CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131234

Assay name AtGen_6-0122_Control-Roots-0.5h_Rep2

GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
41.3 99.8 34.1 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
28.0 99.7 57.5 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
24.0 99.6 42.0 At1g01190 839233 CYP78A8 member of CYP78A O.I. C.G. H.G.
23.8 99.6 30.8 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO O.I. C.G. H.G.
21.1 99.6 122.5 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
21.0 99.6 35.5 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
20.5 99.6 16.8 At1g51840 841611 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.4 99.5 71.0 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
18.3 99.5 27.8 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
17.9 99.5 122.0 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
17.9 99.5 26.9 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
16.7 99.5 207.1 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM O.I. C.G. H.G.
16.7 99.5 100.9 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
16.6 99.5 80.8 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
16.3 99.5 102.3 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
15.7 99.5 53.1 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.4 99.5 33.2 At1g02220 839476 ANAC003 (Arabidopsis NAC domain containing protein 3) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF O.I. C.G. H.G.
15.3 99.4 224.7 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. O.I. C.G. H.G.
15.3 99.4 65.6 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
14.6 99.4 91.7 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
14.6 99.4 16.4 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
14.5 99.4 52.8 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM O.I. C.G. H.G.
14.5 99.4 38.3 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
13.8 99.4 24.5 At1g12160 837768 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
13.8 99.4 21.1 At1g62280 842525 SLAH1 (SLAC1 HOMOLOGUE 1) Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane. O.I. C.G. H.G.
13.8 99.4 8.3 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB O.I. C.G. H.G.
13.4 99.4 84.7 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. O.I. C.G. H.G.
13.3 99.4 101.9 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
12.9 99.3 24.3 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
12.7 99.3 5.3 At2g13910 3768458 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.6 99.3 54.7 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
12.6 99.3 20.4 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.5 99.3 49.3 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.3 99.3 109.2 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
12.3 99.3 15.2 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
12.1 99.3 81.4 At1g16300 838199 GAPCP-2 F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA O.I. C.G. H.G.
12.1 99.3 7.6 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
12.0 99.3 10.5 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.6 99.3 7.0 At2g37820 818359 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
11.5 99.3 111.6 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
11.4 99.3 91.5 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.2 99.2 38.3 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
11.1 99.2 28.1 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA O.I. C.G. H.G.
11.1 99.2 22.0 At5g12480 831123 CPK7 (calmodulin-domain protein kinase 7) calmodulin-domain protein kinase CDPK isoform 7 (CPK7) O.I. C.G. H.G.
11.0 99.2 50.1 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 277.1 At1g11580 837701 PMEPCRA (METHYLESTERASE PCR A) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO O.I. C.G. H.G.
10.7 99.2 73.8 At2g33770 817943 PHO2 (PHOSPHATE 2) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. O.I. C.G. H.G.
10.6 99.2 128.0 At5g26280 832697 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM O.I. C.G. H.G.
10.6 99.2 76.1 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. O.I. C.G. H.G.
10.4 99.2 97.8 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
10.4 99.2 65.3 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
10.3 99.2 17.7 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
10.3 99.2 13.1 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
10.2 99.2 54.8 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 17.3 At1g56680 842124 glycoside hydrolase family 19 protein F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
10.1 99.2 7.0 At1g53990 841837 GLIP3 Contains lipase signature motif and GDSL domain. O.I. C.G. H.G.
10.0 99.2 76.7 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. O.I. C.G. H.G.
10.0 99.2 13.8 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. O.I. C.G. H.G.
9.8 99.1 7.1 At1g55430 841990 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
9.7 99.1 14.9 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. O.I. C.G. H.G.
9.6 99.1 76.5 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
9.6 99.1 34.2 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.6 99.1 23.9 At2g25590 817098 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.5 99.1 128.9 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
9.4 99.1 181.7 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
9.4 99.1 55.7 At5g08240 830720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
9.4 99.1 44.4 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
9.4 99.1 43.1 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
9.3 99.1 5.6 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
9.2 99.1 11.9 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 46.4 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
9.1 99.1 38.7 At2g17290 816235 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. O.I. C.G. H.G.
9.1 99.1 33.2 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
9.1 99.1 13.4 At2g22850 816816 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF O.I. C.G. H.G.
9.1 99.1 9.0 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
9.0 99.1 99.6 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
9.0 99.1 14.5 At2g45830 819191 DTA2 (DOWNSTREAM TARGET OF AGL15 2) F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB O.I. C.G. H.G.
9.0 99.1 5.0 At5g02350 831920 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
8.9 99.0 93.4 At2g36290 818200 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA O.I. C.G. H.G.
8.9 99.0 20.7 At1g11080 837649 scpl31 (serine carboxypeptidase-like 31) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
8.8 99.0 161.7 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
8.8 99.0 20.9 At1g10990 837642 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.8 99.0 12.9 At1g55740 842023 AtSIP1 (Arabidopsis thaliana seed imbibition 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
8.8 99.0 9.7 At3g30350 822736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.7 99.0 23.2 At5g63930 836514 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
8.7 99.0 13.0 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
8.6 99.0 15.1 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
8.6 99.0 9.1 At1g67710 843096 ARR11 (RESPONSE REGULATOR 11) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
41.3	99.8	34.1	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
28.0	99.7	57.5	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
24.0	99.6	42.0	At1g01190	839233	CYP78A8	member of CYP78A	O.I.	C.G.	H.G.
23.8	99.6	30.8	At2g28780	817427	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;BPO	O.I.	C.G.	H.G.
21.1	99.6	122.5	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
21.0	99.6	35.5	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
20.5	99.6	16.8	At1g51840	841611	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.4	99.5	71.0	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
18.3	99.5	27.8	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
17.9	99.5	122.0	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
17.9	99.5	26.9	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
16.7	99.5	207.1	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	O.I.	C.G.	H.G.
16.7	99.5	100.9	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
16.6	99.5	80.8	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
16.3	99.5	102.3	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
15.7	99.5	53.1	At3g24240	822011	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
15.4	99.5	33.2	At1g02220	839476	ANAC003 (Arabidopsis NAC domain containing protein 3)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
15.3	99.4	224.7	At1g32450	840139	NRT1.5 (NITRATE TRANSPORTER 1.5)	Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.	O.I.	C.G.	H.G.
15.3	99.4	65.6	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
14.6	99.4	91.7	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
14.6	99.4	16.4	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
14.5	99.4	52.8	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	O.I.	C.G.	H.G.
14.5	99.4	38.3	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
13.8	99.4	24.5	At1g12160	837768	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
13.8	99.4	21.1	At1g62280	842525	SLAH1 (SLAC1 HOMOLOGUE 1)	Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.	O.I.	C.G.	H.G.
13.8	99.4	8.3	At1g48510	841272	cytochrome c oxidase assembly protein surfeit-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB	O.I.	C.G.	H.G.
13.4	99.4	84.7	At5g20960	832221	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	Encodes aldehyde oxidase AA01.	O.I.	C.G.	H.G.
13.3	99.4	101.9	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
12.9	99.3	24.3	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
12.7	99.3	5.3	At2g13910	3768458	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.6	99.3	54.7	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
12.6	99.3	20.4	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.5	99.3	49.3	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.3	99.3	109.2	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
12.3	99.3	15.2	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
12.1	99.3	81.4	At1g16300	838199	GAPCP-2	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA	O.I.	C.G.	H.G.
12.1	99.3	7.6	At3g12220	820402	scpl16 (serine carboxypeptidase-like 16)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
12.0	99.3	10.5	At4g19980	827742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.6	99.3	7.0	At2g37820	818359	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
11.5	99.3	111.6	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
11.4	99.3	91.5	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.2	99.2	38.3	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
11.1	99.2	28.1	At5g18860	832004	inosine-uridine preferring nucleoside hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA	O.I.	C.G.	H.G.
11.1	99.2	22.0	At5g12480	831123	CPK7 (calmodulin-domain protein kinase 7)	calmodulin-domain protein kinase CDPK isoform 7 (CPK7)	O.I.	C.G.	H.G.
11.0	99.2	50.1	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	277.1	At1g11580	837701	PMEPCRA (METHYLESTERASE PCR A)	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
10.7	99.2	73.8	At2g33770	817943	PHO2 (PHOSPHATE 2)	Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.	O.I.	C.G.	H.G.
10.6	99.2	128.0	At5g26280	832697	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM	O.I.	C.G.	H.G.
10.6	99.2	76.1	At3g23430	821924	PHO1 (phosphate 1)	mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.	O.I.	C.G.	H.G.
10.4	99.2	97.8	At5g66690	836802	UGT72E2	UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
10.4	99.2	65.3	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
10.3	99.2	17.7	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
10.3	99.2	13.1	At3g29780	822684	RALFL27 (ralf-like 27)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
10.2	99.2	54.8	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	17.3	At1g56680	842124	glycoside hydrolase family 19 protein	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
10.1	99.2	7.0	At1g53990	841837	GLIP3	Contains lipase signature motif and GDSL domain.	O.I.	C.G.	H.G.
10.0	99.2	76.7	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	O.I.	C.G.	H.G.
10.0	99.2	13.8	At5g42630	834270	ATS (ABERRANT TESTA SHAPE)	Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis.	O.I.	C.G.	H.G.
9.8	99.1	7.1	At1g55430	841990	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
9.7	99.1	14.9	At3g45410	823679	lectin protein kinase family protein	encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.	O.I.	C.G.	H.G.
9.6	99.1	76.5	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
9.6	99.1	34.2	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.6	99.1	23.9	At2g25590	817098	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	128.9	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
9.4	99.1	181.7	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
9.4	99.1	55.7	At5g08240	830720	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
9.4	99.1	44.4	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
9.4	99.1	43.1	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
9.3	99.1	5.6	At1g74770	843816	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
9.2	99.1	11.9	At3g60470	825218	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	46.4	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
9.1	99.1	38.7	At2g17290	816235	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family.	O.I.	C.G.	H.G.
9.1	99.1	33.2	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
9.1	99.1	13.4	At2g22850	816816	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF	O.I.	C.G.	H.G.
9.1	99.1	9.0	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
9.0	99.1	99.6	At3g53480	824516	PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
9.0	99.1	14.5	At2g45830	819191	DTA2 (DOWNSTREAM TARGET OF AGL15 2)	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVB	O.I.	C.G.	H.G.
9.0	99.1	5.0	At5g02350	831920	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
8.9	99.0	93.4	At2g36290	818200	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endoplasmic reticulum;BPOFA	O.I.	C.G.	H.G.
8.9	99.0	20.7	At1g11080	837649	scpl31 (serine carboxypeptidase-like 31)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
8.8	99.0	161.7	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
8.8	99.0	20.9	At1g10990	837642	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.8	99.0	12.9	At1g55740	842023	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
8.8	99.0	9.7	At3g30350	822736	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.7	99.0	23.2	At5g63930	836514	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
8.7	99.0	13.0	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
8.6	99.0	15.1	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
8.6	99.0	9.1	At1g67710	843096	ARR11 (RESPONSE REGULATOR 11)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	O.I.	C.G.	H.G.

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GSM ID	GSM131234
Assay name	AtGen_6-0122_Control-Roots-0.5h_Rep2
GSE experiment	GSE5620: AtGenExpress: Stress Treatments (Control plants)

Microarray experiments to specifically-expressed genes

GSM ID GSM131234 Assay name AtGen_6-0122_Control-Roots-0.5h_Rep2 GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)

GSM ID GSM131234

Assay name AtGen_6-0122_Control-Roots-0.5h_Rep2

GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)