CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131164

Assay name AtGen_C-14_2-Pi-12_REP2_ATH1

GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
102.8 99.9 71.5 At1g06160 837125 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
91.6 99.9 133.4 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 O.I. C.G. H.G.
85.1 99.9 252.5 At3g23550 821934 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
81.1 99.9 126.1 At4g24350 828538 phosphorylase family protein F:catalytic activity, nutrient reservoir activity;P:response to wounding;C:plant-type cell wall;BPOAF O.I. C.G. H.G.
77.1 99.9 199.5 At5g61160 836237 AACT1 (anthocyanin 5-aromatic acyltransferase 1) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
72.4 99.9 474.9 At5g44420 834469 PDF1.2 Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
65.3 99.8 22.3 At5g40990 834101 GLIP1 (GDSL LIPASE1) Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway. O.I. C.G. H.G.
49.9 99.8 60.4 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
45.3 99.8 214.4 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. C.G. H.G.
45.1 99.8 313.3 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). O.I. C.G. H.G.
44.4 99.8 381.2 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
41.2 99.8 118.9 At2g41180 818717 sigA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
31.6 99.7 130.1 At3g14620 820690 CYP72A8 putative cytochrome P450 O.I. C.G. H.G.
31.3 99.7 439.3 At3g16530 820901 legume lectin family protein Lectin like protein whose expression is induced upon treatment with chitin oligomers. O.I. C.G. H.G.
31.0 99.7 231.6 At5g17990 831666 TRP1 (tryptophan biosynthesis 1) Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate. O.I. C.G. H.G.
30.8 99.7 138.1 At3g49620 824124 DIN11 (DARK INDUCIBLE 11) encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
27.0 99.7 73.8 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. C.G. H.G.
26.5 99.7 81.8 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
24.8 99.6 41.1 At3g26200 822221 CYP71B22 putative cytochrome P450 O.I. C.G. H.G.
21.9 99.6 82.4 At5g52450 835321 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM O.I. C.G. H.G.
20.9 99.6 202.5 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP O.I. C.G. H.G.
20.5 99.6 90.5 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. O.I. C.G. H.G.
19.6 99.6 35.7 At2g36970 818271 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
19.3 99.6 255.4 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
18.6 99.5 40.0 At4g03450 827913 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
17.8 99.5 80.9 At2g30770 817628 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13) putative cytochrome P450 O.I. C.G. H.G.
17.4 99.5 130.0 At1g24807 839085 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
17.2 99.5 20.3 At3g26820 822297 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMF O.I. C.G. H.G.
15.6 99.5 181.2 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
14.6 99.4 114.5 At1g17745 838352 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) encodes a 3-Phosphoglycerate dehydrogenase O.I. C.G. H.G.
14.2 99.4 148.4 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
14.0 99.4 20.7 At2g15080 815997 AtRLP19 (Receptor Like Protein 19) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
13.8 99.4 159.2 At5g54960 835587 PDC2 (pyruvate decarboxylase-2) pyruvate decarboxylase-2 O.I. C.G. H.G.
13.5 99.4 59.2 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
13.4 99.4 69.1 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
13.2 99.4 131.3 At5g27380 832797 GSH2 (GLUTATHIONE SYNTHETASE 2) Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abundant and the protein is localized to the chloroplast. The smaller transcript, in which the transit peptide is truncated, is localized to the cytosol. O.I. C.G. H.G.
13.2 99.4 32.5 At2g23680 816899 stress-responsive protein, putative F:molecular_function unknown;P:response to stress;C:membrane;P O.I. C.G. H.G.
13.0 99.4 15.5 At1g07260 837237 UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
12.6 99.3 359.1 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. O.I. C.G. H.G.
12.6 99.3 128.4 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
12.6 99.3 62.3 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
12.5 99.3 118.4 At2g24180 816952 CYP71B6 (CYTOCHROME P450 71B6) cytochrome P450 monooxygenase O.I. C.G. H.G.
12.3 99.3 80.6 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
12.3 99.3 36.1 At1g19250 838508 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. O.I. C.G. H.G.
12.2 99.3 54.3 At4g36220 829779 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. O.I. C.G. H.G.
12.2 99.3 45.9 At1g64710 842779 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
12.1 99.3 191.7 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
12.0 99.3 70.2 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. O.I. C.G. H.G.
11.9 99.3 77.0 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
11.9 99.3 55.2 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. O.I. C.G. H.G.
11.6 99.3 97.0 At3g23570 821936 dienelactone hydrolase family protein F:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMA O.I. C.G. H.G.
11.5 99.3 248.4 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively O.I. C.G. H.G.
11.5 99.3 75.5 At3g04210 819576 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO O.I. C.G. H.G.
11.5 99.3 29.7 At4g03410 827932 peroxisomal membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPO O.I. C.G. H.G.
11.4 99.3 25.5 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
11.3 99.3 243.3 At3g28940 822530 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative F:molecular_function unknown;P:response to bacterium;C:plasma membrane, chloroplast;PFOBA O.I. C.G. H.G.
11.3 99.3 59.0 At1g23090 838917 AST91 (SULFATE TRANSPORTER 91) Encodes AST91 mRNA for sulfate transporter. O.I. C.G. H.G.
11.1 99.2 171.2 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. O.I. C.G. H.G.
11.1 99.2 133.1 At5g05730 830457 ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1) ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots. O.I. C.G. H.G.
11.1 99.2 126.8 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. O.I. C.G. H.G.
11.1 99.2 13.5 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase O.I. C.G. H.G.
11.0 99.2 54.0 At3g63380 825513 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV O.I. C.G. H.G.
11.0 99.2 42.5 At2g28210 817367 ATACA2 (ALPHA CARBONIC ANHYDRASE 2) F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV O.I. C.G. H.G.
10.8 99.2 88.2 At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, O.I. C.G. H.G.
10.8 99.2 66.0 At4g33540 829493 metallo-beta-lactamase family protein F:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMF O.I. C.G. H.G.
10.8 99.2 53.5 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. O.I. C.G. H.G.
10.8 99.2 40.6 At1g10700 837613 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV O.I. C.G. H.G.
10.5 99.2 126.0 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
10.5 99.2 98.0 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM O.I. C.G. H.G.
10.5 99.2 34.4 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
10.4 99.2 233.6 At4g27070 828815 TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) Tryptophan synthase beta. Expressed at low levels in all tissues. O.I. C.G. H.G.
10.4 99.2 57.7 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. C.G. H.G.
10.4 99.2 53.7 At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. O.I. C.G. H.G.
10.0 99.2 71.3 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.8 99.1 40.9 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB O.I. C.G. H.G.
9.6 99.1 16.4 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
9.4 99.1 25.0 At3g09010 820053 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
9.3 99.1 40.9 At5g01500 831861 mitochondrial substrate carrier family protein encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover O.I. C.G. H.G.
9.1 99.1 202.0 At4g35630 829715 PSAT Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. O.I. C.G. H.G.
9.1 99.1 127.5 At5g17380 831604 pyruvate decarboxylase family protein F:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMV O.I. C.G. H.G.
9.0 99.1 12.8 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO O.I. C.G. H.G.
8.8 99.0 39.4 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
8.8 99.0 11.3 At2g31230 817680 ATERF15 (Ethylene-responsive element binding factor 15) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
8.7 99.0 76.4 At5g04930 830375 ALA1 (aminophospholipid ATPase1) Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response. O.I. C.G. H.G.
8.6 99.0 31.3 At2g29990 817549 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
102.8	99.9	71.5	At1g06160	837125	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
91.6	99.9	133.4	At3g28930	822529	AIG2 (AVRRPT2-INDUCED GENE 2)	avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	O.I.	C.G.	H.G.
85.1	99.9	252.5	At3g23550	821934	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
81.1	99.9	126.1	At4g24350	828538	phosphorylase family protein	F:catalytic activity, nutrient reservoir activity;P:response to wounding;C:plant-type cell wall;BPOAF	O.I.	C.G.	H.G.
77.1	99.9	199.5	At5g61160	836237	AACT1 (anthocyanin 5-aromatic acyltransferase 1)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
72.4	99.9	474.9	At5g44420	834469	PDF1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
65.3	99.8	22.3	At5g40990	834101	GLIP1 (GDSL LIPASE1)	Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.	O.I.	C.G.	H.G.
49.9	99.8	60.4	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
45.3	99.8	214.4	At3g26830	822298	PAD3 (PHYTOALEXIN DEFICIENT 3)	Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.	O.I.	C.G.	H.G.
45.1	99.8	313.3	At3g54640	824629	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).	O.I.	C.G.	H.G.
44.4	99.8	381.2	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
41.2	99.8	118.9	At2g41180	818717	sigA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
31.6	99.7	130.1	At3g14620	820690	CYP72A8	putative cytochrome P450	O.I.	C.G.	H.G.
31.3	99.7	439.3	At3g16530	820901	legume lectin family protein	Lectin like protein whose expression is induced upon treatment with chitin oligomers.	O.I.	C.G.	H.G.
31.0	99.7	231.6	At5g17990	831666	TRP1 (tryptophan biosynthesis 1)	Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.	O.I.	C.G.	H.G.
30.8	99.7	138.1	At3g49620	824124	DIN11 (DARK INDUCIBLE 11)	encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
27.0	99.7	73.8	At5g38900	833882	DSBA oxidoreductase family protein	F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA	O.I.	C.G.	H.G.
26.5	99.7	81.8	At2g29460	817495	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
24.8	99.6	41.1	At3g26200	822221	CYP71B22	putative cytochrome P450	O.I.	C.G.	H.G.
21.9	99.6	82.4	At5g52450	835321	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM	O.I.	C.G.	H.G.
20.9	99.6	202.5	At2g04400	814980	indole-3-glycerol phosphate synthase (IGPS)	F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP	O.I.	C.G.	H.G.
20.5	99.6	90.5	At1g67810	843107	SUFE2 (SULFUR E 2)	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.	O.I.	C.G.	H.G.
19.6	99.6	35.7	At2g36970	818271	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
19.3	99.6	255.4	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
18.6	99.5	40.0	At4g03450	827913	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
17.8	99.5	80.9	At2g30770	817628	CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)	putative cytochrome P450	O.I.	C.G.	H.G.
17.4	99.5	130.0	At1g24807	839085	anthranilate synthase beta subunit, putative	F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
17.2	99.5	20.3	At3g26820	822297	esterase/lipase/thioesterase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMF	O.I.	C.G.	H.G.
15.6	99.5	181.2	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
14.6	99.4	114.5	At1g17745	838352	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE)	encodes a 3-Phosphoglycerate dehydrogenase	O.I.	C.G.	H.G.
14.2	99.4	148.4	At4g39950	830154	CYP79B2	Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
14.0	99.4	20.7	At2g15080	815997	AtRLP19 (Receptor Like Protein 19)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
13.8	99.4	159.2	At5g54960	835587	PDC2 (pyruvate decarboxylase-2)	pyruvate decarboxylase-2	O.I.	C.G.	H.G.
13.5	99.4	59.2	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
13.4	99.4	69.1	At1g26380	839180	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
13.2	99.4	131.3	At5g27380	832797	GSH2 (GLUTATHIONE SYNTHETASE 2)	Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abundant and the protein is localized to the chloroplast. The smaller transcript, in which the transit peptide is truncated, is localized to the cytosol.	O.I.	C.G.	H.G.
13.2	99.4	32.5	At2g23680	816899	stress-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:membrane;P	O.I.	C.G.	H.G.
13.0	99.4	15.5	At1g07260	837237	UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
12.6	99.3	359.1	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	O.I.	C.G.	H.G.
12.6	99.3	128.4	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
12.6	99.3	62.3	At1g72900	843621	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
12.5	99.3	118.4	At2g24180	816952	CYP71B6 (CYTOCHROME P450 71B6)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
12.3	99.3	80.6	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
12.3	99.3	36.1	At1g19250	838508	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	FMO1 is required for full expression of TIR-NB-LRR�conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.	O.I.	C.G.	H.G.
12.2	99.3	54.3	At4g36220	829779	FAH1 (FERULIC ACID 5-HYDROXYLASE 1)	encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.	O.I.	C.G.	H.G.
12.2	99.3	45.9	At1g64710	842779	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
12.1	99.3	191.7	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
12.0	99.3	70.2	At1g15520	838122	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.	O.I.	C.G.	H.G.
11.9	99.3	77.0	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
11.9	99.3	55.2	At2g04160	814953	AIR3	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.	O.I.	C.G.	H.G.
11.6	99.3	97.0	At3g23570	821936	dienelactone hydrolase family protein	F:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMA	O.I.	C.G.	H.G.
11.5	99.3	248.4	At3g24503	822042	ALDH2C4	Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively	O.I.	C.G.	H.G.
11.5	99.3	75.5	At3g04210	819576	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMO	O.I.	C.G.	H.G.
11.5	99.3	29.7	At4g03410	827932	peroxisomal membrane protein-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPO	O.I.	C.G.	H.G.
11.4	99.3	25.5	At1g26420	839184	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
11.3	99.3	243.3	At3g28940	822530	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	F:molecular_function unknown;P:response to bacterium;C:plasma membrane, chloroplast;PFOBA	O.I.	C.G.	H.G.
11.3	99.3	59.0	At1g23090	838917	AST91 (SULFATE TRANSPORTER 91)	Encodes AST91 mRNA for sulfate transporter.	O.I.	C.G.	H.G.
11.1	99.2	171.2	At1g21250	838721	WAK1 (CELL WALL-ASSOCIATED KINASE)	cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.	O.I.	C.G.	H.G.
11.1	99.2	133.1	At5g05730	830457	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.	O.I.	C.G.	H.G.
11.1	99.2	126.8	At2g38860	818470	YLS5	Encodes protease I (pfpI)-like protein YLS5.	O.I.	C.G.	H.G.
11.1	99.2	13.5	At1g21240	838719	WAK3 (wall associated kinase 3)	encodes a wall-associated kinase	O.I.	C.G.	H.G.
11.0	99.2	54.0	At3g63380	825513	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	O.I.	C.G.	H.G.
11.0	99.2	42.5	At2g28210	817367	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV	O.I.	C.G.	H.G.
10.8	99.2	88.2	At3g48890	824050	ATMP2	putative progesterone-binding protein homolog (Atmp2) mRNA,	O.I.	C.G.	H.G.
10.8	99.2	66.0	At4g33540	829493	metallo-beta-lactamase family protein	F:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMF	O.I.	C.G.	H.G.
10.8	99.2	53.5	At2g35980	818171	YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.	O.I.	C.G.	H.G.
10.8	99.2	40.6	At1g10700	837613	ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)	F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV	O.I.	C.G.	H.G.
10.5	99.2	126.0	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
10.5	99.2	98.0	At4g37520	829907	peroxidase 50 (PER50) (P50) (PRXR2)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM	O.I.	C.G.	H.G.
10.5	99.2	34.4	At1g69730	843309	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
10.4	99.2	233.6	At4g27070	828815	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	Tryptophan synthase beta. Expressed at low levels in all tissues.	O.I.	C.G.	H.G.
10.4	99.2	57.7	At2g46430	819251	ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)	cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	O.I.	C.G.	H.G.
10.4	99.2	53.7	At5g22300	832290	NIT4 (NITRILASE 4)	encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.	O.I.	C.G.	H.G.
10.0	99.2	71.3	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.8	99.1	40.9	At3g50770	824241	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
9.6	99.1	16.4	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
9.4	99.1	25.0	At3g09010	820053	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
9.3	99.1	40.9	At5g01500	831861	mitochondrial substrate carrier family protein	encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover	O.I.	C.G.	H.G.
9.1	99.1	202.0	At4g35630	829715	PSAT	Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway.	O.I.	C.G.	H.G.
9.1	99.1	127.5	At5g17380	831604	pyruvate decarboxylase family protein	F:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMV	O.I.	C.G.	H.G.
9.0	99.1	12.8	At2g16380	816135	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:intracellular;MPFO	O.I.	C.G.	H.G.
8.8	99.0	39.4	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
8.8	99.0	11.3	At2g31230	817680	ATERF15 (Ethylene-responsive element binding factor 15)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
8.7	99.0	76.4	At5g04930	830375	ALA1 (aminophospholipid ATPase1)	Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.	O.I.	C.G.	H.G.
8.6	99.0	31.3	At2g29990	817549	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)	F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM	O.I.	C.G.	H.G.

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GSM ID	GSM131164
Assay name	AtGen_C-14_2-Pi-12_REP2_ATH1
GSE experiment	GSE5616: AtGenExpress: Response to Phytophthora infestans

Microarray experiments to specifically-expressed genes

GSM ID GSM131164 Assay name AtGen_C-14_2-Pi-12_REP2_ATH1 GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans

GSM ID GSM131164

Assay name AtGen_C-14_2-Pi-12_REP2_ATH1

GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans