CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131106

Assay name Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
318.4 100.0 1084.7 At2g07727 815400 cytochrome b (MTCYB) (COB) (CYTB) F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA O.I. C.G. H.G.
284.9 100.0 72.8 At1g52180 841648 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA O.I. C.G. H.G.
210.0 100.0 31.6 At1g31520 840042 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
173.3 100.0 44.8 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF O.I. C.G. H.G.
146.8 99.9 24.3 At3g27840 822404 RPL12-B (ribosomal protein l12-b) 50S ribosomal protein L12-B O.I. C.G. H.G.
144.1 99.9 30.0 At3g61170 825289 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFB O.I. C.G. H.G.
139.5 99.9 32.8 At1g50470 841469 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
127.1 99.9 22.7 At1g07025 837213 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
125.3 99.9 17.0 At5g38370 833820 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;P O.I. C.G. H.G.
123.1 99.9 17.0 At3g10240 820186 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
119.9 99.9 18.4 At2g36940 818268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
114.3 99.9 46.7 At1g02620 839269 GTP-binding protein (SAR1A) F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF O.I. C.G. H.G.
114.1 99.9 17.5 At1g02580 839422 MEA (MEDEA) Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization O.I. C.G. H.G.
109.6 99.9 13.9 At2g14450 815933 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
97.5 99.9 34.6 At2g05200 3768310 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
96.2 99.9 21.5 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
94.5 99.9 45.1 At2g30790 817630 PSBP-2 (photosystem II subunit P-2) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. O.I. C.G. H.G.
91.0 99.9 12.7 At1g77780 844115 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO O.I. C.G. H.G.
89.3 99.9 24.5 At3g08490 819996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
87.9 99.9 33.2 At1g34440 840347 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
87.4 99.9 22.2 At1g65850 842896 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
87.1 99.9 30.4 At2g42720 818872 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
85.9 99.9 14.1 At4g18420 827572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
85.8 99.9 25.5 At4g17710 827492 HDG4 (HOMEODOMAIN GLABROUS 4) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
84.6 99.9 20.6 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
79.6 99.9 18.5 At3g17180 820975 scpl33 (serine carboxypeptidase-like 33) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
77.9 99.9 3.6 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
74.7 99.9 10.1 At5g32610 833243 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
74.5 99.9 15.5 At5g18880 832006 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
72.7 99.9 23.0 At3g46710 823824 disease resistance protein (CC-NBS-LRR class), putative F:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
72.5 99.9 25.6 At3g28680 822498 prolylcarboxypeptidase-related F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO O.I. C.G. H.G.
72.5 99.9 21.3 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
72.0 99.9 15.8 At4g23960 828496 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
71.4 99.9 17.1 At5g14980 831350 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
71.4 99.9 15.6 At3g20540 821600 POLGAMMA1 (polymerase gamma 1) F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP O.I. C.G. H.G.
70.9 99.9 26.5 At4g13000 826913 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
70.2 99.9 24.1 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF O.I. C.G. H.G.
68.6 99.9 14.6 At4g27220 828830 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA O.I. C.G. H.G.
68.3 99.9 21.1 At4g04120 3770008 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
67.0 99.8 16.5 At3g14030 820617 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
66.9 99.8 13.4 At3g24060 821991 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
64.3 99.8 23.4 At5g20560 832178 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
64.2 99.8 16.5 At2g33720 817937 transcription factor F:transcription factor activity;P:unknown;C:chloroplast;P O.I. C.G. H.G.
64.1 99.8 34.3 At1g67760 843101 ATP binding / protein binding / unfolded protein binding F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP O.I. C.G. H.G.
63.1 99.8 27.9 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. O.I. C.G. H.G.
63.1 99.8 20.6 At2g14640 3767779 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
63.0 99.8 20.5 At5g27510 832811 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
62.9 99.8 13.6 At5g18350 831953 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
61.7 99.8 25.9 At1g77390 844075 CYCA1 core cell cycle genes O.I. C.G. H.G.
