CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131177

Assay name AtGen_D-9_1-DS_REP1_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
100.5 99.9 132.9 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
89.9 99.9 33.3 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
83.7 99.9 179.5 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO O.I. C.G. H.G.
82.2 99.9 56.7 At4g16670 827369 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO O.I. C.G. H.G.
79.8 99.9 360.4 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
60.4 99.8 49.8 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). O.I. C.G. H.G.
53.8 99.8 23.9 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
53.3 99.8 80.7 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
52.0 99.8 193.7 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). O.I. C.G. H.G.
52.0 99.8 60.1 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.6 99.8 360.3 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
49.4 99.8 149.9 At4g01950 827165 GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3) Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. O.I. C.G. H.G.
48.0 99.8 26.4 At5g67020 836837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
47.1 99.8 322.2 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. C.G. H.G.
46.9 99.8 45.0 At3g52480 824413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.5 99.8 277.7 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
44.5 99.8 133.3 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
43.8 99.8 47.8 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
41.7 99.8 112.4 At1g65310 842839 XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. O.I. C.G. H.G.
41.0 99.8 137.7 At5g15290 831381 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.9 99.8 46.6 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO O.I. C.G. H.G.
39.6 99.8 79.8 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.
39.0 99.8 65.9 At2g43060 818908 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
38.2 99.8 253.6 At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) O.I. C.G. H.G.
38.1 99.8 110.7 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P O.I. C.G. H.G.
37.7 99.7 75.4 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
37.5 99.7 235.9 At3g52060 824369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
37.2 99.7 312.0 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). O.I. C.G. H.G.
36.2 99.7 65.6 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
35.6 99.7 165.5 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 O.I. C.G. H.G.
35.4 99.7 178.0 At4g18970 827632 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
35.2 99.7 273.8 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
33.9 99.7 23.8 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
33.6 99.7 392.0 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
33.6 99.7 19.5 At4g23030 828402 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
32.8 99.7 168.9 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
32.7 99.7 11.0 At3g03830 821123 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
32.7 99.7 9.6 At3g59440 825113 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV O.I. C.G. H.G.
32.6 99.7 75.3 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
32.3 99.7 210.4 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
32.0 99.7 114.1 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
29.9 99.7 81.9 At2g28110 817357 FRA8 (FRAGILE FIBER 8) Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. O.I. C.G. H.G.
29.6 99.7 245.1 At5g64570 836578 XYL4 Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. O.I. C.G. H.G.
27.9 99.7 54.7 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
27.3 99.7 74.6 At3g49360 824098 glucosamine/galactosamine-6-phosphate isomerase family protein F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP O.I. C.G. H.G.
27.1 99.7 70.0 At4g33750 - - O.I. C.G. H.G.
27.0 99.7 15.7 At2g02820 814812 MYB88 (myb domain protein 88) Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. O.I. C.G. H.G.
26.6 99.7 59.2 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
26.5 99.7 76.0 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
26.4 99.7 13.4 At3g53200 824486 AtMYB27 (myb domain protein 27) Member of the R2R3 factor gene family. O.I. C.G. H.G.
26.3 99.7 92.3 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
26.2 99.7 52.0 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
25.9 99.7 145.6 At2g44130 819019 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV O.I. C.G. H.G.
25.9 99.7 8.6 At5g65800 836709 ACS5 (ACC SYNTHASE 5) 1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition. O.I. C.G. H.G.
25.8 99.7 115.2 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
25.8 99.7 25.0 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
25.6 99.7 261.2 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA O.I. C.G. H.G.
25.0 99.6 34.9 At1g52830 841717 IAA6 (INDOLE-3-ACETIC ACID 6) An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid. O.I. C.G. H.G.
24.7 99.6 397.5 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
24.6 99.6 234.0 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
24.4 99.6 20.8 At1g06980 837208 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.0 99.6 97.3 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
23.9 99.6 83.4 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO O.I. C.G. H.G.
23.8 99.6 43.9 At4g32070 829338 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:vacuole;MOPFBAV O.I. C.G. H.G.
23.7 99.6 44.5 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
23.6 99.6 226.8 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. O.I. C.G. H.G.
23.2 99.6 74.5 At1g62770 842576 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.1 99.6 75.8 At5g04530 830332 KCS19 (3-KETOACYL-COA SYNTHASE 19) Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
23.0 99.6 173.6 At3g13720 820581 PRA8 F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF O.I. C.G. H.G.
23.0 99.6 36.9 At4g11610 826766 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
22.9 99.6 35.4 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF O.I. C.G. H.G.
22.8 99.6 59.5 At3g11600 820333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.5 99.6 81.5 At5g66590 836791 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO O.I. C.G. H.G.
