Microarray experiments to specifically-expressed genes

GSM ID GSM131137
Assay name AtGen_B-23_2-2-4_REP2_ATH1
GSE experiment GSE5615: AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
106.199.9125.8At5g47330834780palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFOO.I.C.G.H.G.
31.199.782.6At2g16630816164proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
23.299.6115.9At5g07010830592ST2A (SULFOTRANSFERASE 2A)Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).O.I.C.G.H.G.
23.099.641.7At2g39710818555aspartyl protease family proteinEncodes a Cysteine-rich peptide (CRP) family proteinO.I.C.G.H.G.
22.299.631.1At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
21.899.678.7At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
16.599.513.3At4g16880827396disease resistance protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMO.I.C.G.H.G.
15.299.459.9At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPO.I.C.G.H.G.
15.099.4157.3At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
14.599.426.6At4g21380827890ARK3 (A. THALIANA RECEPTOR KINASE 3)encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.O.I.C.G.H.G.
14.199.434.8At5g59130836031subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
13.999.464.4At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
13.799.484.7At4g12310826840CYP706A5member of CYP706AO.I.C.G.H.G.
13.699.4131.7At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
13.499.453.4At5g54610835550ANK (ankyrin)Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.O.I.C.G.H.G.
12.799.344.1At1g53035841737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.399.368.1At3g26290822232CYP71B26putative cytochrome P450O.I.C.G.H.G.
11.999.3199.0At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
11.799.3403.9At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
11.699.315.7At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
11.599.322.3At1g66980843016protein kinase family protein / glycerophosphoryl diester phosphodiesterase family proteinF:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVAO.I.C.G.H.G.
11.299.2139.0At1g10370837576ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMFO.I.C.G.H.G.
11.099.2198.0At1g10760837619SEX1 (STARCH EXCESS 1)Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.O.I.C.G.H.G.
10.699.2149.3At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
10.599.214.2At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
10.299.223.9At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.999.1234.6At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.C.G.H.G.
9.699.164.1At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.699.116.8At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
9.499.1230.0At4g04020825714FIB (FIBRILLIN)Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection.O.I.C.G.H.G.
9.399.177.9At2g20570816579GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.O.I.C.G.H.G.
9.399.136.7At1g78995844240unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
8.899.040.5At2g39920818579acid phosphatase class B family proteinF:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBOO.I.C.G.H.G.
8.799.0298.9At3g09440820102heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)F:ATP binding;P:protein folding, response to cadmium ion, response to heat;C:in 7 components;OBMFPVAO.I.C.G.H.G.
8.699.0107.3At3g61820825355aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.



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