Microarray experiments to specifically-expressed genes

GSM ID GSM131110
Assay name AtGen_B-38_3-3-4_REP3_ATH1
GSE experiment GSE5615: AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
128.899.9138.6At5g47330834780palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFOO.I.C.G.H.G.
62.299.868.7At2g39710818555aspartyl protease family proteinEncodes a Cysteine-rich peptide (CRP) family proteinO.I.C.G.H.G.
34.199.786.6At2g16630816164proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
29.499.791.5At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
26.199.7294.5At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
25.899.7181.4At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
23.799.6202.1At1g10370837576ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMFO.I.C.G.H.G.
23.699.664.4At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.O.I.C.G.H.G.
22.499.685.6At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
21.999.667.3At3g43270823402pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFMO.I.C.G.H.G.
21.199.6165.3At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
19.999.6116.1At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
19.999.6107.4At5g07010830592ST2A (SULFOTRANSFERASE 2A)Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).O.I.C.G.H.G.
19.299.675.7At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
18.099.5145.1At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
18.099.597.0At4g12310826840CYP706A5member of CYP706AO.I.C.G.H.G.
17.599.564.3At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPO.I.C.G.H.G.
16.499.551.0At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
15.899.512.6At3g16360820883AHP4 (HPT PHOSPHOTRANSMITTER 4)Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
15.799.5159.7At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOO.I.C.G.H.G.
15.799.5143.7At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
15.699.523.3At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
15.399.447.4At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
15.299.439.3At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
14.299.416.1At1g02460839443glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;PFBOMVAO.I.C.G.H.G.
14.199.423.3At1g64170842721ATCHX16 (CATION/H+ EXCHANGER 16)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
14.099.458.5At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
13.999.4277.5At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.C.G.H.G.
13.599.445.5At1g53035841737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.499.4431.6At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
13.499.447.7At3g47380823892invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.399.416.9At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
13.299.416.5At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
12.899.3109.9At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVO.I.C.G.H.G.
12.899.321.7At1g66910843009protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.899.311.7At4g16880827396disease resistance protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMO.I.C.G.H.G.
12.799.395.9At5g57710835878heat shock protein-relatedF:protein binding;P:protein metabolic process;C:unknown;BOPFMAO.I.C.G.H.G.
11.999.327.5At3g09540820111pectate lyase family proteinF:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFOO.I.C.G.H.G.
11.999.322.5At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
11.999.310.6At4g29610829082cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
11.899.324.0At4g21380827890ARK3 (A. THALIANA RECEPTOR KINASE 3)encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.O.I.C.G.H.G.
11.799.3125.1At3g61820825355aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.
11.599.322.3At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
11.399.3252.5At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
11.299.2199.0At5g42650834273AOS (ALLENE OXIDE SYNTHASE)Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.O.I.C.G.H.G.
11.099.236.6At4g16860827395RPP4 (recognition of peronospora parasitica 4)Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.O.I.C.G.H.G.
10.999.2282.9At4g23600828460CORI3 (CORONATINE INDUCED 1)Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.O.I.C.G.H.G.
10.899.258.1At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
10.899.243.2At1g04980839355ATPDIL2-2 (PDI-LIKE 2-2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.O.I.C.G.H.G.
10.799.2195.7At1g10760837619SEX1 (STARCH EXCESS 1)Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.O.I.C.G.H.G.
10.699.267.6At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.263.3At3g26290822232CYP71B26putative cytochrome P450O.I.C.G.H.G.
10.699.228.6At4g03410827932peroxisomal membrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPOO.I.C.G.H.G.
10.699.213.8At4g23130828412CRK5 (CYSTEINE-RICH RLK5)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
10.699.213.3At5g47130834759Bax inhibitor-1 family / BI-1 familyF:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFVO.I.C.G.H.G.
10.599.221.6At3g45260823664zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBO.I.C.G.H.G.
10.499.2185.1At5g44580834486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.499.2159.1At4g34230829572ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.O.I.C.G.H.G.
10.499.277.8At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
10.499.257.5At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
10.499.231.8At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
10.499.217.5At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
10.399.229.8At5g59130836031subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
10.299.2266.4At3g16470820895JR1JA-responsive geneO.I.C.G.H.G.
10.299.281.7At2g20570816579GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.O.I.C.G.H.G.
10.099.256.7At4g34240829573ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)Aldehyde dehydrogenase induced by ABA and dehydrationO.I.C.G.H.G.
10.099.213.6At1g01420837503UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
9.899.1248.1At4g30650829188hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOO.I.C.G.H.G.
9.799.1232.8At4g04020825714FIB (FIBRILLIN)Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection.O.I.C.G.H.G.
9.599.136.6At1g53870841824unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.499.1124.7At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
9.399.1159.6At2g37710818348RLK (receptor lectin kinase)Induced in response to Salicylic acid.O.I.C.G.H.G.
9.299.173.1At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
9.299.135.1At1g51610841586cation efflux family protein / metal tolerance protein, putative (MTPc4)F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAPO.I.C.G.H.G.
9.099.1258.1At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
9.099.1157.2At2g40840818682DPE2 (DISPROPORTIONATING ENZYME 2)Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose.O.I.C.G.H.G.
9.099.128.0At3g55760824742unknown proteinF:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFBO.I.C.G.H.G.
8.999.037.8At1g09240837444NAS3 (NICOTIANAMINE SYNTHASE 3)Encodes a nicotianamine synthase.O.I.C.G.H.G.
8.799.091.7At2g46370819244JAR1 (JASMONATE RESISTANT 1)Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.O.I.C.G.H.G.



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