Microarray experiments to specifically-expressed genes

GSM ID GSM131210
Assay name AtGen_D-44_3-RS_REP3_ATH1
GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
85.999.9181.8At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
83.699.929.8At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
81.899.9365.0At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
76.199.996.5At5g37790833757protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
75.099.9232.6At2g34500818013CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).O.I.C.G.H.G.
70.599.9245.8At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOO.I.C.G.H.G.
68.299.952.9At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).O.I.C.G.H.G.
61.999.8169.2At5g15290831381integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
58.999.855.4At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
55.499.862.9At1g69570843293Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
55.299.8129.3At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
54.399.8157.2At4g01950827165GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3)Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
53.299.8165.4At5g04120830290phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
50.099.8294.6At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
43.499.8309.2At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
43.299.827.7At1g06980837208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
42.699.8330.6At5g47450834794AtTIP2Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).O.I.C.G.H.G.
42.399.824.7At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
41.699.822.6At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
41.499.853.6At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.299.896.2At2g28110817357FRA8 (FRAGILE FIBER 8)Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.O.I.C.G.H.G.
41.199.826.2At4g14380827082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
40.899.836.4At5g02170831896amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.C.G.H.G.
39.999.873.8At2g02950814823PKS1 (PHYTOCHROME KINASE SUBSTRATE 1)Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.O.I.C.G.H.G.
38.799.882.0At1g02340839300HFR1 (LONG HYPOCOTYL IN FAR-RED)Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.O.I.C.G.H.G.
38.299.8182.1At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
38.199.8288.1At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.O.I.C.G.H.G.
37.699.740.3At3g52480824413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.699.795.4At5g04530830332KCS19 (3-KETOACYL-COA SYNTHASE 19)Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
35.799.7404.0At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
35.399.761.4At4g08300826384nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
35.299.7219.7At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
34.799.7272.0At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
34.599.793.9At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
33.999.7297.9At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
33.699.7223.3At3g52060824369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
33.399.751.9At4g32070829338octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:vacuole;MOPFBAVO.I.C.G.H.G.
33.399.746.7At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
32.999.7235.5At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)O.I.C.G.H.G.
32.399.779.7At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionO.I.C.G.H.G.
31.899.7161.4At2g44130819019kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAVO.I.C.G.H.G.
31.799.718.9At4g23030828402MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
31.399.7191.6At4g11360826738RHA1BEncodes a putative RING-H2 finger protein RHA1b.O.I.C.G.H.G.
30.899.774.7At4g33750--O.I.C.G.H.G.
30.899.728.0At1g55240841967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
30.799.7107.4At1g18330838413EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)EARLY-PHYTOCHROME-RESPONSIVE1O.I.C.G.H.G.
30.199.769.5At1g22550838861proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
30.099.79.2At3g59440825113calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBVO.I.C.G.H.G.
29.999.755.6At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
29.699.777.6At3g49360824098glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMPO.I.C.G.H.G.
29.699.772.7At4g17470827458palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
29.399.760.9At3g10910820261zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
29.099.7242.5At5g64570836578XYL4Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.O.I.C.G.H.G.
27.999.711.8At5g66260836758auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
27.899.771.5At2g34490818012CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.O.I.C.G.H.G.
27.899.750.4At5g55970835695zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFVO.I.C.G.H.G.
27.799.7231.6At1g04250839568AXR3 (AUXIN RESISTANT 3)Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.H.G.
27.799.748.4At1g56010842052NAC1Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)O.I.C.G.H.G.
27.699.7157.0At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
27.099.7245.4At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
27.099.7232.2At1g22530838859PATL2 (PATELLIN 2)F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVAO.I.C.G.H.G.
26.999.737.6At1g18870838468ICS2 (ISOCHORISMATE SYNTHASE 2)Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).O.I.C.G.H.G.
26.499.7265.2At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAO.I.C.G.H.G.
26.499.734.3At1g48260841246CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).O.I.C.G.H.G.
26.399.743.3At2g27360817279lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
26.399.735.9At1g52830841717IAA6 (INDOLE-3-ACETIC ACID 6)An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.O.I.C.G.H.G.
26.299.792.1At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
26.199.787.3At1g76240843957unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;PMOO.I.C.G.H.G.
25.899.786.3At1g07720837286KCS3 (3-KETOACYL-COA SYNTHASE 3)Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
25.899.722.8At4g19380827679alcohol oxidase-relatedF:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
25.699.782.7At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
25.699.746.2At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
25.099.658.1At3g18200821347nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
24.999.696.6At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.799.6193.3At1g25230839105purple acid phosphatase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
24.799.644.4At5g52250835301transducin family protein / WD-40 repeat family proteinEncodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.O.I.C.G.H.G.
24.499.641.0At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).O.I.C.G.H.G.
23.999.660.2At2g25160817054CYP82F1member of CYP82FO.I.C.G.H.G.
23.999.636.5At1g14240837985nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
23.699.698.0At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
23.499.6268.1At2g17500816256auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBAO.I.C.G.H.G.
23.499.650.0At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
23.299.6258.9At2g39310818516JAL22 (JACALIN-RELATED LECTIN 22)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
23.199.6101.8At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
23.199.671.0At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
23.099.680.9At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
22.899.694.9At4g28040828919nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
22.799.686.9At1g67030843022ZFP6 (ZINC FINGER PROTEIN 6)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
22.699.6191.8At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
22.699.6172.0At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFO.I.C.G.H.G.
22.699.616.0At1g47610841170transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
22.599.6174.9At3g10740820243ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.O.I.C.G.H.G.
22.499.621.0At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
22.399.6142.7At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
22.099.673.3At1g04220839578KCS2 (3-KETOACYL-COA SYNTHASE 2)Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
22.099.633.4At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.O.I.C.G.H.G.
21.999.641.1At3g26300822234CYP71B34putative cytochrome P450O.I.C.G.H.G.
21.899.6373.2At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
21.899.6121.3At1g75900843923family II extracellular lipase 3 (EXL3)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
21.699.6107.2At5g37260833700RVE2 (REVEILLE 2)Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.O.I.C.G.H.G.



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