CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131107

Assay name Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
388.0 100.0 1197.5 At2g07727 815400 cytochrome b (MTCYB) (COB) (CYTB) F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA O.I. C.G. H.G.
318.9 100.0 77.0 At1g52180 841648 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA O.I. C.G. H.G.
121.3 99.9 48.1 At1g02620 839269 GTP-binding protein (SAR1A) F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF O.I. C.G. H.G.
86.2 99.9 25.7 At1g50470 841469 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
80.9 99.9 30.6 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF O.I. C.G. H.G.
70.9 99.9 7.1 At1g39350 840697 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
63.8 99.8 17.8 At5g66260 836758 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
60.6 99.8 14.5 At4g23960 828496 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.6 99.8 76.0 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
59.1 99.8 15.8 At2g33720 817937 transcription factor F:transcription factor activity;P:unknown;C:chloroplast;P O.I. C.G. H.G.
58.3 99.8 12.5 At1g02580 839422 MEA (MEDEA) Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization O.I. C.G. H.G.
56.9 99.8 72.0 At2g07725 815398 60S ribosomal protein L5 (RPL5) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO O.I. C.G. H.G.
52.7 99.8 19.4 At3g20900 821639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
52.2 99.8 37.6 At1g16690 838238 transcription factor-related F:transcription factor activity;P:regulation of transcription;C:unknown;MFPO O.I. C.G. H.G.
52.0 99.8 9.6 At1g77780 844115 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO O.I. C.G. H.G.
49.2 99.8 15.7 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
49.0 99.8 17.5 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
48.4 99.8 15.5 At5g01860 831739 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;P O.I. C.G. H.G.
48.1 99.8 411.0 At1g50250 841447 FTSH1 (FtsH protease 1) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. O.I. C.G. H.G.
47.8 99.8 11.6 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.2 99.8 12.3 At2g40580 818653 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
44.5 99.8 14.6 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.9 99.8 10.1 At3g10240 820186 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.9 99.8 9.4 At1g50530 841475 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.9 99.8 7.8 At2g36920 818266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
41.4 99.8 15.3 At4g36105 829767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV O.I. C.G. H.G.
41.4 99.8 12.9 At3g27840 822404 RPL12-B (ribosomal protein l12-b) 50S ribosomal protein L12-B O.I. C.G. H.G.
41.4 99.8 11.0 At5g18350 831953 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
41.2 99.8 18.4 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF O.I. C.G. H.G.
41.0 99.8 15.2 At3g52510 824416 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
40.8 99.8 24.2 At2g31050 817657 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POA O.I. C.G. H.G.
40.6 99.8 19.3 At3g46360 823782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.4 99.8 29.5 At2g30790 817630 PSBP-2 (photosystem II subunit P-2) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. O.I. C.G. H.G.
40.3 99.8 16.7 At1g09000 837421 ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) NPK1-related protein kinase 1S O.I. C.G. H.G.
39.8 99.8 11.3 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation O.I. C.G. H.G.
39.4 99.8 10.4 At4g13570 826990 HTA4 Encodes HTA4, a histone H2A protein. O.I. C.G. H.G.
39.2 99.8 11.6 At3g20540 821600 POLGAMMA1 (polymerase gamma 1) F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP O.I. C.G. H.G.
39.2 99.8 11.6 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
38.4 99.8 12.1 At5g12910 831131 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.
37.8 99.8 18.2 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV O.I. C.G. H.G.
36.4 99.7 13.1 At1g31520 840042 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.2 99.7 9.5 At5g28560 832953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole O.I. C.G. H.G.
36.1 99.7 24.4 At5g03800 831717 EMB175 (EMBRYO DEFECTIVE 175) Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. O.I. C.G. H.G.
35.4 99.7 7.9 At2g14450 815933 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.4 99.7 25.1 At1g67760 843101 ATP binding / protein binding / unfolded protein binding F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP O.I. C.G. H.G.
34.3 99.7 9.9 At1g06310 837141 ACX6 (ACYL-COA OXIDASE 6) Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo. O.I. C.G. H.G.
33.7 99.7 19.4 At3g28020 822426 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.7 99.7 18.4 At1g23420 838950 INO (INNER NO OUTER) Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. O.I. C.G. H.G.
