Microarray experiments to specifically-expressed genes

GSM ID GSM131192
Assay name AtGen_D-25_2-DS_REP2_ATH1
GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
74.099.9347.1At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
72.699.929.9At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
67.799.9221.0At2g34500818013CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).O.I.C.G.H.G.
67.299.8108.7At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
60.899.8153.0At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
54.899.847.4At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).O.I.C.G.H.G.
52.199.8300.8At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
49.199.8354.6At5g47450834794AtTIP2Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).O.I.C.G.H.G.
48.299.8120.8At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
46.199.822.1At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.599.841.3At4g16670827369phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOO.I.C.G.H.G.
42.999.854.6At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.999.8190.8At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
41.999.871.6At5g37790833757protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
40.799.8299.3At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
40.199.8428.1At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
39.699.868.7At5g18060831310auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
39.499.8112.6At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
38.999.8172.9At3g15540820793IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)IAA induced protein 19O.I.C.G.H.G.
38.899.8318.8At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
38.099.8113.8At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
36.899.7181.4At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
36.899.720.4At4g23030828402MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
36.699.723.0At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
36.399.724.6At4g14380827082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
36.299.763.5At2g43060818908transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
34.199.7239.8At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)O.I.C.G.H.G.
31.999.7121.4At5g15290831381integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.899.7161.5At2g44130819019kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAVO.I.C.G.H.G.
31.599.785.7At3g49790824141ATP bindingF:ATP binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.299.7112.7At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
30.499.767.7At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
29.899.7116.4At4g01950827165GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3)Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
28.899.785.8At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
28.899.755.5At4g08300826384nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
28.799.7332.1At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)O.I.C.G.H.G.
28.799.7206.2At3g52060824369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
28.799.738.7At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
28.499.7246.1At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
28.199.7250.3At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
28.099.730.2At5g02170831896amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.C.G.H.G.
26.999.738.4At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
26.899.7151.4At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOO.I.C.G.H.G.
26.699.739.6At4g11610826766C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
26.299.7225.3At1g04250839568AXR3 (AUXIN RESISTANT 3)Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.H.G.
26.199.780.6At5g04530830332KCS19 (3-KETOACYL-COA SYNTHASE 19)Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
25.899.7135.7At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
25.899.733.4At3g52480824413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
25.499.6262.7At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
24.799.6231.9At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.O.I.C.G.H.G.
24.599.665.3At1g02340839300HFR1 (LONG HYPOCOTYL IN FAR-RED)Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.O.I.C.G.H.G.
24.499.674.1At2g28110817357FRA8 (FRAGILE FIBER 8)Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.O.I.C.G.H.G.
24.499.636.0At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
24.299.6264.2At2g39310818516JAL22 (JACALIN-RELATED LECTIN 22)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
24.099.6392.1At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
23.799.661.7At1g22550838861proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
23.699.669.3At3g49360824098glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMPO.I.C.G.H.G.
23.599.67.2At3g483703769684transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
23.399.6215.4At1g22530838859PATL2 (PATELLIN 2)F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVAO.I.C.G.H.G.
22.999.6101.4At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
22.899.6246.1At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAO.I.C.G.H.G.
22.899.633.3At1g52830841717IAA6 (INDOLE-3-ACETIC ACID 6)An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.O.I.C.G.H.G.
22.699.670.2At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
22.699.664.0At4g33750--O.I.C.G.H.G.
22.699.654.5At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.H.G.
22.299.658.7At3g11600820333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.299.623.2At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
22.199.684.6At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
22.199.680.3At1g76240843957unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;PMOO.I.C.G.H.G.
21.799.69.0At3g03830821123auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
21.499.655.5At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
20.999.6165.5At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFO.I.C.G.H.G.
20.999.636.9At4g13790827013auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;POO.I.C.G.H.G.
20.799.646.3At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
20.599.6102.5At5g04470830326SIM (SIAMESE)Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.O.I.C.G.H.G.
20.499.637.5At4g36380829790ROT3 (ROTUNDIFOLIA 3)Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).O.I.C.G.H.G.
20.399.617.3At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPO.I.C.G.H.G.
20.099.614.7At3g48940824055remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFAO.I.C.G.H.G.
19.899.6173.0At1g25230839105purple acid phosphatase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
19.799.634.6At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
19.699.6163.5At3g10740820243ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.O.I.C.G.H.G.
19.699.624.3At1g06850837197AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBVO.I.C.G.H.G.
19.199.6236.9At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.O.I.C.G.H.G.
19.199.6196.6At5g64570836578XYL4Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.O.I.C.G.H.G.
19.199.645.2At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
18.999.554.8At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
18.999.526.4At2g26710817212BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.O.I.C.G.H.G.
18.899.566.3At5g64410836562OPT4 (OLIGOPEPTIDE TRANSPORTER 4)oligopeptide transporterO.I.C.G.H.G.
18.899.545.4At1g64670842775BDG1 (BODYGUARD1)Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.O.I.C.G.H.G.
18.799.5131.4At3g06850819869BCE2dihydrolipoamide branched chain acyltransferaseO.I.C.G.H.G.
18.699.5112.1At1g75900843923family II extracellular lipase 3 (EXL3)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
18.599.5173.8At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
18.599.5161.3At2g17710816280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.499.580.2At2g38750818457ANNAT4 (ANNEXIN ARABIDOPSIS 4)Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.O.I.C.G.H.G.
18.399.531.2At1g17060838276CYP72C1 (CYTOCHROME P450 72C1)Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.O.I.C.G.H.G.
18.299.582.4At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.099.510.2At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
17.699.5232.4At2g17500816256auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBAO.I.C.G.H.G.
17.399.5153.7At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
17.399.571.6At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.



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