CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131108

Assay name Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
395.4 100.0 85.8 At1g52180 841648 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA O.I. C.G. H.G.
359.1 100.0 1152.1 At2g07727 815400 cytochrome b (MTCYB) (COB) (CYTB) F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA O.I. C.G. H.G.
146.0 99.9 52.8 At1g02620 839269 GTP-binding protein (SAR1A) F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF O.I. C.G. H.G.
113.4 99.9 23.4 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
108.8 99.9 26.1 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
108.3 99.9 17.8 At5g18350 831953 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
105.4 99.9 22.4 At1g31520 840042 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
102.4 99.9 34.4 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF O.I. C.G. H.G.
100.8 99.9 16.8 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
93.0 99.9 25.8 At3g20900 821639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
86.8 99.9 17.3 At4g23960 828496 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
85.2 99.9 18.5 At3g27840 822404 RPL12-B (ribosomal protein l12-b) 50S ribosomal protein L12-B O.I. C.G. H.G.
83.5 99.9 25.3 At1g50470 841469 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
77.0 99.9 19.7 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
73.8 99.9 20.4 At4g36105 829767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV O.I. C.G. H.G.
70.3 99.9 20.5 At3g44180 823540 syntaxin-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.4 99.9 33.5 At1g77860 844122 KOM (KOMPEITO) mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein O.I. C.G. H.G.
65.3 99.8 12.7 At5g28560 832953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole O.I. C.G. H.G.
65.1 99.8 6.8 At1g39350 840697 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
62.4 99.8 23.4 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV O.I. C.G. H.G.
61.8 99.8 13.1 At4g36450 829797 ATMPK14 (Mitogen-activated protein kinase 14) member of MAP Kinase O.I. C.G. H.G.
61.6 99.8 16.2 At2g33720 817937 transcription factor F:transcription factor activity;P:unknown;C:chloroplast;P O.I. C.G. H.G.
60.0 99.8 13.0 At2g36940 818268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.7 99.8 16.1 At1g56270 842080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.4 99.8 29.0 At5g52975 835376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
57.3 99.8 15.2 At1g07025 837213 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
57.0 99.8 18.8 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
56.5 99.8 19.5 At2g14640 3767779 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
56.0 99.8 29.5 At4g38760 830031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
55.8 99.8 11.3 At5g38370 833820 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;P O.I. C.G. H.G.
55.2 99.8 20.4 At4g17710 827492 HDG4 (HOMEODOMAIN GLABROUS 4) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
55.1 99.8 10.7 At1g50530 841475 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.1 99.8 24.7 At2g10930 815557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.1 99.8 22.0 At1g35617 840460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. C.G. H.G.
49.5 99.8 13.1 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
47.7 99.8 14.1 At4g11940 826801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.5 99.8 20.1 At1g19930 838582 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVA O.I. C.G. H.G.
47.1 99.8 12.0 At1g56380 842091 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
46.8 99.8 19.4 At1g49110 841334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.2 99.8 19.2 At2g33260 817889 tryptophan/tyrosine permease family protein F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
45.3 99.8 64.2 At2g07725 815398 60S ribosomal protein L5 (RPL5) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO O.I. C.G. H.G.
45.0 99.8 17.0 At3g58860 825055 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.9 99.8 20.3 At3g46360 823782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.4 99.8 19.3 At4g04760 825812 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
44.1 99.8 30.2 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
43.8 99.8 15.0 At1g31240 840012 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
43.8 99.8 14.1 At3g58890 825058 syntaxin-related family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
43.7 99.8 31.3 At1g14260 837987 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
43.4 99.8 17.5 At1g25460 839132 oxidoreductase family protein F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process, flavonoid biosynthetic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
43.2 99.8 23.1 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. O.I. C.G. H.G.
42.7 99.8 14.5 At3g26160 822216 CYP71B17 putative cytochrome P450 O.I. C.G. H.G.
42.5 99.8 22.8 At2g05200 3768310 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.4 99.8 13.3 At3g25280 822122 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
41.7 99.8 44.7 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
41.5 99.8 14.5 At1g78840 844221 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
41.2 99.8 20.5 At4g17450 3770187 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
41.1 99.8 24.1 At3g43900 823506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.7 99.8 22.6 At1g34440 840347 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.7 99.8 17.9 At3g10600 820229 CAT7 (CATIONIC AMINO ACID TRANSPORTER 7) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. O.I. C.G. H.G.
40.5 99.8 19.1 At3g28680 822498 prolylcarboxypeptidase-related F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO O.I. C.G. H.G.
40.1 99.8 18.2 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF O.I. C.G. H.G.
40.0 99.8 16.9 At2g34360 817999 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
39.9 99.8 12.0 At3g31023 3769170 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
39.8 99.8 6.0 At3g44080 823526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
39.4 99.8 15.8 At2g35590 3768541 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
39.4 99.8 12.3 At3g31320 822882 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
39.1 99.8 33.3 At5g17250 831589 catalytic/ transferase F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBP O.I. C.G. H.G.
39.0 99.8 7.3 At5g32610 833243 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
38.9 99.8 14.1 At3g13170 820506 ATSPO11-1 Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. O.I. C.G. H.G.
38.9 99.8 11.4 At2g40580 818653 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
38.5 99.8 19.5 At3g54060 824573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV O.I. C.G. H.G.
38.4 99.8 28.7 At2g30790 817630 PSBP-2 (photosystem II subunit P-2) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. O.I. C.G. H.G.
38.3 99.8 39.6 At4g20310 827778 metalloendopeptidase F:metalloendopeptidase activity;P:proteolysis;C:membrane;MAPOBF O.I. C.G. H.G.
38.3 99.8 22.0 At2g24310 816967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
38.1 99.8 18.0 At2g33020 817864 AtRLP24 (Receptor Like Protein 24) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
37.6 99.7 6.3 At4g12180 3769991 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
37.5 99.7 17.7 At4g05620 825934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.3 99.7 19.3 At3g20700 821617 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.2 99.7 451.8 At1g04820 839405 TUA4 Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. O.I. C.G. H.G.
37.2 99.7 14.7 At3g18460 821375 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
36.9 99.7 20.2 At5g66710 836804 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
36.4 99.7 17.4 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) O.I. C.G. H.G.
36.4 99.7 17.2 At5g25860 832655 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
36.4 99.7 16.6 At5g48420 834897 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.4 99.7 15.4 At1g24640 3766791 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.3 99.7 11.8 At5g12910 831131 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.
35.6 99.7 16.6 At5g45770 834616 AtRLP55 (Receptor Like Protein 55) F:protein binding;P:unknown;C:unknown;PMBOFAV O.I. C.G. H.G.
35.2 99.7 13.1 At5g28310 832915 oxidoreductase-related F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
34.7 99.7 15.1 At3g49150 824076 - F:molecular_function unknown;P:protein insertion into membrane;C:integral to membrane;PMF O.I. C.G. H.G.
34.3 99.7 18.4 At5g36870 833654 ATGSL09 (glucan synthase-like 9) encodes a gene similar to callose synthase O.I. C.G. H.G.
34.2 99.7 7.8 At2g14450 815933 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.1 99.7 10.0 At3g19085 821443 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.0 99.7 10.6 At2g18970 816414 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
33.9 99.7 27.2 At1g28220 839716 ATPUP3 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
33.7 99.7 12.5 At3g42700 823290 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
33.3 99.7 7.3 At1g14430 838005 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFOM O.I. C.G. H.G.
32.8 99.7 15.4 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
32.8 99.7 7.6 At1g77780 844115 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO O.I. C.G. H.G.
32.7 99.7 20.9 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
32.7 99.7 7.0 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
395.4	100.0	85.8	At1g52180	841648	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA	O.I.	C.G.	H.G.
359.1	100.0	1152.1	At2g07727	815400	cytochrome b (MTCYB) (COB) (CYTB)	F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA	O.I.	C.G.	H.G.
146.0	99.9	52.8	At1g02620	839269	GTP-binding protein (SAR1A)	F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF	O.I.	C.G.	H.G.