33.5 99.7 18.9 At5g52800 835357 DNA primase F:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPV O.I. C.G. H.G.
33.0 99.7 18.7 At2g42720 818872 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
32.8 99.7 13.6 At1g40230 840758 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
32.7 99.7 20.1 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. O.I. C.G. H.G.
32.7 99.7 17.2 At3g28680 822498 prolylcarboxypeptidase-related F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO O.I. C.G. H.G.
32.5 99.7 32.8 At5g13470 831189 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.1 99.7 18.1 At4g17450 3770187 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
31.8 99.7 15.1 At5g66220 836754 chalcone isomerase F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;P O.I. C.G. H.G.
30.8 99.7 17.0 At2g37830 3768017 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.3 99.7 40.4 At2g20050 816524 ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase F:cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation;C:plasma membrane;MOPFBVA O.I. C.G. H.G.
30.2 99.7 15.8 At5g41710 3771395 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.0 99.7 15.5 At1g12630 837819 DNA binding / transcription activator/ transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
29.8 99.7 13.9 At1g43920 840991 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.7 99.7 23.9 At3g32270 822998 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.5 99.7 6.7 At4g06529 3770415 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.4 99.7 17.5 At4g28090 828925 sks10 (SKU5 Similar 10) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
29.3 99.7 77.0 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
29.2 99.7 24.6 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
29.2 99.7 17.0 At3g20700 821617 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.1 99.7 17.1 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
29.1 99.7 11.4 At1g72130 843544 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
28.9 99.7 23.9 At4g31710 829299 ATGLR2.4 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
28.7 99.7 15.2 At1g49110 841334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.6 99.7 26.9 At2g05720 815121 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
28.6 99.7 11.9 At1g01450 837060 protein kinase-related F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
28.6 99.7 6.5 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
28.5 99.7 927.7 At5g25980 832667 TGG2 (GLUCOSIDE GLUCOHYDROLASE 2) Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. O.I. C.G. H.G.
28.5 99.7 35.6 At3g14130 820630 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA O.I. C.G. H.G.
28.5 99.7 21.5 At1g77860 844122 KOM (KOMPEITO) mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein O.I. C.G. H.G.
28.4 99.7 15.2 At5g25860 832655 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
28.2 99.7 6.2 At4g02190 828115 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
28.1 99.7 13.8 At2g05600 815109 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
28.0 99.7 67.0 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
28.0 99.7 14.6 At2g24255 816960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.7 99.7 16.8 At1g28040 839697 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
27.6 99.7 17.3 At1g77390 844075 CYCA1 core cell cycle genes O.I. C.G. H.G.
27.4 99.7 24.5 At1g28220 839716 ATPUP3 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
27.4 99.7 14.8 At2g33260 817889 tryptophan/tyrosine permease family protein F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
26.9 99.7 13.2 At3g58860 825055 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.8 99.7 9.1 At3g18700 821401 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
26.8 99.7 3.5 At1g35200 3766935 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
26.7 99.7 11.6 At2g27520 817298 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
26.2 99.7 10.3 At1g07025 837213 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
26.1 99.7 11.6 At5g46360 834679 KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3) Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. O.I. C.G. H.G.
26.0 99.7 804.2 At5g19140 832034 AILP1 F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV O.I. C.G. H.G.
25.7 99.7 11.2 At1g01180 839239 unknown protein F:unknown;P:biological_process unknown;C:unknown;OBPM O.I. C.G. H.G.
25.6 99.7 19.1 At4g17130 - - O.I. C.G. H.G.
25.5 99.7 22.1 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
25.5 99.7 11.2 At2g03370 814866 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF O.I. C.G. H.G.
25.3 99.6 372.3 At1g04820 839405 TUA4 Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. O.I. C.G. H.G.
25.3 99.6 9.0 At5g18880 832006 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.2 99.6 11.3 At2g04560 814998 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
388.0	100.0	1197.5	At2g07727	815400	cytochrome b (MTCYB) (COB) (CYTB)	F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA	O.I.	C.G.	H.G.
318.9	100.0	77.0	At1g52180	841648	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA	O.I.	C.G.	H.G.
121.3	99.9	48.1	At1g02620	839269	GTP-binding protein (SAR1A)	F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF	O.I.	C.G.	H.G.
86.2	99.9	25.7	At1g50470	841469	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
80.9	99.9	30.6	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	O.I.	C.G.	H.G.
70.9	99.9	7.1	At1g39350	840697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
63.8	99.8	17.8	At5g66260	836758	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
60.6	99.8	14.5	At4g23960	828496	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.6	99.8	76.0	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
59.1	99.8	15.8	At2g33720	817937	transcription factor	F:transcription factor activity;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
58.3	99.8	12.5	At1g02580	839422	MEA (MEDEA)	Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization	O.I.	C.G.	H.G.
56.9	99.8	72.0	At2g07725	815398	60S ribosomal protein L5 (RPL5)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO	O.I.	C.G.	H.G.
52.7	99.8	19.4	At3g20900	821639	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
52.2	99.8	37.6	At1g16690	838238	transcription factor-related	F:transcription factor activity;P:regulation of transcription;C:unknown;MFPO	O.I.	C.G.	H.G.
52.0	99.8	9.6	At1g77780	844115	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
49.2	99.8	15.7	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
49.0	99.8	17.5	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
48.4	99.8	15.5	At5g01860	831739	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;P	O.I.	C.G.	H.G.
48.1	99.8	411.0	At1g50250	841447	FTSH1 (FtsH protease 1)	encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.	O.I.	C.G.	H.G.
47.8	99.8	11.6	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.2	99.8	12.3	At2g40580	818653	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
44.5	99.8	14.6	At5g41640	834166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.9	99.8	10.1	At3g10240	820186	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.9	99.8	9.4	At1g50530	841475	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.9	99.8	7.8	At2g36920	818266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
41.4	99.8	15.3	At4g36105	829767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV	O.I.	C.G.	H.G.
41.4	99.8	12.9	At3g27840	822404	RPL12-B (ribosomal protein l12-b)	50S ribosomal protein L12-B	O.I.	C.G.	H.G.
41.4	99.8	11.0	At5g18350	831953	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
41.2	99.8	18.4	At3g22250	821795	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF	O.I.	C.G.	H.G.
41.0	99.8	15.2	At3g52510	824416	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
40.8	99.8	24.2	At2g31050	817657	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POA	O.I.	C.G.	H.G.
40.6	99.8	19.3	At3g46360	823782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.4	99.8	29.5	At2g30790	817630	PSBP-2 (photosystem II subunit P-2)	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	O.I.	C.G.	H.G.
40.3	99.8	16.7	At1g09000	837421	ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1)	NPK1-related protein kinase 1S	O.I.	C.G.	H.G.
39.8	99.8	11.3	At5g48390	834894	ATZIP4	Defective in meiotic chromosome segregation	O.I.	C.G.	H.G.
39.4	99.8	10.4	At4g13570	826990	HTA4	Encodes HTA4, a histone H2A protein.	O.I.	C.G.	H.G.
39.2	99.8	11.6	At3g20540	821600	POLGAMMA1 (polymerase gamma 1)	F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP	O.I.	C.G.	H.G.
39.2	99.8	11.6	At5g51420	835216	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	F:acyltransferase activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
38.4	99.8	12.1	At5g12910	831131	histone H3, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.
37.8	99.8	18.2	At4g17580	827475	Bax inhibitor-1 family protein / BI-1 family protein	F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV	O.I.	C.G.	H.G.
36.4	99.7	13.1	At1g31520	840042	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.2	99.7	9.5	At5g28560	832953	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole	O.I.	C.G.	H.G.
36.1	99.7	24.4	At5g03800	831717	EMB175 (EMBRYO DEFECTIVE 175)	Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.	O.I.	C.G.	H.G.
35.4	99.7	7.9	At2g14450	815933	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.4	99.7	25.1	At1g67760	843101	ATP binding / protein binding / unfolded protein binding	F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP	O.I.	C.G.	H.G.
34.3	99.7	9.9	At1g06310	837141	ACX6 (ACYL-COA OXIDASE 6)	Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.	O.I.	C.G.	H.G.
33.7	99.7	19.4	At3g28020	822426	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.7	99.7	18.4	At1g23420	838950	INO (INNER NO OUTER)	Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.	O.I.	C.G.	H.G.
33.5	99.7	18.9	At5g52800	835357	DNA primase	F:DNA primase activity;P:DNA replication;C:cellular_component unknown;MOPV	O.I.	C.G.	H.G.
33.0	99.7	18.7	At2g42720	818872	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
32.8	99.7	13.6	At1g40230	840758	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
32.7	99.7	20.1	At5g15380	831390	DRM1 (domains rearranged methylase 1)	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	O.I.	C.G.	H.G.
32.7	99.7	17.2	At3g28680	822498	prolylcarboxypeptidase-related	F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO	O.I.	C.G.	H.G.
32.5	99.7	32.8	At5g13470	831189	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.1	99.7	18.1	At4g17450	3770187	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
31.8	99.7	15.1	At5g66220	836754	chalcone isomerase	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;P	O.I.	C.G.	H.G.
30.8	99.7	17.0	At2g37830	3768017	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.3	99.7	40.4	At2g20050	816524	ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase	F:cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation;C:plasma membrane;MOPFBVA	O.I.	C.G.	H.G.
30.2	99.7	15.8	At5g41710	3771395	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.0	99.7	15.5	At1g12630	837819	DNA binding / transcription activator/ transcription factor	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
29.8	99.7	13.9	At1g43920	840991	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.7	99.7	23.9	At3g32270	822998	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.5	99.7	6.7	At4g06529	3770415	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.4	99.7	17.5	At4g28090	828925	sks10 (SKU5 Similar 10)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
29.3	99.7	77.0	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
29.2	99.7	24.6	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
29.2	99.7	17.0	At3g20700	821617	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.1	99.7	17.1	At2g44580	819066	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
29.1	99.7	11.4	At1g72130	843544	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
28.9	99.7	23.9	At4g31710	829299	ATGLR2.4	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
28.7	99.7	15.2	At1g49110	841334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.6	99.7	26.9	At2g05720	815121	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
28.6	99.7	11.9	At1g01450	837060	protein kinase-related	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
28.6	99.7	6.5	At3g26040	822201	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
28.5	99.7	927.7	At5g25980	832667	TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)	Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.	O.I.	C.G.	H.G.
28.5	99.7	35.6	At3g14130	820630	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA	O.I.	C.G.	H.G.
28.5	99.7	21.5	At1g77860	844122	KOM (KOMPEITO)	mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein	O.I.	C.G.	H.G.
28.4	99.7	15.2	At5g25860	832655	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
28.2	99.7	6.2	At4g02190	828115	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
28.1	99.7	13.8	At2g05600	815109	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
28.0	99.7	67.0	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
28.0	99.7	14.6	At2g24255	816960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.7	99.7	16.8	At1g28040	839697	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
27.6	99.7	17.3	At1g77390	844075	CYCA1	core cell cycle genes	O.I.	C.G.	H.G.
27.4	99.7	24.5	At1g28220	839716	ATPUP3	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
27.4	99.7	14.8	At2g33260	817889	tryptophan/tyrosine permease family protein	F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
26.9	99.7	13.2	At3g58860	825055	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.8	99.7	9.1	At3g18700	821401	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
26.8	99.7	3.5	At1g35200	3766935	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
26.7	99.7	11.6	At2g27520	817298	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
26.2	99.7	10.3	At1g07025	837213	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
26.1	99.7	11.6	At5g46360	834679	KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)	Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.	O.I.	C.G.	H.G.
26.0	99.7	804.2	At5g19140	832034	AILP1	F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV	O.I.	C.G.	H.G.
25.7	99.7	11.2	At1g01180	839239	unknown protein	F:unknown;P:biological_process unknown;C:unknown;OBPM	O.I.	C.G.	H.G.
25.6	99.7	19.1	At4g17130		-	-	O.I.	C.G.	H.G.
25.5	99.7	22.1	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
25.5	99.7	11.2	At2g03370	814866	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF	O.I.	C.G.	H.G.
25.3	99.6	372.3	At1g04820	839405	TUA4	Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.	O.I.	C.G.	H.G.
25.3	99.6	9.0	At5g18880	832006	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.2	99.6	11.3	At2g04560	814998	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.

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GSM ID	GSM131107
Assay name	Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1
GSE experiment	GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Microarray experiments to specifically-expressed genes

GSM ID GSM131107 Assay name Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1 GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

GSM ID GSM131107

Assay name Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)