CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131159

Assay name AtGen_C-9_3-C-24_REP3_ATH1

GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
205.3 100.0 109.7 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
93.4 99.9 42.6 At3g15310 820762 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.2 99.8 206.8 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
41.2 99.8 96.5 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
37.0 99.7 69.3 At2g21650 816703 MEE3 (MATERNAL EFFECT EMBRYO ARREST 3) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMO O.I. C.G. H.G.
32.7 99.7 52.1 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
23.1 99.6 265.7 At1g62180 842514 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. O.I. C.G. H.G.
20.1 99.6 122.6 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
17.4 99.5 96.0 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
17.3 99.5 29.7 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.8 99.5 69.7 At1g23090 838917 AST91 (SULFATE TRANSPORTER 91) Encodes AST91 mRNA for sulfate transporter. O.I. C.G. H.G.
14.8 99.4 49.8 At5g54130 835500 - - O.I. C.G. H.G.
14.6 99.4 92.9 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
14.6 99.4 30.6 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
13.7 99.4 29.8 At2g36970 818271 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
13.0 99.4 235.0 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
13.0 99.4 44.7 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
13.0 99.4 22.3 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
12.8 99.3 269.2 At2g15620 816055 NIR1 (NITRITE REDUCTASE 1) involved in the second step of nitrate assimilation O.I. C.G. H.G.
12.4 99.3 123.6 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
12.0 99.3 260.2 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
12.0 99.3 219.9 At2g42600 818860 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. C.G. H.G.
11.7 99.3 239.4 At1g48600 841281 phosphoethanolamine N-methyltransferase 2, putative (NMT2) F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
11.6 99.3 40.2 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
11.1 99.2 24.9 At2g19650 816484 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:unknown;POM O.I. C.G. H.G.
10.6 99.2 72.6 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.6 99.2 62.9 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
10.4 99.2 110.5 At4g38840 830039 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO O.I. C.G. H.G.
10.2 99.2 87.6 At2g21210 816658 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. O.I. C.G. H.G.
10.1 99.2 27.4 At5g51460 835220 ATTPPA homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases O.I. C.G. H.G.
10.0 99.2 50.6 At5g03555 831791 permease, cytosine/purines, uracil, thiamine, allantoin family protein F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM O.I. C.G. H.G.
9.7 99.1 135.4 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
9.6 99.1 197.2 At1g69530 843288 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
9.6 99.1 191.2 At1g52870 841720 peroxisomal membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MPFO O.I. C.G. H.G.
9.5 99.1 147.8 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
9.5 99.1 13.2 At2g16380 816135 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:intracellular;MPFO O.I. C.G. H.G.
9.2 99.1 29.9 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
9.1 99.1 104.8 At1g64860 842794 SIGA (SIGMA FACTOR A) Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme O.I. C.G. H.G.
9.0 99.1 70.9 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
9.0 99.1 29.0 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. C.G. H.G.
8.9 99.0 71.9 At1g74880 843827 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
8.9 99.0 27.2 At1g15410 838111 aspartate-glutamate racemase family F:racemase and epimerase activity, acting on amino acids and derivatives;P:amino acid metabolic process, metabolic process;C:chloroplast;BOAPF O.I. C.G. H.G.
8.9 99.0 21.6 At5g09820 830842 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
8.6 99.0 25.4 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
205.3	100.0	109.7	At1g49200	841343	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
93.4	99.9	42.6	At3g15310	820762	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.2	99.8	206.8	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
41.2	99.8	96.5	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
37.0	99.7	69.3	At2g21650	816703	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMO	O.I.	C.G.	H.G.
32.7	99.7	52.1	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
23.1	99.6	265.7	At1g62180	842514	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	O.I.	C.G.	H.G.
20.1	99.6	122.6	At5g06530	830541	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
17.4	99.5	96.0	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
17.3	99.5	29.7	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.8	99.5	69.7	At1g23090	838917	AST91 (SULFATE TRANSPORTER 91)	Encodes AST91 mRNA for sulfate transporter.	O.I.	C.G.	H.G.
14.8	99.4	49.8	At5g54130	835500	-	-	O.I.	C.G.	H.G.
14.6	99.4	92.9	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
14.6	99.4	30.6	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
13.7	99.4	29.8	At2g36970	818271	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
13.0	99.4	235.0	At1g73600	843694	methyltransferase/ phosphoethanolamine N-methyltransferase	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
13.0	99.4	44.7	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
13.0	99.4	22.3	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
12.8	99.3	269.2	At2g15620	816055	NIR1 (NITRITE REDUCTASE 1)	involved in the second step of nitrate assimilation	O.I.	C.G.	H.G.
12.4	99.3	123.6	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
12.0	99.3	260.2	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
12.0	99.3	219.9	At2g42600	818860	ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	C.G.	H.G.
11.7	99.3	239.4	At1g48600	841281	phosphoethanolamine N-methyltransferase 2, putative (NMT2)	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
11.6	99.3	40.2	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
11.1	99.2	24.9	At2g19650	816484	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:unknown;POM	O.I.	C.G.	H.G.
10.6	99.2	72.6	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.6	99.2	62.9	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
10.4	99.2	110.5	At4g38840	830039	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO	O.I.	C.G.	H.G.
10.2	99.2	87.6	At2g21210	816658	auxin-responsive protein, putative	Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	O.I.	C.G.	H.G.
10.1	99.2	27.4	At5g51460	835220	ATTPPA	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	O.I.	C.G.	H.G.
10.0	99.2	50.6	At5g03555	831791	permease, cytosine/purines, uracil, thiamine, allantoin family protein	F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
9.7	99.1	135.4	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
9.6	99.1	197.2	At1g69530	843288	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
9.6	99.1	191.2	At1g52870	841720	peroxisomal membrane protein-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MPFO	O.I.	C.G.	H.G.
9.5	99.1	147.8	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	13.2	At2g16380	816135	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:intracellular;MPFO	O.I.	C.G.	H.G.
9.2	99.1	29.9	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
9.1	99.1	104.8	At1g64860	842794	SIGA (SIGMA FACTOR A)	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	O.I.	C.G.	H.G.
9.0	99.1	70.9	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
9.0	99.1	29.0	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	C.G.	H.G.
8.9	99.0	71.9	At1g74880	843827	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
8.9	99.0	27.2	At1g15410	838111	aspartate-glutamate racemase family	F:racemase and epimerase activity, acting on amino acids and derivatives;P:amino acid metabolic process, metabolic process;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
8.9	99.0	21.6	At5g09820	830842	plastid-lipid associated protein PAP / fibrillin family protein	F:structural molecule activity;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
8.6	99.0	25.4	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.

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GSM ID	GSM131159
Assay name	AtGen_C-9_3-C-24_REP3_ATH1
GSE experiment	GSE5616: AtGenExpress: Response to Phytophthora infestans

Microarray experiments to specifically-expressed genes

GSM ID GSM131159 Assay name AtGen_C-9_3-C-24_REP3_ATH1 GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans

GSM ID GSM131159

Assay name AtGen_C-9_3-C-24_REP3_ATH1

GSE experiment GSE5616: AtGenExpress: Response to Phytophthora infestans