10.7	99.2	214.8	At4g32020	829333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFM	O.I.	C.G.	H.G.
10.3	99.2	47.2	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
10.3	99.2	38.0	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
10.2	99.2	53.5	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
10.1	99.2	55.4	At5g12050	831078	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	C.G.	H.G.
9.4	99.1	229.6	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
9.3	99.1	125.8	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
9.3	99.1	62.6	At4g18280	827554	glycine-rich cell wall protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
9.3	99.1	32.7	At5g62430	836364	CDF1 (CYCLING DOF FACTOR 1)	Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.	O.I.	C.G.	H.G.
9.2	99.1	59.4	At3g23170	821893	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.1	99.1	128.7	At3g46620	823815	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	C.G.	H.G.
8.8	99.0	81.0	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
8.7	99.0	145.7	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.7	99.0	56.9	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.

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GSM ID	GSM131268
Assay name	AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2
GSE experiment	GSE5621: AtGenExpress: Stress Treatments (Cold stress)

Microarray experiments to specifically-expressed genes

GSM ID GSM131268 Assay name AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2 GSE experiment GSE5621: AtGenExpress: Stress Treatments (Cold stress)

GSM ID GSM131268

Assay name AtGen_6-1312_Cold(4°C)-Shoots-3.0h_Rep2

GSE experiment GSE5621: AtGenExpress: Stress Treatments (Cold stress)