Microarray experiments to specifically-expressed genes

GSM ID GSM131105
Assay name Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1
GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
354.0100.081.2At1g52180841648major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFAO.I.C.G.H.G.
351.1100.01139.1At2g07727815400cytochrome b (MTCYB) (COB) (CYTB)F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFAO.I.C.G.H.G.
180.0100.037.2At1g50470841469-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
124.399.937.9At4g33925829537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOFO.I.C.G.H.G.
120.199.922.0At3g27840822404RPL12-B (ribosomal protein l12-b)50S ribosomal protein L12-BO.I.C.G.H.G.
119.599.917.7At5g11290831000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
113.599.916.3At3g10240820186F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
101.899.915.9At5g28560832953unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuoleO.I.C.G.H.G.
98.099.926.5At3g20900821639unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
89.699.919.0At1g07025837213mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
87.199.922.2At4g36105829767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFVO.I.C.G.H.G.
85.599.940.4At1g02620839269GTP-binding protein (SAR1A)F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOFO.I.C.G.H.G.
82.299.913.8At4g18420827572transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
77.299.97.4At1g39350840697transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
75.199.914.2At1g02580839422MEA (MEDEA)Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilizationO.I.C.G.H.G.
73.999.917.8At3g17180820975scpl33 (serine carboxypeptidase-like 33)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
72.699.916.7At5g12910831131histone H3, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.C.G.H.G.
72.099.922.0At2g146403767779transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
71.999.918.6At5g41640834166unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
71.599.920.9At2g04060814940beta-galactosidase, putative / lactase, putativeF:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMOO.I.C.G.H.G.
71.399.95.6At1g352003766935-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
70.899.923.8At1g49110841334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.699.924.1At3g22250821795UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOFO.I.C.G.H.G.
70.299.915.6At4g23960828496F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
69.499.9493.7At1g50250841447FTSH1 (FtsH protease 1)encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.O.I.C.G.H.G.
68.799.910.6At3g62440825417F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
67.799.915.2At5g49380834998-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
67.299.818.4At1g01690839243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFAO.I.C.G.H.G.
66.999.823.6At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
65.699.819.9At3g29796822693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.C.G.H.G.
65.299.816.6At2g33720817937transcription factorF:transcription factor activity;P:unknown;C:chloroplast;PO.I.C.G.H.G.
64.599.830.3At4g17130--O.I.C.G.H.G.
64.599.822.4At5g45770834616AtRLP55 (Receptor Like Protein 55)F:protein binding;P:unknown;C:unknown;PMBOFAVO.I.C.G.H.G.
64.299.835.7At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
63.599.813.4At2g36940818268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
62.899.815.5At3g32260822997-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
62.299.834.6At3g32270822998transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
60.999.814.5At5g51420835216long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:unknown;C:unknown;PBOO.I.C.G.H.G.
59.399.823.5At4g38880830043ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3)GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2O.I.C.G.H.G.
58.799.89.4At1g43010840900pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
57.899.816.9At1g49900841413zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVAO.I.C.G.H.G.
55.799.818.8At1g10000837535nucleic acid binding / ribonuclease HF:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PAMOO.I.C.G.H.G.
55.199.821.0At2g33260817889tryptophan/tyrosine permease family proteinF:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFO.I.C.G.H.G.
54.999.819.2At2g05600815109-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
54.999.814.7At2g048203768606transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
54.699.818.8At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.399.821.8At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVO.I.C.G.H.G.
53.799.825.6At2g10930815557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.799.814.0At2g44590819067ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
52.999.816.3At2g04560814998transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBPO.I.C.G.H.G.
52.799.818.7At5g27510832811protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
52.299.825.3At2g052003768310transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
52.099.815.7At5g55360835629long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
51.899.813.7At3g57980824967DNA-binding bromodomain-containing proteinF:DNA binding;P:unknown;C:unknown;MOFPBVAO.I.C.G.H.G.
51.599.815.2At5g37280833702zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
51.499.822.6At4g13000826913protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
50.899.813.0At2g40580818653protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
50.899.810.8At5g38370833820zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;PO.I.C.G.H.G.
50.599.89.6At4g04260825742bromo-adjacent homology (BAH) domain-containing proteinF:DNA binding, zinc ion binding;P:unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
50.099.815.7At1g01450837060protein kinase-relatedF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
49.999.818.5At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBO.I.C.G.H.G.
49.899.819.4At4g17710827492HDG4 (HOMEODOMAIN GLABROUS 4)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
49.699.811.8At5g28860833005transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
48.799.819.2At5g48420834897unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.599.824.7At1g34440840347unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.499.815.8At5g46360834679KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.O.I.C.G.H.G.
48.099.815.6At1g528108417142-oxoglutarate-dependent dioxygenase-relatedF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
47.599.811.8At3g19085821443-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.499.818.8At1g366203767020transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
47.499.818.1At1g09000837421ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1)NPK1-related protein kinase 1SO.I.C.G.H.G.
47.299.864.3At1g61667842463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
46.899.829.3At1g67760843101ATP binding / protein binding / unfolded protein bindingF:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFPO.I.C.G.H.G.
46.599.87.1At1g36100840515myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.099.821.8At5g36270833624-pseudogene of dehydroascorbate reductaseO.I.C.G.H.G.
46.099.816.6At3g44180823540syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
45.999.831.4At2g30790817630PSBP-2 (photosystem II subunit P-2)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.O.I.C.G.H.G.
45.899.814.0At2g16030816100methyltransferaseF:methyltransferase activity;P:metabolic process;C:endomembrane system;POO.I.C.G.H.G.
45.199.814.6At1g31520840042unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
44.699.821.7At2g42720818872F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
44.399.812.0At5g18880832006-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.699.814.2At3g42700823290transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
43.499.818.8At4g35590829711RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;POMBFAO.I.C.G.H.G.
43.399.89.5At1g50530841475-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.099.819.5At1g63730842677disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response;C:intrinsic to membrane;PMBOAFO.I.C.G.H.G.
42.999.893.2At3g60540825225sec61beta family proteinF:protein transporter activity;P:protein transport;C:unknown;MFPOO.I.C.G.H.G.
42.499.819.6At3g28680822498prolylcarboxypeptidase-relatedF:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPOO.I.C.G.H.G.
42.499.811.2At3g06710819856-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
42.299.824.4At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.299.814.3At5g01060831916protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
41.899.810.8At4g36450829797ATMPK14 (Mitogen-activated protein kinase 14)member of MAP KinaseO.I.C.G.H.G.
41.599.811.3At5g29090833048transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
41.399.818.4At4g106903770312transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
40.899.821.0At2g24840817021AGL61 (AGAMOUS-LIKE 61)Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.O.I.C.G.H.G.
40.399.822.3At5g15380831390DRM1 (domains rearranged methylase 1)Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.O.I.C.G.H.G.
40.099.820.2At4g174503770187transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
39.999.823.9At2g31050817657plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POAO.I.C.G.H.G.
39.899.828.7At5g57720835879transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFMO.I.C.G.H.G.
39.899.818.2At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)O.I.C.G.H.G.
39.899.818.1At3g58230824992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
39.799.826.1At5g45090834541AtPP2-A7 (Phloem protein 2-A7)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.



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