22.5 99.6 75.8 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
22.4 99.6 138.6 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
22.3 99.6 72.1 At3g49790 824141 ATP binding F:ATP binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.0 99.6 112.5 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.
21.9 99.6 15.4 At3g48940 824055 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFA O.I. C.G. H.G.
21.7 99.6 36.4 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
21.5 99.6 38.4 At4g36380 829790 ROT3 (ROTUNDIFOLIA 3) Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). O.I. C.G. H.G.
21.4 99.6 55.4 At1g29510 839828 SAUR68 (SMALL AUXIN UPREGULATED 68) F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
21.1 99.6 21.7 At5g66080 836740 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
20.8 99.6 167.9 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
20.7 99.6 282.4 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
20.7 99.6 51.2 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
20.3 99.6 131.1 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
20.3 99.6 76.7 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
19.6 99.6 240.4 At3g12610 820441 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. O.I. C.G. H.G.
19.4 99.6 236.9 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
19.3 99.6 171.0 At1g25230 839105 purple acid phosphatase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
19.2 99.6 235.3 At1g68530 843182 KCS6 (3-KETOACYL-COA SYNTHASE 6) Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
18.9 99.5 23.4 At2g20950 816629 - F:unknown;P:unknown;C:unknown;MPFOBAV O.I. C.G. H.G.
18.8 99.5 160.0 At3g10740 820243 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification. O.I. C.G. H.G.
18.8 99.5 111.9 At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
18.8 99.5 50.4 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
18.8 99.5 35.0 At4g13790 827013 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;PO O.I. C.G. H.G.
18.8 99.5 29.3 At5g15830 831440 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
18.6 99.5 24.6 At5g02170 831896 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV O.I. C.G. H.G.
18.6 99.5 6.4 At3g48370 3769684 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.5 99.5 189.3 At1g04250 839568 AXR3 (AUXIN RESISTANT 3) Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
100.5	99.9	132.9	At5g53980	835481	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
89.9	99.9	33.3	At2g19660	816485	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
83.7	99.9	179.5	At3g48970	824058	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO	O.I.	C.G.	H.G.
82.2	99.9	56.7	At4g16670	827369	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
79.8	99.9	360.4	At2g43050	818907	ATPMEPCRD	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
60.4	99.8	49.8	At4g01680	826853	MYB55 (myb domain protein 55)	Encodes a putative transcription factor (MYB55).	O.I.	C.G.	H.G.
53.8	99.8	23.9	At1g27670	839659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.3	99.8	80.7	At5g37790	833757	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
52.0	99.8	193.7	At2g34500	818013	CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).	O.I.	C.G.	H.G.
52.0	99.8	60.1	At4g23870	828486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.6	99.8	360.3	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
49.4	99.8	149.9	At4g01950	827165	GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3)	Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.	O.I.	C.G.	H.G.
48.0	99.8	26.4	At5g67020	836837	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
47.1	99.8	322.2	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	C.G.	H.G.
46.9	99.8	45.0	At3g52480	824413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.5	99.8	277.7	At5g60660	836187	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
44.5	99.8	133.3	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
43.8	99.8	47.8	At3g14370	820658	WAG2	The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
41.7	99.8	112.4	At1g65310	842839	XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)	putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.	O.I.	C.G.	H.G.
41.0	99.8	137.7	At5g15290	831381	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.9	99.8	46.6	At4g35720	829724	unknown protein	F:unknown;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
39.6	99.8	79.8	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.
39.0	99.8	65.9	At2g43060	818908	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
38.2	99.8	253.6	At1g32170	840109	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	xyloglucan endotransglycosylase-related protein (XTR4)	O.I.	C.G.	H.G.
38.1	99.8	110.7	At4g25260	828629	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P	O.I.	C.G.	H.G.
37.7	99.7	75.4	At4g14465	827093	DNA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
37.5	99.7	235.9	At3g52060	824369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
37.2	99.7	312.0	At5g10430	830907	AGP4 (ARABINOGALACTAN PROTEIN 4)	Encodes arabinogalactan-protein (AGP4).	O.I.	C.G.	H.G.
36.2	99.7	65.6	At5g18060	831310	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
35.6	99.7	165.5	At3g15540	820793	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	IAA induced protein 19	O.I.	C.G.	H.G.
35.4	99.7	178.0	At4g18970	827632	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
35.2	99.7	273.8	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
33.9	99.7	23.8	At4g14380	827082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
33.6	99.7	392.0	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
33.6	99.7	19.5	At4g23030	828402	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
32.8	99.7	168.9	At4g37220	829876	stress-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.7	99.7	11.0	At3g03830	821123	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
32.7	99.7	9.6	At3g59440	825113	calcium-binding protein, putative	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV	O.I.	C.G.	H.G.
32.6	99.7	75.3	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
32.3	99.7	210.4	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
32.0	99.7	114.1	At4g16515	827350	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.9	99.7	81.9	At2g28110	817357	FRA8 (FRAGILE FIBER 8)	Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.	O.I.	C.G.	H.G.
29.6	99.7	245.1	At5g64570	836578	XYL4	Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	O.I.	C.G.	H.G.
27.9	99.7	54.7	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
27.3	99.7	74.6	At3g49360	824098	glucosamine/galactosamine-6-phosphate isomerase family protein	F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP	O.I.	C.G.	H.G.
27.1	99.7	70.0	At4g33750		-	-	O.I.	C.G.	H.G.
27.0	99.7	15.7	At2g02820	814812	MYB88 (myb domain protein 88)	Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.	O.I.	C.G.	H.G.
26.6	99.7	59.2	At5g63650	836485	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
26.5	99.7	76.0	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
26.4	99.7	13.4	At3g53200	824486	AtMYB27 (myb domain protein 27)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
26.3	99.7	92.3	At2g40110	818600	yippee family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
26.2	99.7	52.0	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
25.9	99.7	145.6	At2g44130	819019	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAV	O.I.	C.G.	H.G.
25.9	99.7	8.6	At5g65800	836709	ACS5 (ACC SYNTHASE 5)	1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition.	O.I.	C.G.	H.G.
25.8	99.7	115.2	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
25.8	99.7	25.0	At1g29450	839821	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
25.6	99.7	261.2	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	O.I.	C.G.	H.G.
25.0	99.6	34.9	At1g52830	841717	IAA6 (INDOLE-3-ACETIC ACID 6)	An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.	O.I.	C.G.	H.G.
24.7	99.6	397.5	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
24.6	99.6	234.0	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
24.4	99.6	20.8	At1g06980	837208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.0	99.6	97.3	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
23.9	99.6	83.4	At1g76240	843957	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
23.8	99.6	43.9	At4g32070	829338	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:vacuole;MOPFBAV	O.I.	C.G.	H.G.
23.7	99.6	44.5	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
23.6	99.6	226.8	At1g01120	839395	KCS1 (3-KETOACYL-COA SYNTHASE 1)	Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.	O.I.	C.G.	H.G.
23.2	99.6	74.5	At1g62770	842576	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.1	99.6	75.8	At5g04530	830332	KCS19 (3-KETOACYL-COA SYNTHASE 19)	Encodes KCS19, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
23.0	99.6	173.6	At3g13720	820581	PRA8	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF	O.I.	C.G.	H.G.
23.0	99.6	36.9	At4g11610	826766	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
22.9	99.6	35.4	At2g34020	817963	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF	O.I.	C.G.	H.G.
22.8	99.6	59.5	At3g11600	820333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.5	99.6	81.5	At5g66590	836791	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO	O.I.	C.G.	H.G.
22.5	99.6	75.8	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
22.4	99.6	138.6	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
22.3	99.6	72.1	At3g49790	824141	ATP binding	F:ATP binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.0	99.6	112.5	At3g28290	822455	AT14A	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	O.I.	C.G.	H.G.
21.9	99.6	15.4	At3g48940	824055	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFA	O.I.	C.G.	H.G.
21.7	99.6	36.4	At5g57240	835830	ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
21.5	99.6	38.4	At4g36380	829790	ROT3 (ROTUNDIFOLIA 3)	Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates).	O.I.	C.G.	H.G.
21.4	99.6	55.4	At1g29510	839828	SAUR68 (SMALL AUXIN UPREGULATED 68)	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
21.1	99.6	21.7	At5g66080	836740	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
20.8	99.6	167.9	At2g40610	818656	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
20.7	99.6	282.4	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
20.7	99.6	51.2	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
20.3	99.6	131.1	At5g43760	834398	KCS20 (3-KETOACYL-COA SYNTHASE 20)	Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
20.3	99.6	76.7	At1g07720	837286	KCS3 (3-KETOACYL-COA SYNTHASE 3)	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
19.6	99.6	240.4	At3g12610	820441	DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)	Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.	O.I.	C.G.	H.G.
19.4	99.6	236.9	At2g39310	818516	JAL22 (JACALIN-RELATED LECTIN 22)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
19.3	99.6	171.0	At1g25230	839105	purple acid phosphatase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
19.2	99.6	235.3	At1g68530	843182	KCS6 (3-KETOACYL-COA SYNTHASE 6)	Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
18.9	99.5	23.4	At2g20950	816629	-	F:unknown;P:unknown;C:unknown;MPFOBAV	O.I.	C.G.	H.G.
18.8	99.5	160.0	At3g10740	820243	ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)	Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.	O.I.	C.G.	H.G.
18.8	99.5	111.9	At2g37640	818341	EXP3	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
18.8	99.5	50.4	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
18.8	99.5	35.0	At4g13790	827013	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;PO	O.I.	C.G.	H.G.
18.8	99.5	29.3	At5g15830	831440	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
18.6	99.5	24.6	At5g02170	831896	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV	O.I.	C.G.	H.G.
18.6	99.5	6.4	At3g48370	3769684	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.5	99.5	189.3	At1g04250	839568	AXR3 (AUXIN RESISTANT 3)	Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	O.I.	C.G.	H.G.

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GSM ID	GSM131177
Assay name	AtGen_D-9_1-DS_REP1_ATH1
GSE experiment	GSE5617: AtGenExpress: Light treatments

Microarray experiments to specifically-expressed genes

GSM ID GSM131177 Assay name AtGen_D-9_1-DS_REP1_ATH1 GSE experiment GSE5617: AtGenExpress: Light treatments

GSM ID GSM131177

Assay name AtGen_D-9_1-DS_REP1_ATH1

GSE experiment GSE5617: AtGenExpress: Light treatments