CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131200

Assay name AtGen_D-34_3-FL_REP3_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
135.4 99.9 93.1 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
108.9 99.9 28.3 At5g43840 834406 AT-HSFA6A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
87.8 99.9 62.5 At5g63450 836464 CYP94B1 member of CYP94B O.I. C.G. H.G.
81.1 99.9 101.4 At3g10910 820261 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
74.7 99.9 40.6 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
69.7 99.9 224.2 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). O.I. C.G. H.G.
63.0 99.8 64.2 At1g72140 843545 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
56.3 99.8 44.4 At3g54990 824664 SMZ (SCHLAFMUTZE) Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
55.6 99.8 144.3 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
54.4 99.8 144.7 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO O.I. C.G. H.G.
53.2 99.8 96.2 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
52.9 99.8 52.7 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). O.I. C.G. H.G.
51.7 99.8 290.2 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
50.7 99.8 78.7 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
48.5 99.8 89.5 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. O.I. C.G. H.G.
47.5 99.8 92.1 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
47.4 99.8 22.3 At5g04330 830312 cytochrome P450, putative / ferulate-5-hydroxylase, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV O.I. C.G. H.G.
47.0 99.8 19.5 At3g52540 824420 OFP18 (OVATE FAMILY PROTEIN 18) F:unknown;P:biological_process unknown;C:chloroplast;MPOF O.I. C.G. H.G.
46.0 99.8 56.2 At4g36380 829790 ROT3 (ROTUNDIFOLIA 3) Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). O.I. C.G. H.G.
45.5 99.8 25.1 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
45.3 99.8 85.2 At1g22550 838861 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
44.0 99.8 200.6 At4g35060 829658 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
42.2 99.8 328.9 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
41.9 99.8 189.5 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
41.2 99.8 301.3 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. C.G. H.G.
40.7 99.8 86.4 At2g34490 818012 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. O.I. C.G. H.G.
40.2 99.8 77.2 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
40.2 99.8 28.1 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
38.9 99.8 76.7 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
37.9 99.8 66.2 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
37.6 99.7 111.8 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
36.8 99.7 50.4 At3g52370 824402 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
36.6 99.7 39.7 At3g52480 824413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.1 99.7 108.7 At1g79270 844267 ECT8 (evolutionarily conserved C-terminal region 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
35.5 99.7 175.6 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
34.5 99.7 92.6 At5g04530 830332 KCS19 (3-KETOACYL-COA SYNTHASE 19) Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
32.6 99.7 195.6 At4g11360 826738 RHA1B Encodes a putative RING-H2 finger protein RHA1b. O.I. C.G. H.G.
32.6 99.7 51.1 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
32.1 99.7 130.8 At1g15100 838073 RHA2A Encodes a putative RING-H2 finger protein RHA2a. O.I. C.G. H.G.
31.7 99.7 115.3 At4g15630 827240 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
31.2 99.7 120.2 At5g15290 831381 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.0 99.7 163.3 At5g57785 835887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
31.0 99.7 51.0 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
30.8 99.7 50.0 At4g31140 829242 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall;PFOB O.I. C.G. H.G.
30.7 99.7 47.5 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. O.I. C.G. H.G.
30.2 99.7 44.2 At1g32690 840163 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
30.0 99.7 232.2 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
29.5 99.7 56.2 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
28.5 99.7 240.4 At5g64570 836578 XYL4 Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. O.I. C.G. H.G.
28.4 99.7 39.7 At1g14240 837985 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
27.7 99.7 355.8 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
27.5 99.7 95.8 At4g08150 826364 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate. O.I. C.G. H.G.
26.5 99.7 147.4 At2g44130 819019 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV O.I. C.G. H.G.
26.4 99.7 276.2 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
26.4 99.7 36.6 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. O.I. C.G. H.G.
25.5 99.7 32.3 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). O.I. C.G. H.G.
25.4 99.6 114.3 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
25.3 99.6 89.8 At1g55265 841971 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PBO O.I. C.G. H.G.
25.1 99.6 25.2 At4g23450 828444 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:chloroplast;PMOFV O.I. C.G. H.G.
24.9 99.6 136.4 At3g21560 821710 UGT84A2 Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). O.I. C.G. H.G.
24.9 99.6 44.9 At4g32070 829338 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:vacuole;MOPFBAV O.I. C.G. H.G.
24.6 99.6 304.3 At1g62660 842563 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMA O.I. C.G. H.G.
24.6 99.6 97.3 At3g14770 820705 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
24.5 99.6 89.1 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
24.0 99.6 226.1 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
23.8 99.6 270.4 At2g17500 816256 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA O.I. C.G. H.G.
23.5 99.6 22.4 At4g36830 829836 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV O.I. C.G. H.G.
23.1 99.6 62.9 At3g30180 822709 BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2) Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control. O.I. C.G. H.G.
22.9 99.6 52.3 At5g15780 831434 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
22.8 99.6 381.9 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
22.7 99.6 79.8 At5g01520 831747 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. C.G. H.G.
22.6 99.6 175.9 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
22.5 99.6 80.8 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
22.4 99.6 182.2 At3g52060 824369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
22.3 99.6 67.2 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. O.I. C.G. H.G.
21.9 99.6 42.7 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
21.5 99.6 96.6 At5g20270 832149 HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors O.I. C.G. H.G.
21.5 99.6 19.5 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.4 99.6 248.6 At1g68530 843182 KCS6 (3-KETOACYL-COA SYNTHASE 6) Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
21.2 99.6 161.6 At1g17840 838363 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix. O.I. C.G. H.G.
21.1 99.6 23.1 At1g55240 841967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP O.I. C.G. H.G.
20.6 99.6 211.6 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. O.I. C.G. H.G.
20.5 99.6 95.9 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
20.3 99.6 61.9 At1g14700 838035 PAP3 (PURPLE ACID PHOSPHATASE 3) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF O.I. C.G. H.G.
20.2 99.6 142.3 At4g04840 825821 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
20.1 99.6 114.4 At2g34070 817968 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.0 99.6 298.2 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
20.0 99.6 169.8 At4g25640 828669 MATE efflux family protein F:antiporter activity, drug transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFAM O.I. C.G. H.G.
20.0 99.6 58.7 At2g45720 819180 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:unknown;PMFOBA O.I. C.G. H.G.
19.9 99.6 69.8 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
19.9 99.6 41.3 At2g33990 817960 iqd9 (IQ-domain 9) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POM O.I. C.G. H.G.
19.8 99.6 66.7 At2g28110 817357 FRA8 (FRAGILE FIBER 8) Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. O.I. C.G. H.G.
19.7 99.6 30.7 At3g50630 824226 KRP2 (KIP-RELATED PROTEIN 2) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation. O.I. C.G. H.G.
19.4 99.6 25.1 At4g40080 830171 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMO O.I. C.G. H.G.
19.3 99.6 37.1 At2g27360 817279 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
19.2 99.6 59.0 At4g33750 - - O.I. C.G. H.G.
19.2 99.6 45.2 At5g04770 830355 CAT6 (CATIONIC AMINO ACID TRANSPORTER 6) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane. O.I. C.G. H.G.
18.9 99.5 212.7 At1g51500 841575 CER5 (ECERIFERUM 5) Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. O.I. C.G. H.G.
18.9 99.5 17.7 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
18.7 99.5 275.1 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
135.4	99.9	93.1	At3g48350	823993	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
108.9	99.9	28.3	At5g43840	834406	AT-HSFA6A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
87.8	99.9	62.5	At5g63450	836464	CYP94B1	member of CYP94B	O.I.	C.G.	H.G.
81.1	99.9	101.4	At3g10910	820261	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
74.7	99.9	40.6	At4g16750	827379	DRE-binding transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
69.7	99.9	224.2	At2g34500	818013	CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).	O.I.	C.G.	H.G.
63.0	99.8	64.2	At1g72140	843545	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
56.3	99.8	44.4	At3g54990	824664	SMZ (SCHLAFMUTZE)	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
55.6	99.8	144.3	At4g25830	828688	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
54.4	99.8	144.7	At3g48970	824058	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO	O.I.	C.G.	H.G.
53.2	99.8	96.2	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
52.9	99.8	52.7	At1g18870	838468	ICS2 (ISOCHORISMATE SYNTHASE 2)	Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).	O.I.	C.G.	H.G.
51.7	99.8	290.2	At2g43050	818907	ATPMEPCRD	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
50.7	99.8	78.7	At5g37790	833757	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
48.5	99.8	89.5	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	O.I.	C.G.	H.G.
47.5	99.8	92.1	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
47.4	99.8	22.3	At5g04330	830312	cytochrome P450, putative / ferulate-5-hydroxylase, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV	O.I.	C.G.	H.G.
47.0	99.8	19.5	At3g52540	824420	OFP18 (OVATE FAMILY PROTEIN 18)	F:unknown;P:biological_process unknown;C:chloroplast;MPOF	O.I.	C.G.	H.G.
46.0	99.8	56.2	At4g36380	829790	ROT3 (ROTUNDIFOLIA 3)	Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).	O.I.	C.G.	H.G.
45.5	99.8	25.1	At1g78440	844180	ATGA2OX1 (gibberellin 2-oxidase 1)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
45.3	99.8	85.2	At1g22550	838861	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
44.0	99.8	200.6	At4g35060	829658	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.2	99.8	328.9	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
41.9	99.8	189.5	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
41.2	99.8	301.3	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	C.G.	H.G.
40.7	99.8	86.4	At2g34490	818012	CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.	O.I.	C.G.	H.G.
40.2	99.8	77.2	At5g23730	832438	nucleotide binding	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
40.2	99.8	28.1	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
38.9	99.8	76.7	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
37.9	99.8	66.2	At2g44940	819103	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
37.6	99.7	111.8	At1g67030	843022	ZFP6 (ZINC FINGER PROTEIN 6)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
36.8	99.7	50.4	At3g52370	824402	FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)	F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
36.6	99.7	39.7	At3g52480	824413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.1	99.7	108.7	At1g79270	844267	ECT8 (evolutionarily conserved C-terminal region 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
35.5	99.7	175.6	At4g37220	829876	stress-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.5	99.7	92.6	At5g04530	830332	KCS19 (3-KETOACYL-COA SYNTHASE 19)	Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
32.6	99.7	195.6	At4g11360	826738	RHA1B	Encodes a putative RING-H2 finger protein RHA1b.	O.I.	C.G.	H.G.
32.6	99.7	51.1	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
32.1	99.7	130.8	At1g15100	838073	RHA2A	Encodes a putative RING-H2 finger protein RHA2a.	O.I.	C.G.	H.G.
31.7	99.7	115.3	At4g15630	827240	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
31.2	99.7	120.2	At5g15290	831381	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.0	99.7	163.3	At5g57785	835887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
31.0	99.7	51.0	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
30.8	99.7	50.0	At4g31140	829242	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall;PFOB	O.I.	C.G.	H.G.
30.7	99.7	47.5	At2g22770	816807	NAI1	regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.	O.I.	C.G.	H.G.
30.2	99.7	44.2	At1g32690	840163	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
30.0	99.7	232.2	At1g28660	839766	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
29.5	99.7	56.2	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
28.5	99.7	240.4	At5g64570	836578	XYL4	Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	O.I.	C.G.	H.G.
28.4	99.7	39.7	At1g14240	837985	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
27.7	99.7	355.8	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
27.5	99.7	95.8	At4g08150	826364	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.	O.I.	C.G.	H.G.
26.5	99.7	147.4	At2g44130	819019	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV	O.I.	C.G.	H.G.
26.4	99.7	276.2	At2g39310	818516	JAL22 (JACALIN-RELATED LECTIN 22)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
26.4	99.7	36.6	At5g11260	830996	HY5 (ELONGATED HYPOCOTYL 5)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	O.I.	C.G.	H.G.
25.5	99.7	32.3	At4g01680	826853	MYB55 (myb domain protein 55)	Encodes a putative transcription factor (MYB55).	O.I.	C.G.	H.G.
25.4	99.6	114.3	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
25.3	99.6	89.8	At1g55265	841971	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;PBO	O.I.	C.G.	H.G.
25.1	99.6	25.2	At4g23450	828444	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:chloroplast;PMOFV	O.I.	C.G.	H.G.
24.9	99.6	136.4	At3g21560	821710	UGT84A2	Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).	O.I.	C.G.	H.G.
24.9	99.6	44.9	At4g32070	829338	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:vacuole;MOPFBAV	O.I.	C.G.	H.G.
24.6	99.6	304.3	At1g62660	842563	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMA	O.I.	C.G.	H.G.
24.6	99.6	97.3	At3g14770	820705	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
24.5	99.6	89.1	At2g40110	818600	yippee family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
24.0	99.6	226.1	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
23.8	99.6	270.4	At2g17500	816256	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA	O.I.	C.G.	H.G.
23.5	99.6	22.4	At4g36830	829836	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV	O.I.	C.G.	H.G.
23.1	99.6	62.9	At3g30180	822709	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.	O.I.	C.G.	H.G.
22.9	99.6	52.3	At5g15780	831434	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
22.8	99.6	381.9	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
22.7	99.6	79.8	At5g01520	831747	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF	O.I.	C.G.	H.G.
22.6	99.6	175.9	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
22.5	99.6	80.8	At1g07720	837286	KCS3 (3-KETOACYL-COA SYNTHASE 3)	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
22.4	99.6	182.2	At3g52060	824369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
22.3	99.6	67.2	At2g32300	817791	UCC1 (UCLACYANIN 1)	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	O.I.	C.G.	H.G.
21.9	99.6	42.7	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
21.5	99.6	96.6	At5g20270	832149	HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1)	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	O.I.	C.G.	H.G.
21.5	99.6	19.5	At1g06980	837208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.4	99.6	248.6	At1g68530	843182	KCS6 (3-KETOACYL-COA SYNTHASE 6)	Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
21.2	99.6	161.6	At1g17840	838363	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.	O.I.	C.G.	H.G.
21.1	99.6	23.1	At1g55240	841967	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP	O.I.	C.G.	H.G.
20.6	99.6	211.6	At1g01120	839395	KCS1 (3-KETOACYL-COA SYNTHASE 1)	Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.	O.I.	C.G.	H.G.
20.5	99.6	95.9	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
20.3	99.6	61.9	At1g14700	838035	PAP3 (PURPLE ACID PHOSPHATASE 3)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF	O.I.	C.G.	H.G.
20.2	99.6	142.3	At4g04840	825821	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
20.1	99.6	114.4	At2g34070	817968	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.0	99.6	298.2	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
20.0	99.6	169.8	At4g25640	828669	MATE efflux family protein	F:antiporter activity, drug transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFAM	O.I.	C.G.	H.G.
20.0	99.6	58.7	At2g45720	819180	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:unknown;PMFOBA	O.I.	C.G.	H.G.
19.9	99.6	69.8	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
19.9	99.6	41.3	At2g33990	817960	iqd9 (IQ-domain 9)	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POM	O.I.	C.G.	H.G.
19.8	99.6	66.7	At2g28110	817357	FRA8 (FRAGILE FIBER 8)	Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.	O.I.	C.G.	H.G.
19.7	99.6	30.7	At3g50630	824226	KRP2 (KIP-RELATED PROTEIN 2)	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.	O.I.	C.G.	H.G.
19.4	99.6	25.1	At4g40080	830171	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
19.3	99.6	37.1	At2g27360	817279	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
19.2	99.6	59.0	At4g33750		-	-	O.I.	C.G.	H.G.
19.2	99.6	45.2	At5g04770	830355	CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.	O.I.	C.G.	H.G.
18.9	99.5	212.7	At1g51500	841575	CER5 (ECERIFERUM 5)	Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones.	O.I.	C.G.	H.G.
18.9	99.5	17.7	At4g14380	827082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
18.7	99.5	275.1	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.

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GSM ID	GSM131200
Assay name	AtGen_D-34_3-FL_REP3_ATH1
GSE experiment	GSE5617: AtGenExpress: Light treatments

Microarray experiments to specifically-expressed genes

GSM ID GSM131200 Assay name AtGen_D-34_3-FL_REP3_ATH1 GSE experiment GSE5617: AtGenExpress: Light treatments

GSM ID GSM131200

Assay name AtGen_D-34_3-FL_REP3_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments