CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131183

Assay name AtGen_D-15_1-US_REP1_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.4 99.9 86.0 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
65.1 99.8 325.5 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
61.9 99.8 13.2 At3g59440 825113 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV O.I. C.G. H.G.
56.5 99.8 24.5 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.0 99.8 130.3 At1g65310 842839 XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. O.I. C.G. H.G.
56.0 99.8 42.7 At5g02170 831896 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV O.I. C.G. H.G.
51.6 99.8 132.5 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
50.6 99.8 153.0 At5g15290 831381 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.6 99.8 45.6 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). O.I. C.G. H.G.
50.2 99.8 137.3 At1g18330 838413 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) EARLY-PHYTOCHROME-RESPONSIVE1 O.I. C.G. H.G.
50.1 99.8 190.2 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). O.I. C.G. H.G.
45.2 99.8 28.3 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
43.0 99.8 76.6 At2g02950 814823 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling. O.I. C.G. H.G.
41.4 99.8 45.0 At1g52830 841717 IAA6 (INDOLE-3-ACETIC ACID 6) An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid. O.I. C.G. H.G.
41.2 99.8 45.7 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. O.I. C.G. H.G.
40.4 99.8 40.0 At5g62470 836367 MYB96 (myb domain protein 96) Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. O.I. C.G. H.G.
36.1 99.7 35.6 At3g54990 824664 SMZ (SCHLAFMUTZE) Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
34.7 99.7 245.2 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
33.9 99.7 65.5 At3g10910 820261 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
33.7 99.7 64.2 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
33.5 99.7 76.4 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
33.0 99.7 290.8 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
32.8 99.7 110.8 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.6 99.7 267.8 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. C.G. H.G.
31.8 99.7 53.9 At5g55970 835695 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFV O.I. C.G. H.G.
30.4 99.7 125.1 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
30.0 99.7 161.5 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
30.0 99.7 52.4 At3g05800 819749 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;P O.I. C.G. H.G.
29.5 99.7 32.8 At1g65510 842863 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
29.3 99.7 124.8 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
29.3 99.7 55.0 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
29.2 99.7 252.2 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. O.I. C.G. H.G.
28.9 99.7 98.0 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
28.8 99.7 247.7 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
28.7 99.7 90.5 At1g23030 838911 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV O.I. C.G. H.G.
28.5 99.7 272.8 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). O.I. C.G. H.G.
28.3 99.7 182.2 At4g11360 826738 RHA1B Encodes a putative RING-H2 finger protein RHA1b. O.I. C.G. H.G.
28.0 99.7 18.6 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
27.7 99.7 112.2 At4g01950 827165 GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3) Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. O.I. C.G. H.G.
27.2 99.7 352.4 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
27.0 99.7 104.8 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
26.9 99.7 192.0 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
26.4 99.7 47.1 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
26.2 99.7 68.9 At4g33750 - - O.I. C.G. H.G.
26.0 99.7 110.1 At1g49660 841390 AtCXE5 (Arabidopsis thaliana carboxyesterase 5) Encodes a protein with carboxylesterase whose activity was tested using pNA. O.I. C.G. H.G.
25.8 99.7 99.6 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO O.I. C.G. H.G.
25.4 99.6 221.6 At1g04250 839568 AXR3 (AUXIN RESISTANT 3) Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. O.I. C.G. H.G.
25.3 99.6 44.2 At3g26300 822234 CYP71B34 putative cytochrome P450 O.I. C.G. H.G.
25.1 99.6 36.2 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
25.0 99.6 143.1 At2g44130 819019 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV O.I. C.G. H.G.
24.5 99.6 47.5 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
23.8 99.6 42.2 At2g46270 819235 GBF3 (G-BOX BINDING FACTOR 3) encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3��s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2. O.I. C.G. H.G.
23.8 99.6 19.9 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
23.5 99.6 43.6 At4g32070 829338 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:vacuole;MOPFBAV O.I. C.G. H.G.
23.3 99.6 54.8 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
23.2 99.6 259.1 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
23.1 99.6 62.8 At5g47610 834811 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
22.8 99.6 147.0 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. O.I. C.G. H.G.
22.8 99.6 110.2 At1g15100 838073 RHA2A Encodes a putative RING-H2 finger protein RHA2a. O.I. C.G. H.G.
22.6 99.6 245.1 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA O.I. C.G. H.G.
22.6 99.6 100.3 At1g78100 844146 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.5 99.6 182.7 At3g52060 824369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
22.4 99.6 141.4 At4g18970 827632 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
22.4 99.6 15.9 At4g23030 828402 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
21.6 99.6 55.6 At1g29510 839828 SAUR68 (SMALL AUXIN UPREGULATED 68) F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
21.5 99.6 46.4 At3g51910 824354 AT-HSFA7A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
21.2 99.6 71.3 At1g62770 842576 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.1 99.6 166.5 At3g13720 820581 PRA8 F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF O.I. C.G. H.G.
21.1 99.6 13.0 At3g52540 824420 OFP18 (OVATE FAMILY PROTEIN 18) F:unknown;P:biological_process unknown;C:chloroplast;MPOF O.I. C.G. H.G.
21.0 99.6 216.3 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
21.0 99.6 122.5 At3g54200 824587 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane;P O.I. C.G. H.G.
21.0 99.6 8.3 At2g18970 816414 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.9 99.6 38.6 At1g69570 843293 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
20.7 99.6 47.6 At1g64670 842775 BDG1 (BODYGUARD1) Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself. O.I. C.G. H.G.
20.5 99.6 94.7 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. O.I. C.G. H.G.
20.5 99.6 16.9 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
20.1 99.6 113.7 At4g30290 829152 XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. O.I. C.G. H.G.
19.9 99.6 94.7 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
19.7 99.6 354.7 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
19.6 99.6 122.7 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 O.I. C.G. H.G.
19.5 99.6 66.5 At1g70300 843366 KUP6 potassium transporter O.I. C.G. H.G.
19.3 99.6 243.3 At2g17500 816256 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA O.I. C.G. H.G.
19.1 99.6 55.3 At1g22550 838861 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
19.0 99.5 169.8 At1g25230 839105 purple acid phosphatase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
19.0 99.5 131.8 At4g35060 829658 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
18.8 99.5 158.3 At1g63840 842687 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFV O.I. C.G. H.G.
18.7 99.5 69.1 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
18.6 99.5 245.1 At3g23050 821879 IAA7 (INDOLE-3-ACETIC ACID 7) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. O.I. C.G. H.G.
18.6 99.5 61.6 At3g49360 824098 glucosamine/galactosamine-6-phosphate isomerase family protein F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP O.I. C.G. H.G.
18.6 99.5 28.3 At3g52480 824413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.5 99.5 39.3 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
18.5 99.5 31.1 At2g42900 818891 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
18.4 99.5 63.3 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
18.3 99.5 73.0 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO O.I. C.G. H.G.
18.3 99.5 35.5 At4g36380 829790 ROT3 (ROTUNDIFOLIA 3) Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). O.I. C.G. H.G.
18.2 99.5 76.9 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
18.0 99.5 36.8 At4g03070 828100 AOP1 Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2. O.I. C.G. H.G.
17.9 99.5 163.1 At1g57980 842165 purine permease-related F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
17.6 99.5 83.4 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
17.6 99.5 74.8 At1g55265 841971 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
92.4	99.9	86.0	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
65.1	99.8	325.5	At2g43050	818907	ATPMEPCRD	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
61.9	99.8	13.2	At3g59440	825113	calcium-binding protein, putative	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV	O.I.	C.G.	H.G.
56.5	99.8	24.5	At1g27670	839659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.0	99.8	130.3	At1g65310	842839	XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)	putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.	O.I.	C.G.	H.G.
56.0	99.8	42.7	At5g02170	831896	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV	O.I.	C.G.	H.G.
51.6	99.8	132.5	At5g44440	834471	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
50.6	99.8	153.0	At5g15290	831381	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.6	99.8	45.6	At4g01680	826853	MYB55 (myb domain protein 55)	Encodes a putative transcription factor (MYB55).	O.I.	C.G.	H.G.
50.2	99.8	137.3	At1g18330	838413	EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)	EARLY-PHYTOCHROME-RESPONSIVE1	O.I.	C.G.	H.G.
50.1	99.8	190.2	At2g34500	818013	CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).	O.I.	C.G.	H.G.
45.2	99.8	28.3	At1g06980	837208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
43.0	99.8	76.6	At2g02950	814823	PKS1 (PHYTOCHROME KINASE SUBSTRATE 1)	Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.	O.I.	C.G.	H.G.
41.4	99.8	45.0	At1g52830	841717	IAA6 (INDOLE-3-ACETIC ACID 6)	An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.	O.I.	C.G.	H.G.
41.2	99.8	45.7	At5g11260	830996	HY5 (ELONGATED HYPOCOTYL 5)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	O.I.	C.G.	H.G.
40.4	99.8	40.0	At5g62470	836367	MYB96 (myb domain protein 96)	Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid.	O.I.	C.G.	H.G.
36.1	99.7	35.6	At3g54990	824664	SMZ (SCHLAFMUTZE)	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
34.7	99.7	245.2	At5g60660	836187	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
33.9	99.7	65.5	At3g10910	820261	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
33.7	99.7	64.2	At5g37790	833757	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
33.5	99.7	76.4	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
33.0	99.7	290.8	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
32.8	99.7	110.8	At4g25830	828688	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.6	99.7	267.8	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	C.G.	H.G.
31.8	99.7	53.9	At5g55970	835695	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFV	O.I.	C.G.	H.G.
30.4	99.7	125.1	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
30.0	99.7	161.5	At4g37220	829876	stress-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.0	99.7	52.4	At3g05800	819749	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;P	O.I.	C.G.	H.G.
29.5	99.7	32.8	At1g65510	842863	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
29.3	99.7	124.8	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
29.3	99.7	55.0	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
29.2	99.7	252.2	At1g01120	839395	KCS1 (3-KETOACYL-COA SYNTHASE 1)	Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.	O.I.	C.G.	H.G.
28.9	99.7	98.0	At1g67030	843022	ZFP6 (ZINC FINGER PROTEIN 6)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
28.8	99.7	247.7	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
28.7	99.7	90.5	At1g23030	838911	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV	O.I.	C.G.	H.G.
28.5	99.7	272.8	At5g10430	830907	AGP4 (ARABINOGALACTAN PROTEIN 4)	Encodes arabinogalactan-protein (AGP4).	O.I.	C.G.	H.G.
28.3	99.7	182.2	At4g11360	826738	RHA1B	Encodes a putative RING-H2 finger protein RHA1b.	O.I.	C.G.	H.G.
28.0	99.7	18.6	At2g19660	816485	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
27.7	99.7	112.2	At4g01950	827165	GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3)	Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.	O.I.	C.G.	H.G.
27.2	99.7	352.4	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
27.0	99.7	104.8	At4g16515	827350	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.9	99.7	192.0	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
26.4	99.7	47.1	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
26.2	99.7	68.9	At4g33750		-	-	O.I.	C.G.	H.G.
26.0	99.7	110.1	At1g49660	841390	AtCXE5 (Arabidopsis thaliana carboxyesterase 5)	Encodes a protein with carboxylesterase whose activity was tested using pNA.	O.I.	C.G.	H.G.
25.8	99.7	99.6	At3g48970	824058	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO	O.I.	C.G.	H.G.
25.4	99.6	221.6	At1g04250	839568	AXR3 (AUXIN RESISTANT 3)	Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	O.I.	C.G.	H.G.
25.3	99.6	44.2	At3g26300	822234	CYP71B34	putative cytochrome P450	O.I.	C.G.	H.G.
25.1	99.6	36.2	At3g14370	820658	WAG2	The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
25.0	99.6	143.1	At2g44130	819019	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV	O.I.	C.G.	H.G.
24.5	99.6	47.5	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
23.8	99.6	42.2	At2g46270	819235	GBF3 (G-BOX BINDING FACTOR 3)	encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3��s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.	O.I.	C.G.	H.G.
23.8	99.6	19.9	At4g14380	827082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
23.5	99.6	43.6	At4g32070	829338	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:vacuole;MOPFBAV	O.I.	C.G.	H.G.
23.3	99.6	54.8	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
23.2	99.6	259.1	At2g39310	818516	JAL22 (JACALIN-RELATED LECTIN 22)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
23.1	99.6	62.8	At5g47610	834811	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
22.8	99.6	147.0	At4g27260	828834	WES1	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.	O.I.	C.G.	H.G.
22.8	99.6	110.2	At1g15100	838073	RHA2A	Encodes a putative RING-H2 finger protein RHA2a.	O.I.	C.G.	H.G.
22.6	99.6	245.1	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	O.I.	C.G.	H.G.
22.6	99.6	100.3	At1g78100	844146	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.5	99.6	182.7	At3g52060	824369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
22.4	99.6	141.4	At4g18970	827632	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
22.4	99.6	15.9	At4g23030	828402	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
21.6	99.6	55.6	At1g29510	839828	SAUR68 (SMALL AUXIN UPREGULATED 68)	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
21.5	99.6	46.4	At3g51910	824354	AT-HSFA7A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
21.2	99.6	71.3	At1g62770	842576	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.1	99.6	166.5	At3g13720	820581	PRA8	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF	O.I.	C.G.	H.G.
21.1	99.6	13.0	At3g52540	824420	OFP18 (OVATE FAMILY PROTEIN 18)	F:unknown;P:biological_process unknown;C:chloroplast;MPOF	O.I.	C.G.	H.G.
21.0	99.6	216.3	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
21.0	99.6	122.5	At3g54200	824587	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane;P	O.I.	C.G.	H.G.
21.0	99.6	8.3	At2g18970	816414	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.9	99.6	38.6	At1g69570	843293	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
20.7	99.6	47.6	At1g64670	842775	BDG1 (BODYGUARD1)	Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.	O.I.	C.G.	H.G.
20.5	99.6	94.7	At2g43290	818931	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	Encodes calmodulin-like MSS3.	O.I.	C.G.	H.G.
20.5	99.6	16.9	At1g78440	844180	ATGA2OX1 (gibberellin 2-oxidase 1)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
20.1	99.6	113.7	At4g30290	829152	XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)	putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.	O.I.	C.G.	H.G.
19.9	99.6	94.7	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
19.7	99.6	354.7	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
19.6	99.6	122.7	At3g15540	820793	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	IAA induced protein 19	O.I.	C.G.	H.G.
19.5	99.6	66.5	At1g70300	843366	KUP6	potassium transporter	O.I.	C.G.	H.G.
19.3	99.6	243.3	At2g17500	816256	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA	O.I.	C.G.	H.G.
19.1	99.6	55.3	At1g22550	838861	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
19.0	99.5	169.8	At1g25230	839105	purple acid phosphatase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
19.0	99.5	131.8	At4g35060	829658	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.8	99.5	158.3	At1g63840	842687	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
18.7	99.5	69.1	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
18.6	99.5	245.1	At3g23050	821879	IAA7 (INDOLE-3-ACETIC ACID 7)	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	O.I.	C.G.	H.G.
18.6	99.5	61.6	At3g49360	824098	glucosamine/galactosamine-6-phosphate isomerase family protein	F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP	O.I.	C.G.	H.G.
18.6	99.5	28.3	At3g52480	824413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.5	99.5	39.3	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
18.5	99.5	31.1	At2g42900	818891	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
18.4	99.5	63.3	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
18.3	99.5	73.0	At1g76240	843957	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
18.3	99.5	35.5	At4g36380	829790	ROT3 (ROTUNDIFOLIA 3)	Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).	O.I.	C.G.	H.G.
18.2	99.5	76.9	At2g40110	818600	yippee family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
18.0	99.5	36.8	At4g03070	828100	AOP1	Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.	O.I.	C.G.	H.G.
17.9	99.5	163.1	At1g57980	842165	purine permease-related	F:purine transmembrane transporter activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
17.6	99.5	83.4	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
17.6	99.5	74.8	At1g55265	841971	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;PBO	O.I.	C.G.	H.G.

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GSM ID	GSM131183
Assay name	AtGen_D-15_1-US_REP1_ATH1
GSE experiment	GSE5617: AtGenExpress: Light treatments

Microarray experiments to specifically-expressed genes

GSM ID GSM131183 Assay name AtGen_D-15_1-US_REP1_ATH1 GSE experiment GSE5617: AtGenExpress: Light treatments

GSM ID GSM131183

Assay name AtGen_D-15_1-US_REP1_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments