Microarray experiments to specifically-expressed genes

GSM ID GSM131118
Assay name AtGen_B-4_1-4-1_REP_1_ATH1
GSE experiment GSE5615: AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
131.399.9238.6At1g65390842851ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO.I.C.G.H.G.
112.199.9188.9At1g02400839508GA2OX6 (GIBBERELLIN 2-OXIDASE 6)Encodes a gibberellin 2-oxidase.O.I.C.G.H.G.
99.999.9108.2At3g55840824750-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
94.999.9221.0At1g17420838314LOX3LipoxygenaseO.I.C.G.H.G.
85.599.953.0At5g53750835456-F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;PO.I.C.G.H.G.
75.199.934.9At5g54720835561ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
73.399.9175.6At3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.O.I.C.G.H.G.
72.999.965.4At3g25180822110CYP82G1member of CYP82GO.I.C.G.H.G.
70.399.970.4At4g32800829416AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
65.599.8193.8At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.C.G.H.G.
65.099.8115.6At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
62.299.8146.4At5g12340831109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
60.999.8171.3At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
59.399.854.6At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
58.199.836.9At3g21070821659NADK1 (NAD KINASE 1)Encodes a protein with NAD(H) kinase activity.O.I.C.G.H.G.
53.999.870.0At1g09940837528HEMA2Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteinsO.I.C.G.H.G.
53.399.879.0At4g29740829096CKX4 (CYTOKININ OXIDASE 4)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
52.499.894.2At4g21410827893protein kinase family proteinF:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVAO.I.C.G.H.G.
48.499.8172.9At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
46.399.840.8At4g28350828950lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
44.999.875.5At4g08170826367inositol 1,3,4-trisphosphate 5/6-kinase family proteinF:magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity;P:response to wounding;C:nucleus, cytoplasm;PMOBO.I.C.G.H.G.
44.899.8190.3At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFO.I.C.G.H.G.
43.999.897.4At1g66160842931U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
42.799.844.7At5g44050834428MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
42.499.844.3At3g50760824240GATL2 (Galacturonosyltransferase-like 2)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
41.899.8240.5At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
41.599.862.3At1g51820841609leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
41.399.8314.6At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
40.699.859.8At5g05190830401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVO.I.C.G.H.G.
40.299.8152.9At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
39.199.8137.1At3g01830820033calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
38.199.8316.6At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.O.I.C.G.H.G.
38.099.8153.2At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.O.I.C.G.H.G.
37.499.732.0At1g62840842584unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.199.768.1At1g76070843939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
35.799.763.1At2g27660817312DC1 domain-containing proteinF:zinc ion binding;P:unknown;C:chloroplast;BPMOFVAO.I.C.G.H.G.
34.699.764.5At1g80820844421CCR2 (CINNAMOYL COA REDUCTASE)Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.O.I.C.G.H.G.
34.399.740.5At2g42360818837zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
32.299.759.0At3g58620825031TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4)F:binding;P:cell redox homeostasis;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
31.999.7143.9At1g44350841026ILL6encodes a protein similar to IAA amino acid conjugate hydrolase.O.I.C.G.H.G.
31.599.7108.5At4g31550829282WRKY11member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.O.I.C.G.H.G.
29.799.795.2At4g35480829700RHA3BEncodes a putative RING-H2 finger protein RHA3b.O.I.C.G.H.G.
29.699.736.9At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.O.I.C.G.H.G.
29.299.7201.1At3g44860823620FAMT (farnesoic acid carboxyl-O-methyltransferase)Encodes a farnesoic acid carboxyl-O-methyltransferase.O.I.C.G.H.G.
28.499.7121.0At2g39200818505MLO12 (MILDEW RESISTANCE LOCUS O 12)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
28.399.763.3At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
28.199.786.0At5g25440832618protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVAO.I.C.G.H.G.
27.999.7208.8At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
27.999.768.7At3g47380823892invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.799.798.6At3g52450824410PUB22 (PLANT U-BOX 22)Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
27.299.7107.9At4g18950827630ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:nucleus, cytoplasm;MOPBFVAO.I.C.G.H.G.
26.799.765.6At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
26.699.7140.8At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
26.199.762.6At5g49520835012WRKY48member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
26.099.7108.0At2g27500817295glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFOO.I.C.G.H.G.
25.999.7220.7At2g38240818403oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
25.099.677.9At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
25.099.637.2At1g64380842745AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
24.999.6208.3At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
24.999.645.0At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAO.I.C.G.H.G.
24.899.676.6At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPO.I.C.G.H.G.
24.799.614.5At2g23770816909protein kinase family protein / peptidoglycan-binding LysM domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
24.599.695.9At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
24.499.6293.0At5g42650834273AOS (ALLENE OXIDE SYNTHASE)Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.O.I.C.G.H.G.
24.199.658.4At4g01250827896WRKY22member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
23.899.6347.1At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBO.I.C.G.H.G.
23.599.6189.3At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)O.I.C.G.H.G.
23.499.6159.8At4g31800829308WRKY18Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.C.G.H.G.
23.399.617.8At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVO.I.C.G.H.G.
23.299.6192.5At3g02880821198leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall;PMOBFVAO.I.C.G.H.G.
22.999.672.8At1g51800841606leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
22.899.6262.3At2g17840816293ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.O.I.C.G.H.G.
22.599.6207.5At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
22.599.659.0At1g59910842285formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVAO.I.C.G.H.G.
22.199.6292.1At3g57450824912unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.199.6259.3At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
21.999.6105.4At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
21.799.616.9At1g74330843774ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
21.599.634.3At3g13050820491transporter-relatedF:carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;BMFOPAO.I.C.G.H.G.
21.499.6100.8At5g18150831933unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.399.693.0At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
21.299.6126.9At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.799.680.4At5g23490832415unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
20.599.673.7At3g63380825513calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
20.499.610.8At1g61610842457S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
20.299.653.2At1g30040839883ATGA2OX2 (GIBBERELLIN 2-OXIDASE)Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
20.299.635.6At4g21400827892protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.999.6176.6At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
19.699.690.8At3g02840821225immediate-early fungal elicitor family proteinF:binding;P:response to other organism, response to ozone;C:unknown;POO.I.C.G.H.G.
19.399.6126.4At5g54170835505-F:molecular_function unknown;P:response to wounding;C:unknown;MPOO.I.C.G.H.G.
19.399.660.3At5g01540831722LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.C.G.H.G.
19.399.643.3At1g78280844163transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFPO.I.C.G.H.G.
19.199.6119.7At1g22400838846UGT85A1F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
19.199.654.7At4g28085828924unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
19.099.5167.9At1g57980842165purine permease-relatedF:purine transmembrane transporter activity;P:unknown;C:unknown;PBOO.I.C.G.H.G.
18.999.5133.7At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVO.I.C.G.H.G.
18.799.543.7At1g51790841605kinaseF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.699.578.2At4g20780827826calcium-binding protein, putativeF:calcium ion binding;P:unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
18.599.597.6At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
18.499.5184.7At3g52470824412harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.



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