113.4	99.9	23.4	At5g41640	834166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
108.8	99.9	26.1	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
108.3	99.9	17.8	At5g18350	831953	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
105.4	99.9	22.4	At1g31520	840042	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
102.4	99.9	34.4	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	O.I.	C.G.	H.G.
100.8	99.9	16.8	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
93.0	99.9	25.8	At3g20900	821639	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
86.8	99.9	17.3	At4g23960	828496	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
85.2	99.9	18.5	At3g27840	822404	RPL12-B (ribosomal protein l12-b)	50S ribosomal protein L12-B	O.I.	C.G.	H.G.
83.5	99.9	25.3	At1g50470	841469	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
77.0	99.9	19.7	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
73.8	99.9	20.4	At4g36105	829767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV	O.I.	C.G.	H.G.
70.3	99.9	20.5	At3g44180	823540	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.4	99.9	33.5	At1g77860	844122	KOM (KOMPEITO)	mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein	O.I.	C.G.	H.G.
65.3	99.8	12.7	At5g28560	832953	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole	O.I.	C.G.	H.G.
65.1	99.8	6.8	At1g39350	840697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
62.4	99.8	23.4	At4g17580	827475	Bax inhibitor-1 family protein / BI-1 family protein	F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV	O.I.	C.G.	H.G.
61.8	99.8	13.1	At4g36450	829797	ATMPK14 (Mitogen-activated protein kinase 14)	member of MAP Kinase	O.I.	C.G.	H.G.
61.6	99.8	16.2	At2g33720	817937	transcription factor	F:transcription factor activity;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
60.0	99.8	13.0	At2g36940	818268	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.7	99.8	16.1	At1g56270	842080	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.4	99.8	29.0	At5g52975	835376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
57.3	99.8	15.2	At1g07025	837213	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
57.0	99.8	18.8	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.5	99.8	19.5	At2g14640	3767779	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
56.0	99.8	29.5	At4g38760	830031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
55.8	99.8	11.3	At5g38370	833820	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;P	O.I.	C.G.	H.G.
55.2	99.8	20.4	At4g17710	827492	HDG4 (HOMEODOMAIN GLABROUS 4)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
55.1	99.8	10.7	At1g50530	841475	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.1	99.8	24.7	At2g10930	815557	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.1	99.8	22.0	At1g35617	840460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	C.G.	H.G.
49.5	99.8	13.1	At5g51420	835216	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	F:acyltransferase activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
47.7	99.8	14.1	At4g11940	826801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.5	99.8	20.1	At1g19930	838582	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVA	O.I.	C.G.	H.G.
47.1	99.8	12.0	At1g56380	842091	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
46.8	99.8	19.4	At1g49110	841334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.2	99.8	19.2	At2g33260	817889	tryptophan/tyrosine permease family protein	F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
45.3	99.8	64.2	At2g07725	815398	60S ribosomal protein L5 (RPL5)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO	O.I.	C.G.	H.G.
45.0	99.8	17.0	At3g58860	825055	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.9	99.8	20.3	At3g46360	823782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.4	99.8	19.3	At4g04760	825812	sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
44.1	99.8	30.2	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
43.8	99.8	15.0	At1g31240	840012	DNA binding	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
43.8	99.8	14.1	At3g58890	825058	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
43.7	99.8	31.3	At1g14260	837987	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
43.4	99.8	17.5	At1g25460	839132	oxidoreductase family protein	F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process, flavonoid biosynthetic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
43.2	99.8	23.1	At5g15380	831390	DRM1 (domains rearranged methylase 1)	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	O.I.	C.G.	H.G.
42.7	99.8	14.5	At3g26160	822216	CYP71B17	putative cytochrome P450	O.I.	C.G.	H.G.
42.5	99.8	22.8	At2g05200	3768310	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.4	99.8	13.3	At3g25280	822122	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
41.7	99.8	44.7	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
41.5	99.8	14.5	At1g78840	844221	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
41.2	99.8	20.5	At4g17450	3770187	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
41.1	99.8	24.1	At3g43900	823506	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.7	99.8	22.6	At1g34440	840347	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.7	99.8	17.9	At3g10600	820229	CAT7 (CATIONIC AMINO ACID TRANSPORTER 7)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	O.I.	C.G.	H.G.
40.5	99.8	19.1	At3g28680	822498	prolylcarboxypeptidase-related	F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO	O.I.	C.G.	H.G.
40.1	99.8	18.2	At3g22250	821795	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF	O.I.	C.G.	H.G.
40.0	99.8	16.9	At2g34360	817999	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
39.9	99.8	12.0	At3g31023	3769170	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
39.8	99.8	6.0	At3g44080	823526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
39.4	99.8	15.8	At2g35590	3768541	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
39.4	99.8	12.3	At3g31320	822882	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
39.1	99.8	33.3	At5g17250	831589	catalytic/ transferase	F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBP	O.I.	C.G.	H.G.
39.0	99.8	7.3	At5g32610	833243	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
38.9	99.8	14.1	At3g13170	820506	ATSPO11-1	Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.	O.I.	C.G.	H.G.
38.9	99.8	11.4	At2g40580	818653	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
38.5	99.8	19.5	At3g54060	824573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV	O.I.	C.G.	H.G.
38.4	99.8	28.7	At2g30790	817630	PSBP-2 (photosystem II subunit P-2)	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	O.I.	C.G.	H.G.
38.3	99.8	39.6	At4g20310	827778	metalloendopeptidase	F:metalloendopeptidase activity;P:proteolysis;C:membrane;MAPOBF	O.I.	C.G.	H.G.
38.3	99.8	22.0	At2g24310	816967	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
38.1	99.8	18.0	At2g33020	817864	AtRLP24 (Receptor Like Protein 24)	F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
37.6	99.7	6.3	At4g12180	3769991	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
37.5	99.7	17.7	At4g05620	825934	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.3	99.7	19.3	At3g20700	821617	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.2	99.7	451.8	At1g04820	839405	TUA4	Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.	O.I.	C.G.	H.G.
37.2	99.7	14.7	At3g18460	821375	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
36.9	99.7	20.2	At5g66710	836804	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
36.4	99.7	17.4	At4g38590	830016	glycosyl hydrolase family 35 protein	putative beta-galactosidase (BGAL14 gene)	O.I.	C.G.	H.G.
36.4	99.7	17.2	At5g25860	832655	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
36.4	99.7	16.6	At5g48420	834897	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.4	99.7	15.4	At1g24640	3766791	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.3	99.7	11.8	At5g12910	831131	histone H3, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.
35.6	99.7	16.6	At5g45770	834616	AtRLP55 (Receptor Like Protein 55)	F:protein binding;P:unknown;C:unknown;PMBOFAV	O.I.	C.G.	H.G.
35.2	99.7	13.1	At5g28310	832915	oxidoreductase-related	F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
34.7	99.7	15.1	At3g49150	824076	-	F:molecular_function unknown;P:protein insertion into membrane;C:integral to membrane;PMF	O.I.	C.G.	H.G.
34.3	99.7	18.4	At5g36870	833654	ATGSL09 (glucan synthase-like 9)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
34.2	99.7	7.8	At2g14450	815933	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.1	99.7	10.0	At3g19085	821443	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.0	99.7	10.6	At2g18970	816414	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
33.9	99.7	27.2	At1g28220	839716	ATPUP3	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
33.7	99.7	12.5	At3g42700	823290	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
33.3	99.7	7.3	At1g14430	838005	glyoxal oxidase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
32.8	99.7	15.4	At5g44850	834515	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
32.8	99.7	7.6	At1g77780	844115	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
32.7	99.7	20.9	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
32.7	99.7	7.0	At2g35580	818123	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.

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GSM ID	GSM131108
Assay name	Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1
GSE experiment	GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Microarray experiments to specifically-expressed genes

GSM ID GSM131108 Assay name Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1 GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

GSM ID GSM131108

Assay name Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)