CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131227

Assay name AtGen_6-0711_Control-Shoots-0.25h_Rep1

GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
27.2 99.7 173.4 At4g37610 829915 BT5 (BTB AND TAZ DOMAIN PROTEIN 5) BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves. O.I. C.G. H.G.
22.4 99.6 26.0 At2g29300 817479 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
21.4 99.6 47.8 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
14.8 99.4 123.6 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
14.6 99.4 28.5 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
14.0 99.4 54.2 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
13.8 99.4 22.8 At1g31920 840082 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
13.6 99.4 104.9 At2g29290 817478 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.8 99.3 86.3 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
11.3 99.3 35.5 At1g66130 842927 oxidoreductase N-terminal domain-containing protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAP O.I. C.G. H.G.
11.0 99.2 41.1 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
10.5 99.2 61.5 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. O.I. C.G. H.G.
10.4 99.2 97.7 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
10.4 99.2 77.1 At3g59060 825075 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. O.I. C.G. H.G.
10.3 99.2 87.4 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
10.1 99.2 40.0 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
10.1 99.2 38.7 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
9.9 99.1 67.7 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
9.8 99.1 35.9 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
9.7 99.1 42.5 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
9.6 99.1 37.1 At1g29510 839828 SAUR68 (SMALL AUXIN UPREGULATED 68) F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
9.5 99.1 108.8 At2g25900 817131 ATCTH putative Cys3His zinc finger protein (ATCTH) mRNA, complete O.I. C.G. H.G.
9.3 99.1 122.9 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
9.3 99.1 33.3 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
9.1 99.1 206.9 At1g74670 843806 gibberellin-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to gibberellin stimulus, response to sucrose stimulus, gibberellic acid mediated signaling, response to glucose stimulus;C:endomembrane system;P O.I. C.G. H.G.
8.9 99.0 56.3 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. O.I. C.G. H.G.
8.7 99.0 35.5 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
8.7 99.0 10.7 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA O.I. C.G. H.G.
8.6 99.0 36.5 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
27.2	99.7	173.4	At4g37610	829915	BT5 (BTB AND TAZ DOMAIN PROTEIN 5)	BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.	O.I.	C.G.	H.G.
22.4	99.6	26.0	At2g29300	817479	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
21.4	99.6	47.8	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
14.8	99.4	123.6	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
14.6	99.4	28.5	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
14.0	99.4	54.2	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
13.8	99.4	22.8	At1g31920	840082	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
13.6	99.4	104.9	At2g29290	817478	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.8	99.3	86.3	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
11.3	99.3	35.5	At1g66130	842927	oxidoreductase N-terminal domain-containing protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAP	O.I.	C.G.	H.G.
11.0	99.2	41.1	At2g32100	817770	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
10.5	99.2	61.5	At1g42550	840860	PMI1 (PLASTID MOVEMENT IMPAIRED1)	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.	O.I.	C.G.	H.G.
10.4	99.2	97.7	At5g06980	830589	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
10.4	99.2	77.1	At3g59060	825075	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	O.I.	C.G.	H.G.
10.3	99.2	87.4	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
10.1	99.2	40.0	At4g01330	828117	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
10.1	99.2	38.7	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.9	99.1	67.7	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
9.8	99.1	35.9	At3g44630	823589	disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
9.7	99.1	42.5	At1g02660	839544	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
9.6	99.1	37.1	At1g29510	839828	SAUR68 (SMALL AUXIN UPREGULATED 68)	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	108.8	At2g25900	817131	ATCTH	putative Cys3His zinc finger protein (ATCTH) mRNA, complete	O.I.	C.G.	H.G.
9.3	99.1	122.9	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
9.3	99.1	33.3	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
9.1	99.1	206.9	At1g74670	843806	gibberellin-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to gibberellin stimulus, response to sucrose stimulus, gibberellic acid mediated signaling, response to glucose stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
8.9	99.0	56.3	At4g19530	827695	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.	O.I.	C.G.	H.G.
8.7	99.0	35.5	At1g18620	838443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
8.7	99.0	10.7	At4g19510	827692	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA	O.I.	C.G.	H.G.
8.6	99.0	36.5	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM131227
Assay name	AtGen_6-0711_Control-Shoots-0.25h_Rep1
GSE experiment	GSE5620: AtGenExpress: Stress Treatments (Control plants)

Microarray experiments to specifically-expressed genes

GSM ID GSM131227 Assay name AtGen_6-0711_Control-Shoots-0.25h_Rep1 GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)

GSM ID GSM131227

Assay name AtGen_6-0711_Control-Shoots-0.25h_Rep1

GSE experiment GSE5620: AtGenExpress: Stress Treatments (Control plants)