61.0 99.8 32.5 At3g51480 824311 ATGLR3.6 (GLUTAMATE RECEPTOR 3.6) member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
60.2 99.8 17.2 At1g01450 837060 protein kinase-related F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
59.7 99.8 16.0 At2g16030 816100 methyltransferase F:methyltransferase activity;P:metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
59.1 99.8 33.7 At3g32270 822998 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
59.1 99.8 28.1 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
58.8 99.8 22.5 At3g44410 3769634 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.0 99.8 71.3 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
57.9 99.8 39.7 At1g16690 838238 transcription factor-related F:transcription factor activity;P:regulation of transcription;C:unknown;MFPO O.I. C.G. H.G.
57.8 99.8 34.5 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
57.5 99.8 19.9 At4g03950 825705 glucose-6-phosphate/phosphate translocator, putative F:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFB O.I. C.G. H.G.
57.2 99.8 33.3 At5g35400 833501 tRNA pseudouridine synthase family protein F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:unknown;BOMPAF O.I. C.G. H.G.
56.8 99.8 12.5 At4g13570 826990 HTA4 Encodes HTA4, a histone H2A protein. O.I. C.G. H.G.
56.7 99.8 43.1 At3g63290 825504 unknown protein F:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOB O.I. C.G. H.G.
55.6 99.8 15.9 At1g71200 843460 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
55.3 99.8 13.5 At2g18970 816414 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
55.1 99.8 25.9 At2g10930 815557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.1 99.8 13.5 At2g40580 818653 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
53.6 99.8 7.0 At2g18320 816347 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
53.4 99.8 14.7 At2g35950 818168 EDA12 (embryo sac development arrest 12) F:molecular_function unknown;P:megagametogenesis;C:unknown;P O.I. C.G. H.G.
52.3 99.8 10.3 At2g19410 816460 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
51.9 99.8 25.4 At5g18180 831936 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, membrane;MFOPBV O.I. C.G. H.G.
51.6 99.8 12.0 At2g13920 3768459 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
51.4 99.8 8.3 At4g02190 828115 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
51.3 99.8 19.0 At1g25460 839132 oxidoreductase family protein F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process, flavonoid biosynthetic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
51.2 99.8 34.5 At4g13260 826956 YUC2 (YUCCA2) F:NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA O.I. C.G. H.G.
51.1 99.8 20.3 At5g25860 832655 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
51.1 99.8 11.3 At5g28560 832953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole O.I. C.G. H.G.
50.9 99.8 12.0 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
50.8 99.8 18.1 At3g58860 825055 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.7 99.8 15.1 At5g37280 833702 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
50.0 99.8 42.9 At2g29370 817486 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
49.4 99.8 20.7 At1g33480 840242 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
49.4 99.8 19.9 At1g49110 841334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.3 99.8 31.2 At4g31710 829299 ATGLR2.4 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
49.0 99.8 35.3 At2g05720 815121 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
49.0 99.8 20.1 At5g41710 3771395 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
48.7 99.8 19.0 At1g36620 3767020 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
48.2 99.8 15.4 At3g26160 822216 CYP71B17 putative cytochrome P450 O.I. C.G. H.G.
48.0 99.8 15.3 At5g11370 831008 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.4 99.8 18.5 At5g66220 836754 chalcone isomerase F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;P O.I. C.G. H.G.
47.3 99.8 30.1 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
47.2 99.8 16.9 At2g04060 814940 beta-galactosidase, putative / lactase, putative F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO O.I. C.G. H.G.
47.2 99.8 9.3 At2g05930 3767925 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
47.0 99.8 18.4 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
47.0 99.8 8.4 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
46.9 99.8 16.2 At5g34790 3771183 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.5 99.8 11.4 At4g36450 829797 ATMPK14 (Mitogen-activated protein kinase 14) member of MAP Kinase O.I. C.G. H.G.
46.4 99.8 17.8 At2g15540 3768274 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.3 99.8 25.8 At5g52975 835376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
45.8 99.8 19.1 At2g33260 817889 tryptophan/tyrosine permease family protein F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
45.7 99.8 15.0 At1g49900 841413 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
318.4	100.0	1084.7	At2g07727	815400	cytochrome b (MTCYB) (COB) (CYTB)	F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA	O.I.	C.G.	H.G.
284.9	100.0	72.8	At1g52180	841648	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA	O.I.	C.G.	H.G.
210.0	100.0	31.6	At1g31520	840042	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
173.3	100.0	44.8	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	O.I.	C.G.	H.G.
146.8	99.9	24.3	At3g27840	822404	RPL12-B (ribosomal protein l12-b)	50S ribosomal protein L12-B	O.I.	C.G.	H.G.
144.1	99.9	30.0	At3g61170	825289	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POMFB	O.I.	C.G.	H.G.
139.5	99.9	32.8	At1g50470	841469	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
127.1	99.9	22.7	At1g07025	837213	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
125.3	99.9	17.0	At5g38370	833820	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;P	O.I.	C.G.	H.G.
123.1	99.9	17.0	At3g10240	820186	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
119.9	99.9	18.4	At2g36940	818268	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
114.3	99.9	46.7	At1g02620	839269	GTP-binding protein (SAR1A)	F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF	O.I.	C.G.	H.G.
114.1	99.9	17.5	At1g02580	839422	MEA (MEDEA)	Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization	O.I.	C.G.	H.G.
109.6	99.9	13.9	At2g14450	815933	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
97.5	99.9	34.6	At2g05200	3768310	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
96.2	99.9	21.5	At5g41640	834166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
94.5	99.9	45.1	At2g30790	817630	PSBP-2 (photosystem II subunit P-2)	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	O.I.	C.G.	H.G.
91.0	99.9	12.7	At1g77780	844115	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
89.3	99.9	24.5	At3g08490	819996	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
87.9	99.9	33.2	At1g34440	840347	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
87.4	99.9	22.2	At1g65850	842896	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
87.1	99.9	30.4	At2g42720	818872	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
85.9	99.9	14.1	At4g18420	827572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
85.8	99.9	25.5	At4g17710	827492	HDG4 (HOMEODOMAIN GLABROUS 4)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
84.6	99.9	20.6	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
79.6	99.9	18.5	At3g17180	820975	scpl33 (serine carboxypeptidase-like 33)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
77.9	99.9	3.6	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
74.7	99.9	10.1	At5g32610	833243	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
74.5	99.9	15.5	At5g18880	832006	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
72.7	99.9	23.0	At3g46710	823824	disease resistance protein (CC-NBS-LRR class), putative	F:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
72.5	99.9	25.6	At3g28680	822498	prolylcarboxypeptidase-related	F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO	O.I.	C.G.	H.G.
72.5	99.9	21.3	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
72.0	99.9	15.8	At4g23960	828496	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
71.4	99.9	17.1	At5g14980	831350	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
71.4	99.9	15.6	At3g20540	821600	POLGAMMA1 (polymerase gamma 1)	F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP	O.I.	C.G.	H.G.
70.9	99.9	26.5	At4g13000	826913	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
70.2	99.9	24.1	At3g22250	821795	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF	O.I.	C.G.	H.G.
68.6	99.9	14.6	At4g27220	828830	disease resistance protein (NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA	O.I.	C.G.	H.G.
68.3	99.9	21.1	At4g04120	3770008	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
67.0	99.8	16.5	At3g14030	820617	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.9	99.8	13.4	At3g24060	821991	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
64.3	99.8	23.4	At5g20560	832178	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
64.2	99.8	16.5	At2g33720	817937	transcription factor	F:transcription factor activity;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
64.1	99.8	34.3	At1g67760	843101	ATP binding / protein binding / unfolded protein binding	F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP	O.I.	C.G.	H.G.
63.1	99.8	27.9	At5g15380	831390	DRM1 (domains rearranged methylase 1)	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	O.I.	C.G.	H.G.
63.1	99.8	20.6	At2g14640	3767779	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
63.0	99.8	20.5	At5g27510	832811	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
62.9	99.8	13.6	At5g18350	831953	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
61.7	99.8	25.9	At1g77390	844075	CYCA1	core cell cycle genes	O.I.	C.G.	H.G.
61.0	99.8	32.5	At3g51480	824311	ATGLR3.6 (GLUTAMATE RECEPTOR 3.6)	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
60.2	99.8	17.2	At1g01450	837060	protein kinase-related	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
59.7	99.8	16.0	At2g16030	816100	methyltransferase	F:methyltransferase activity;P:metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
59.1	99.8	33.7	At3g32270	822998	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
59.1	99.8	28.1	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
58.8	99.8	22.5	At3g44410	3769634	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.0	99.8	71.3	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
57.9	99.8	39.7	At1g16690	838238	transcription factor-related	F:transcription factor activity;P:regulation of transcription;C:unknown;MFPO	O.I.	C.G.	H.G.
57.8	99.8	34.5	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
57.5	99.8	19.9	At4g03950	825705	glucose-6-phosphate/phosphate translocator, putative	F:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFB	O.I.	C.G.	H.G.
57.2	99.8	33.3	At5g35400	833501	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:unknown;BOMPAF	O.I.	C.G.	H.G.
56.8	99.8	12.5	At4g13570	826990	HTA4	Encodes HTA4, a histone H2A protein.	O.I.	C.G.	H.G.
56.7	99.8	43.1	At3g63290	825504	unknown protein	F:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOB	O.I.	C.G.	H.G.
55.6	99.8	15.9	At1g71200	843460	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
55.3	99.8	13.5	At2g18970	816414	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
55.1	99.8	25.9	At2g10930	815557	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.1	99.8	13.5	At2g40580	818653	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
53.6	99.8	7.0	At2g18320	816347	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.4	99.8	14.7	At2g35950	818168	EDA12 (embryo sac development arrest 12)	F:molecular_function unknown;P:megagametogenesis;C:unknown;P	O.I.	C.G.	H.G.
52.3	99.8	10.3	At2g19410	816460	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
51.9	99.8	25.4	At5g18180	831936	Gar1 RNA-binding region family protein	F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, membrane;MFOPBV	O.I.	C.G.	H.G.
51.6	99.8	12.0	At2g13920	3768459	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
51.4	99.8	8.3	At4g02190	828115	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
51.3	99.8	19.0	At1g25460	839132	oxidoreductase family protein	F:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process, flavonoid biosynthetic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
51.2	99.8	34.5	At4g13260	826956	YUC2 (YUCCA2)	F:NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
51.1	99.8	20.3	At5g25860	832655	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
51.1	99.8	11.3	At5g28560	832953	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole	O.I.	C.G.	H.G.
50.9	99.8	12.0	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
50.8	99.8	18.1	At3g58860	825055	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.7	99.8	15.1	At5g37280	833702	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
50.0	99.8	42.9	At2g29370	817486	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
49.4	99.8	20.7	At1g33480	840242	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
49.4	99.8	19.9	At1g49110	841334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.3	99.8	31.2	At4g31710	829299	ATGLR2.4	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
49.0	99.8	35.3	At2g05720	815121	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
49.0	99.8	20.1	At5g41710	3771395	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
48.7	99.8	19.0	At1g36620	3767020	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
48.2	99.8	15.4	At3g26160	822216	CYP71B17	putative cytochrome P450	O.I.	C.G.	H.G.
48.0	99.8	15.3	At5g11370	831008	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.4	99.8	18.5	At5g66220	836754	chalcone isomerase	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;P	O.I.	C.G.	H.G.
47.3	99.8	30.1	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
47.2	99.8	16.9	At2g04060	814940	beta-galactosidase, putative / lactase, putative	F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO	O.I.	C.G.	H.G.
47.2	99.8	9.3	At2g05930	3767925	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
47.0	99.8	18.4	At5g44850	834515	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
47.0	99.8	8.4	At2g35580	818123	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
46.9	99.8	16.2	At5g34790	3771183	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.5	99.8	11.4	At4g36450	829797	ATMPK14 (Mitogen-activated protein kinase 14)	member of MAP Kinase	O.I.	C.G.	H.G.
46.4	99.8	17.8	At2g15540	3768274	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.3	99.8	25.8	At5g52975	835376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
45.8	99.8	19.1	At2g33260	817889	tryptophan/tyrosine permease family protein	F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
45.7	99.8	15.0	At1g49900	841413	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA	O.I.	C.G.	H.G.

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GSM ID	GSM131106
Assay name	Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1
GSE experiment	GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Microarray experiments to specifically-expressed genes

GSM ID GSM131106 Assay name Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

GSM ID GSM131106

Assay name Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)