CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131104

Assay name Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
454.4 100.0 92.0 At1g52180 841648 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA O.I. C.G. H.G.
245.4 100.0 952.3 At2g07727 815400 cytochrome b (MTCYB) (COB) (CYTB) F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA O.I. C.G. H.G.
123.6 99.9 48.5 At1g02620 839269 GTP-binding protein (SAR1A) F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF O.I. C.G. H.G.
107.6 99.9 614.7 At1g50250 841447 FTSH1 (FtsH protease 1) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. O.I. C.G. H.G.
93.8 99.9 33.0 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF O.I. C.G. H.G.
86.5 99.9 19.2 At2g33720 817937 transcription factor F:transcription factor activity;P:unknown;C:chloroplast;P O.I. C.G. H.G.
66.3 99.8 14.2 At1g56380 842091 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
65.7 99.8 23.3 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF O.I. C.G. H.G.
51.9 99.8 23.3 At4g30590 829182 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
50.2 99.8 21.0 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV O.I. C.G. H.G.
48.3 99.8 65.1 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
47.8 99.8 10.6 At3g10240 820186 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.9 99.8 29.9 At1g28220 839716 ATPUP3 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
40.6 99.8 18.0 At2g33260 817889 tryptophan/tyrosine permease family protein F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
40.0 99.8 10.7 At1g06310 837141 ACX6 (ACYL-COA OXIDASE 6) Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo. O.I. C.G. H.G.
39.6 99.8 19.3 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.2 99.8 11.6 At4g23960 828496 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.0 99.8 13.8 At5g28310 832915 oxidoreductase-related F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
38.6 99.8 10.4 At2g36940 818268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.2 99.8 13.6 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.4 99.7 9.3 At4g18420 827572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.8 99.7 21.3 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. O.I. C.G. H.G.
36.6 99.7 8.0 At2g14450 815933 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
35.1 99.7 22.3 At3g43900 823506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.0 99.7 16.3 At4g17710 827492 HDG4 (HOMEODOMAIN GLABROUS 4) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
34.0 99.7 17.0 At3g09310 820087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPVM O.I. C.G. H.G.
33.9 99.7 20.6 At1g34440 840347 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.4 99.7 24.0 At3g51480 824311 ATGLR3.6 (GLUTAMATE RECEPTOR 3.6) member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
33.4 99.7 15.5 At5g27530 832813 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMVA O.I. C.G. H.G.
33.2 99.7 11.6 At3g27840 822404 RPL12-B (ribosomal protein l12-b) 50S ribosomal protein L12-B O.I. C.G. H.G.
33.1 99.7 29.0 At2g05720 815121 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
33.0 99.7 17.3 At3g28680 822498 prolylcarboxypeptidase-related F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO O.I. C.G. H.G.
32.6 99.7 25.4 At4g31710 829299 ATGLR2.4 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
32.3 99.7 11.7 At4g20080 827753 C2 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
32.0 99.7 12.5 At1g37000 840610 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
32.0 99.7 7.9 At1g44740 841038 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
31.7 99.7 9.3 At1g15900 838160 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
31.4 99.7 71.7 At2g29720 817522 CTF2B Encodes CTF2B. O.I. C.G. H.G.
31.4 99.7 10.4 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
31.4 99.7 6.6 At2g36920 818266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
31.2 99.7 881.1 At5g19140 832034 AILP1 F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV O.I. C.G. H.G.
30.9 99.7 9.9 At5g22960 832360 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
30.8 99.7 10.8 At3g31320 822882 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.7 99.7 11.1 At1g07025 837213 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
30.5 99.7 12.4 At2g27520 817298 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
30.3 99.7 17.4 At3g20700 821617 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.0 99.7 12.3 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
29.7 99.7 25.3 At2g30790 817630 PSBP-2 (photosystem II subunit P-2) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. O.I. C.G. H.G.
29.7 99.7 11.1 At4g21500 828235 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
29.6 99.7 2.2 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.5 99.7 93.7 At3g01130 821228 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.4 99.7 10.6 At5g12910 831131 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.
29.3 99.7 12.0 At1g49900 841413 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA O.I. C.G. H.G.
29.2 99.7 400.6 At1g04820 839405 TUA4 Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. O.I. C.G. H.G.
29.2 99.7 13.8 At4g04120 3770008 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.0 99.7 9.0 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
28.9 99.7 9.5 At4g27220 828830 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA O.I. C.G. H.G.
28.7 99.7 20.2 At4g17130 - - O.I. C.G. H.G.
28.7 99.7 19.3 At5g02640 831166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.6 99.7 17.8 At5g66710 836804 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
28.5 99.7 9.9 At3g20540 821600 POLGAMMA1 (polymerase gamma 1) F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP O.I. C.G. H.G.
28.3 99.7 36.8 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
28.1 99.7 23.6 At1g53640 841800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBV O.I. C.G. H.G.
28.0 99.7 6.5 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
27.7 99.7 12.5 At3g52510 824416 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
27.6 99.7 16.6 At4g13000 826913 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
27.4 99.7 15.9 At3g46360 823782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 8.7 At4g13570 826990 HTA4 Encodes HTA4, a histone H2A protein. O.I. C.G. H.G.
27.0 99.7 17.0 At2g24840 817021 AGL61 (AGAMOUS-LIKE 61) Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell. O.I. C.G. H.G.
26.9 99.7 13.6 At2g36980 818272 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFAB O.I. C.G. H.G.
26.8 99.7 11.5 At1g01450 837060 protein kinase-related F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
26.7 99.7 10.7 At2g16030 816100 methyltransferase F:methyltransferase activity;P:metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
26.7 99.7 9.8 At2g44590 819067 ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D) F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
26.5 99.7 8.4 At3g24060 821991 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.4 99.7 11.5 At2g04560 814998 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBP O.I. C.G. H.G.
26.1 99.7 23.0 At2g23660 816897 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) F:unknown;P:biological_process unknown;C:unknown;PMBOF O.I. C.G. H.G.
26.1 99.7 21.9 At1g67760 843101 ATP binding / protein binding / unfolded protein binding F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP O.I. C.G. H.G.
26.0 99.7 9.5 At4g27930 828906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
25.9 99.7 14.4 At2g15500 816042 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM O.I. C.G. H.G.
25.5 99.7 8.7 At4g05280 825876 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
25.4 99.6 22.9 At5g57720 835879 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM O.I. C.G. H.G.
25.3 99.6 4.8 At3g44080 823526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
25.2 99.6 33.5 At3g14130 820630 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA O.I. C.G. H.G.
25.2 99.6 12.6 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
25.1 99.6 9.9 At3g01990 821217 ACR6 Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding. O.I. C.G. H.G.
24.8 99.6 14.3 At3g14320 820652 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
24.7 99.6 9.8 At4g19095 827648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
24.6 99.6 32.3 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. O.I. C.G. H.G.
24.6 99.6 12.8 At2g14640 3767779 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.6 99.6 10.6 At1g71200 843460 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
24.4 99.6 15.3 At5g47460 834796 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
24.3 99.6 13.8 At3g16280 820874 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
24.3 99.6 11.1 At1g78840 844221 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
24.2 99.6 72.2 At4g20070 827752 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis. O.I. C.G. H.G.
24.2 99.6 18.6 At2g31050 817657 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POA O.I. C.G. H.G.
24.1 99.6 22.2 At1g01225 839358 NC domain-containing protein-related F:unknown;P:unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
24.0 99.6 10.9 At5g66260 836758 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
24.0 99.6 8.8 At5g18880 832006 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.9 99.6 88.0 At5g59300 836048 UBC7 (UBIQUITIN CARRIER PROTEIN 7) ubiquitin conjugating enzyme E2 O.I. C.G. H.G.
23.9 99.6 7.1 At4g20770 827825 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
454.4	100.0	92.0	At1g52180	841648	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFA	O.I.	C.G.	H.G.
245.4	100.0	952.3	At2g07727	815400	cytochrome b (MTCYB) (COB) (CYTB)	F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA	O.I.	C.G.	H.G.
123.6	99.9	48.5	At1g02620	839269	GTP-binding protein (SAR1A)	F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOF	O.I.	C.G.	H.G.
107.6	99.9	614.7	At1g50250	841447	FTSH1 (FtsH protease 1)	encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.	O.I.	C.G.	H.G.
