Microarray experiments to specifically-expressed genes

GSM ID GSM131216
Assay name AtGen_D-26_1-FS_REP2_ATH1
GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
67.999.991.1At5g37790833757protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
63.999.8322.6At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
63.599.826.0At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
62.899.870.9At5g52250835301transducin family protein / WD-40 repeat family proteinEncodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.O.I.C.G.H.G.
54.699.8145.0At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
53.299.846.7At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).O.I.C.G.H.G.
52.299.884.4At2g02950814823PKS1 (PHYTOCHROME KINASE SUBSTRATE 1)Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.O.I.C.G.H.G.
50.799.8208.4At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOO.I.C.G.H.G.
50.499.829.9At1g06980837208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
49.999.841.8At3g54990824664SMZ (SCHLAFMUTZE)Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.O.I.C.G.H.G.
46.399.8344.5At5g47450834794AtTIP2Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).O.I.C.G.H.G.
45.399.856.1At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.899.8275.6At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
43.099.8176.1At2g34500818013CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).O.I.C.G.H.G.
39.399.8184.7At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
39.299.852.9At1g69570843293Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
38.999.859.6At3g05800819749transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PO.I.C.G.H.G.
37.799.781.0At1g02340839300HFR1 (LONG HYPOCOTYL IN FAR-RED)Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.O.I.C.G.H.G.
37.299.763.1At4g08300826384nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
36.799.7181.2At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
36.699.743.7At2g42900818891-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
36.399.7308.2At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
35.899.721.0At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
35.799.7404.1At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
35.799.761.7At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
35.799.742.5At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.O.I.C.G.H.G.
35.599.7279.5At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
35.399.790.7At3g49790824141ATP bindingF:ATP binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
34.099.7125.3At5g15290831381integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.399.786.6At2g28110817357FRA8 (FRAGILE FIBER 8)Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.O.I.C.G.H.G.
33.299.7122.8At4g01950827165GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3)Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
32.899.799.7At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
32.799.719.2At4g23030828402MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
31.999.7193.5At4g11360826738RHA1BEncodes a putative RING-H2 finger protein RHA1b.O.I.C.G.H.G.
31.799.7231.2At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)O.I.C.G.H.G.
29.399.7255.6At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
29.399.7155.1At2g44130819019kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAVO.I.C.G.H.G.
29.399.7104.7At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.099.753.8At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
27.899.788.9At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
27.099.725.6At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
26.799.736.1At1g52830841717IAA6 (INDOLE-3-ACETIC ACID 6)An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.O.I.C.G.H.G.
26.099.7235.4At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
26.099.7205.9At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
25.999.7114.9At5g04470830326SIM (SIAMESE)Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.O.I.C.G.H.G.
25.599.7194.3At3g52060824369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
25.499.693.0At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
25.399.6134.3At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
25.099.640.5At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
24.899.6222.1At1g22530838859PATL2 (PATELLIN 2)F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVAO.I.C.G.H.G.
24.699.6255.8At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAO.I.C.G.H.G.
24.499.679.0At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
24.399.69.5At3g03830821123auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
24.299.668.9At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionO.I.C.G.H.G.
23.999.6103.6At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
23.899.6135.2At3g15540820793IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)IAA induced protein 19O.I.C.G.H.G.
23.899.616.0At3g48940824055remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFAO.I.C.G.H.G.
23.699.643.8At4g32070829338octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:vacuole;MOPFBAVO.I.C.G.H.G.
23.699.631.9At3g52480824413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
23.399.6386.0At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
23.399.686.6At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
23.399.656.1At3g18200821347nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
23.299.6146.4At3g06850819869BCE2dihydrolipoamide branched chain acyltransferaseO.I.C.G.H.G.
23.099.670.7At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
22.999.639.7At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).O.I.C.G.H.G.
22.699.613.5At3g52540824420OFP18 (OVATE FAMILY PROTEIN 18)F:unknown;P:biological_process unknown;C:chloroplast;MPOFO.I.C.G.H.G.
22.599.67.0At4g18000827525unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.399.6171.0At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFO.I.C.G.H.G.
21.899.679.8At1g76240843957unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;PMOO.I.C.G.H.G.
21.399.6215.2At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.O.I.C.G.H.G.
21.399.658.5At1g22550838861proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
21.299.6247.5At2g39310818516JAL22 (JACALIN-RELATED LECTIN 22)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
20.699.671.6At5g04530830332KCS19 (3-KETOACYL-COA SYNTHASE 19)Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
20.599.6203.8At5g64570836578XYL4Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.O.I.C.G.H.G.
20.599.687.7At1g18330838413EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)EARLY-PHYTOCHROME-RESPONSIVE1O.I.C.G.H.G.
20.199.677.0At5g16590831521LRR1F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, response to symbiotic fungus;C:plasma membrane, membrane, plant-type cell wall;PMOBFVAO.I.C.G.H.G.
20.199.625.6At5g02170831896amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.C.G.H.G.
20.099.636.6At1g78260844161RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
19.899.632.9At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
19.799.617.4At4g29140829035MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
19.699.683.4At1g61900842486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
19.599.6112.6At2g34070817968unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.599.634.4At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
19.299.6182.6At1g21920838794MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFO.I.C.G.H.G.
19.299.623.0At4g30400829163zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
19.199.6228.1At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
19.099.5161.2At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
18.799.590.2At5g20270832149HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1)heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptorsO.I.C.G.H.G.
18.599.548.4At3g10910820261zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
18.499.5266.4At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)O.I.C.G.H.G.
18.499.5158.3At3g10740820243ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.O.I.C.G.H.G.
18.499.574.2At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
18.499.59.6At5g66260836758auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
18.399.5124.4At5g43760834398KCS20 (3-KETOACYL-COA SYNTHASE 20)Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
18.399.577.0At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
18.399.521.5At1g55240841967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
18.299.578.3At4g35470829699leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAVO.I.C.G.H.G.
18.199.557.2At4g33750--O.I.C.G.H.G.
18.099.538.8At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
18.099.519.0At4g19380827679alcohol oxidase-relatedF:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage