Microarray experiments to specifically-expressed genes

GSM ID GSM131246
Assay name AtGen_6-0822_Control-Roots-4.0h_Rep2
GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
105.199.9115.9At5g38910833883germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
55.599.832.0At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
37.199.725.6At5g67430836879GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBAO.I.C.G.H.G.
29.799.742.2At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
26.299.716.3At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
25.899.721.9At2g26820817223ATPP2-A3 (Phloem protein 2-A3)F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVAO.I.C.G.H.G.
23.299.617.8At1g51840841611protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.299.646.5At2g23030816833SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)encodes a member of SNF1-related protein kinases (SnRK2)O.I.C.G.H.G.
22.099.627.0At3g13090820497ATMRP8member of MRP subfamilyO.I.C.G.H.G.
20.999.627.5At2g13810815864ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMFO.I.C.G.H.G.
20.599.663.7At5g11920831065AtcwINV6 (6-&1-fructan exohydrolase)Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.O.I.C.G.H.G.
20.199.628.5At5g22890832353zinc finger (C2H2 type) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
20.099.6280.4At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
19.499.699.7At2g07751815347NADH-ubiquinone oxidoreductase chain 3, putativeF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFAO.I.C.G.H.G.
18.599.536.3At1g02220839476ANAC003 (Arabidopsis NAC domain containing protein 3)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.C.G.H.G.
18.099.580.6At5g26270832696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
17.499.545.4At1g51830841610ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
17.499.59.3At1g48510841272cytochrome c oxidase assembly protein surfeit-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBO.I.C.G.H.G.
17.299.5102.2At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMO.I.C.G.H.G.
17.299.511.2At1g31060839992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
17.099.524.3At4g14390827084ankyrin repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
16.699.519.7At4g25090828612respiratory burst oxidase, putative / NADPH oxidase, putativeF:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOAO.I.C.G.H.G.
16.399.58.8At3g12220820402scpl16 (serine carboxypeptidase-like 16)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
16.299.543.1At4g08780826448peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFMO.I.C.G.H.G.
15.999.5131.1At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
15.799.526.2At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
15.499.518.8At4g37730829929AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBO.I.C.G.H.G.
15.299.420.0At5g06740830563lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
15.199.452.0At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
15.199.444.3At3g44540823579FAR4 (FATTY ACID REDUCTASE 4)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOFO.I.C.G.H.G.
15.099.495.8At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
14.699.411.6At4g19980827742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
14.499.437.6At5g41280834129-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
14.399.439.8At5g22555832318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.299.426.2At5g092908307883'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
14.199.467.7At4g23700828470ATCHX17 (CATION/H+ EXCHANGER 17)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
14.199.425.9At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
14.099.421.2At3g07600819951heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFVO.I.C.G.H.G.
13.999.4140.7At5g37740833752C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
13.999.421.5At5g48175834870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.899.432.7At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
13.799.414.5At3g60470825218unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.499.423.8At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
13.399.425.6At1g10990837642unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.416.3At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
12.899.376.9At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
12.799.3214.4At3g54040824571photoassimilate-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.799.392.0At4g08770826447peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFO.I.C.G.H.G.
12.799.361.2At5g37990833778S-adenosylmethionine-dependent methyltransferase/ methyltransferaseF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMFO.I.C.G.H.G.
12.799.359.8At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
12.699.325.0At3g53150824481UGT73D1 (UDP-glucosyl transferase 73D1)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
12.599.334.9At3g12230820403scpl14 (serine carboxypeptidase-like 14)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
12.499.3191.6At5g06860830577PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.O.I.C.G.H.G.
12.499.338.4At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
12.399.330.1At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
12.399.321.0At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
12.199.3101.7At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
12.199.3100.6At3g62040825377catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFAO.I.C.G.H.G.
12.099.322.1At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAO.I.C.G.H.G.
11.999.374.4At4g20110827757vacuolar sorting receptor, putativeF:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFAO.I.C.G.H.G.
11.899.312.1At3g47050823858glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAMO.I.C.G.H.G.
11.799.3186.3At5g20830832206SUS1 (SUCROSE SYNTHASE 1)Encodes a protein with sucrose synthase activity (SUS1).O.I.C.G.H.G.
11.799.332.3At3g14680820696CYP72A14putative cytochrome P450O.I.C.G.H.G.
11.699.3135.1At5g45510834587leucine-rich repeat family proteinF:protein binding;P:unknown;C:cytosol;MOPBFVAO.I.C.G.H.G.
11.699.353.5At4g34600829612unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
11.699.341.5At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.699.314.3At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
11.499.372.7At1g18970838478GLP4 (GERMIN-LIKE PROTEIN 4)Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).O.I.C.G.H.G.
11.399.380.8At1g22440838850alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
11.299.2269.2At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
11.299.226.3At5g66700836803HB53Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.O.I.C.G.H.G.
11.199.250.4At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.199.226.1At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
11.199.210.4At1g26970839588protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
11.199.29.3At2g48090819421unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
11.099.2103.1At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
10.999.2164.3At4g30140829137GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
10.899.2265.0At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinO.I.C.G.H.G.
10.899.219.3At5g45080834539AtPP2-A6 (Phloem protein 2-A6)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
10.799.2157.6At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
10.799.214.3At5g42630834270ATS (ABERRANT TESTA SHAPE)Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.O.I.C.G.H.G.
10.699.214.2At3g46270823772receptor protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVAO.I.C.G.H.G.
10.699.212.7At2g21850816721protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
10.599.2419.1At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
10.499.221.3At1g12160837768flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
10.399.2272.4At1g11580837701PMEPCRA (METHYLESTERASE PCR A)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMOO.I.C.G.H.G.
10.399.2164.3At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.O.I.C.G.H.G.
10.399.263.3At2g30500817600kinase interacting family proteinF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
10.399.228.3At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
10.399.222.5At5g44460834473calcium-binding protein, putativeF:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOBO.I.C.G.H.G.
10.399.27.9At1g61480842442S-locus protein kinase, putativeF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.299.227.0At1g31050839991transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
10.299.27.4At5g45210834557disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAFO.I.C.G.H.G.
10.199.273.4At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.O.I.C.G.H.G.
10.099.2292.5At5g53460835427GLT1NADH-dependent glutamate synthaseO.I.C.G.H.G.
10.099.212.1At4g10550826647subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
9.999.195.5At5g66690836802UGT72E2UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.O.I.C.G.H.G.
9.999.156.0At2g41380818736embryo-abundant protein-relatedF:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMAO.I.C.G.H.G.
9.999.143.7At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMO.I.C.G.H.G.
9.999.18.0At5g50300835095xanthine/uracil/vitamin C permease family proteinF:transporter activity;P:transport;C:membrane;BOFAPMO.I.C.G.H.G.



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