93.8	99.9	33.0	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	O.I.	C.G.	H.G.
86.5	99.9	19.2	At2g33720	817937	transcription factor	F:transcription factor activity;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
66.3	99.8	14.2	At1g56380	842091	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
65.7	99.8	23.3	At3g22250	821795	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF	O.I.	C.G.	H.G.
51.9	99.8	23.3	At4g30590	829182	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
50.2	99.8	21.0	At4g17580	827475	Bax inhibitor-1 family protein / BI-1 family protein	F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV	O.I.	C.G.	H.G.
48.3	99.8	65.1	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
47.8	99.8	10.6	At3g10240	820186	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.9	99.8	29.9	At1g28220	839716	ATPUP3	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
40.6	99.8	18.0	At2g33260	817889	tryptophan/tyrosine permease family protein	F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
40.0	99.8	10.7	At1g06310	837141	ACX6 (ACYL-COA OXIDASE 6)	Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.	O.I.	C.G.	H.G.
39.6	99.8	19.3	At2g35460	818111	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.2	99.8	11.6	At4g23960	828496	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.0	99.8	13.8	At5g28310	832915	oxidoreductase-related	F:oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding;P:metabolic process;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
38.6	99.8	10.4	At2g36940	818268	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.2	99.8	13.6	At5g41640	834166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.4	99.7	9.3	At4g18420	827572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.8	99.7	21.3	At5g15380	831390	DRM1 (domains rearranged methylase 1)	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	O.I.	C.G.	H.G.
36.6	99.7	8.0	At2g14450	815933	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
35.1	99.7	22.3	At3g43900	823506	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.0	99.7	16.3	At4g17710	827492	HDG4 (HOMEODOMAIN GLABROUS 4)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
34.0	99.7	17.0	At3g09310	820087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPVM	O.I.	C.G.	H.G.
33.9	99.7	20.6	At1g34440	840347	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.4	99.7	24.0	At3g51480	824311	ATGLR3.6 (GLUTAMATE RECEPTOR 3.6)	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
33.4	99.7	15.5	At5g27530	832813	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMVA	O.I.	C.G.	H.G.
33.2	99.7	11.6	At3g27840	822404	RPL12-B (ribosomal protein l12-b)	50S ribosomal protein L12-B	O.I.	C.G.	H.G.
33.1	99.7	29.0	At2g05720	815121	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
33.0	99.7	17.3	At3g28680	822498	prolylcarboxypeptidase-related	F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO	O.I.	C.G.	H.G.
32.6	99.7	25.4	At4g31710	829299	ATGLR2.4	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
32.3	99.7	11.7	At4g20080	827753	C2 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
32.0	99.7	12.5	At1g37000	840610	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
32.0	99.7	7.9	At1g44740	841038	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
31.7	99.7	9.3	At1g15900	838160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
31.4	99.7	71.7	At2g29720	817522	CTF2B	Encodes CTF2B.	O.I.	C.G.	H.G.
31.4	99.7	10.4	At5g51420	835216	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	F:acyltransferase activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
31.4	99.7	6.6	At2g36920	818266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
31.2	99.7	881.1	At5g19140	832034	AILP1	F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV	O.I.	C.G.	H.G.
30.9	99.7	9.9	At5g22960	832360	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
30.8	99.7	10.8	At3g31320	822882	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.7	99.7	11.1	At1g07025	837213	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
30.5	99.7	12.4	At2g27520	817298	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
30.3	99.7	17.4	At3g20700	821617	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.0	99.7	12.3	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
29.7	99.7	25.3	At2g30790	817630	PSBP-2 (photosystem II subunit P-2)	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	O.I.	C.G.	H.G.
29.7	99.7	11.1	At4g21500	828235	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
29.6	99.7	2.2	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.5	99.7	93.7	At3g01130	821228	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.4	99.7	10.6	At5g12910	831131	histone H3, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.
29.3	99.7	12.0	At1g49900	841413	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA	O.I.	C.G.	H.G.
29.2	99.7	400.6	At1g04820	839405	TUA4	Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.	O.I.	C.G.	H.G.
29.2	99.7	13.8	At4g04120	3770008	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.0	99.7	9.0	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
28.9	99.7	9.5	At4g27220	828830	disease resistance protein (NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA	O.I.	C.G.	H.G.
28.7	99.7	20.2	At4g17130		-	-	O.I.	C.G.	H.G.
28.7	99.7	19.3	At5g02640	831166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.6	99.7	17.8	At5g66710	836804	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
28.5	99.7	9.9	At3g20540	821600	POLGAMMA1 (polymerase gamma 1)	F:3'-5' exonuclease activity, DNA binding, DNA-directed DNA polymerase activity, nucleic acid binding;P:DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion, chloroplast, nucleoid;OBVMP	O.I.	C.G.	H.G.
28.3	99.7	36.8	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
28.1	99.7	23.6	At1g53640	841800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBV	O.I.	C.G.	H.G.
28.0	99.7	6.5	At2g35580	818123	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
27.7	99.7	12.5	At3g52510	824416	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
27.6	99.7	16.6	At4g13000	826913	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
27.4	99.7	15.9	At3g46360	823782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	8.7	At4g13570	826990	HTA4	Encodes HTA4, a histone H2A protein.	O.I.	C.G.	H.G.
27.0	99.7	17.0	At2g24840	817021	AGL61 (AGAMOUS-LIKE 61)	Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.	O.I.	C.G.	H.G.
26.9	99.7	13.6	At2g36980	818272	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFAB	O.I.	C.G.	H.G.
26.8	99.7	11.5	At1g01450	837060	protein kinase-related	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
26.7	99.7	10.7	At2g16030	816100	methyltransferase	F:methyltransferase activity;P:metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
26.7	99.7	9.8	At2g44590	819067	ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
26.5	99.7	8.4	At3g24060	821991	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.4	99.7	11.5	At2g04560	814998	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
26.1	99.7	23.0	At2g23660	816897	LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)	F:unknown;P:biological_process unknown;C:unknown;PMBOF	O.I.	C.G.	H.G.
26.1	99.7	21.9	At1g67760	843101	ATP binding / protein binding / unfolded protein binding	F:unfolded protein binding, protein binding, ATP binding;P:response to salt stress;C:cellular_component unknown;AMOFP	O.I.	C.G.	H.G.
26.0	99.7	9.5	At4g27930	828906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
25.9	99.7	14.4	At2g15500	816042	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	C.G.	H.G.
25.5	99.7	8.7	At4g05280	825876	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
25.4	99.6	22.9	At5g57720	835879	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
25.3	99.6	4.8	At3g44080	823526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
25.2	99.6	33.5	At3g14130	820630	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPA	O.I.	C.G.	H.G.
25.2	99.6	12.6	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
25.1	99.6	9.9	At3g01990	821217	ACR6	Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.	O.I.	C.G.	H.G.
24.8	99.6	14.3	At3g14320	820652	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
24.7	99.6	9.8	At4g19095	827648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
24.6	99.6	32.3	At3g21500	821704	1-deoxy-D-xylulose-5-phosphate synthase	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	O.I.	C.G.	H.G.
24.6	99.6	12.8	At2g14640	3767779	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.6	99.6	10.6	At1g71200	843460	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
24.4	99.6	15.3	At5g47460	834796	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
24.3	99.6	13.8	At3g16280	820874	DNA binding / transcription factor	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
24.3	99.6	11.1	At1g78840	844221	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.2	99.6	72.2	At4g20070	827752	ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)	The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.	O.I.	C.G.	H.G.
24.2	99.6	18.6	At2g31050	817657	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POA	O.I.	C.G.	H.G.
24.1	99.6	22.2	At1g01225	839358	NC domain-containing protein-related	F:unknown;P:unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
24.0	99.6	10.9	At5g66260	836758	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
24.0	99.6	8.8	At5g18880	832006	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.9	99.6	88.0	At5g59300	836048	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	ubiquitin conjugating enzyme E2	O.I.	C.G.	H.G.
23.9	99.6	7.1	At4g20770	827825	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.

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GSM ID	GSM131104
Assay name	Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1
GSE experiment	GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Microarray experiments to specifically-expressed genes

GSM ID GSM131104 Assay name Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1 GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

GSM ID GSM131104

Assay name Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH1

GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)