Microarray experiments to specifically-expressed genes

GSM ID GSM131103
Assay name Broadley_1-1_A1-Bo+P-nutrient-replete_Rep1_ATH1
GSE experiment GSE5614: Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
353.4100.01142.9At2g07727815400cytochrome b (MTCYB) (COB) (CYTB)F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFAO.I.C.G.H.G.
157.799.954.2At1g52180841648major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:endomembrane system, membrane;PMBOFAO.I.C.G.H.G.
120.599.9650.5At1g50250841447FTSH1 (FtsH protease 1)encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.O.I.C.G.H.G.
79.199.938.8At1g02620839269GTP-binding protein (SAR1A)F:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MPOFO.I.C.G.H.G.
77.099.925.2At3g22250821795UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOFO.I.C.G.H.G.
76.499.9128.3At4g20070827752ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.O.I.C.G.H.G.
76.499.929.7At4g33925829537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOFO.I.C.G.H.G.
63.799.882.6At2g28305817376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
51.599.870.6At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
50.099.87.3At4g05030825845heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:mitochondrion;PO.I.C.G.H.G.
47.299.815.1At5g41640834166unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.999.814.1At2g33720817937transcription factorF:transcription factor activity;P:unknown;C:chloroplast;PO.I.C.G.H.G.
46.599.8111.4At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
43.799.819.9At3g28680822498prolylcarboxypeptidase-relatedF:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPOO.I.C.G.H.G.
42.799.810.7At1g02580839422MEA (MEDEA)Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilizationO.I.C.G.H.G.
42.499.810.0At3g10240820186F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.399.86.7At1g36100840515myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.399.8274.6At1g18730838455NDF6 (NDH DEPENDENT FLOW 6)likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.C.G.H.G.
37.699.79.9At5g11290831000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.499.759.1At1g11720837716ATSS3 (starch synthase 3)Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).O.I.C.G.H.G.
35.899.781.3At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
35.599.716.0At3g20900821639unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
35.099.756.4At2g0772581539860S ribosomal protein L5 (RPL5)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;POO.I.C.G.H.G.
34.499.717.3At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVO.I.C.G.H.G.
34.399.710.0At5g18350831953ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptorF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
33.299.725.6At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
32.499.738.0At3g14130820630(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:unknown;OBFMPAO.I.C.G.H.G.
31.599.771.9At2g29720817522CTF2BEncodes CTF2B.O.I.C.G.H.G.
31.199.714.7At2g36980818272pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFABO.I.C.G.H.G.
31.099.712.1At1g31520840042unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.899.712.5At3g13170820506ATSPO11-1Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.O.I.C.G.H.G.
30.599.725.6At2g30790817630PSBP-2 (photosystem II subunit P-2)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.O.I.C.G.H.G.
29.999.711.0At3g27840822404RPL12-B (ribosomal protein l12-b)50S ribosomal protein L12-BO.I.C.G.H.G.
29.499.7854.5At5g19140832034AILP1F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAVO.I.C.G.H.G.
29.399.75.5At4g121803769991transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
29.299.723.7At3g32270822998transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
28.999.726.0At4g13260826956YUC2 (YUCCA2)F:NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity;P:auxin biosynthetic process;C:unknown;BOFMPAO.I.C.G.H.G.
28.299.764.7At4g04955825836ATALN (Arabidopsis allantoinase)Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied.O.I.C.G.H.G.
28.299.716.7At4g04180825733AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion;BOMFPAVO.I.C.G.H.G.
27.899.724.6At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
27.499.711.6At1g49900841413zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVAO.I.C.G.H.G.
27.399.7125.8At5g43010834316RPT4A26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,O.I.C.G.H.G.
27.199.713.0At3g61170825289pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBO.I.C.G.H.G.
26.199.731.0At2g29370817486tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
25.999.710.0At5g35300833484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
25.899.716.1At1g23420838950INO (INNER NO OUTER)Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.O.I.C.G.H.G.
25.699.78.0At5g28560832953unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuoleO.I.C.G.H.G.
25.399.645.7At2g35450818110catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMFO.I.C.G.H.G.
25.299.614.1At4g040003770309transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.999.617.6At2g188203768266transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.899.69.7At3g31320822882transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.699.6189.5At2g077833768188-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.699.615.6At5g36870833654ATGSL09 (glucan synthase-like 9)encodes a gene similar to callose synthaseO.I.C.G.H.G.
24.599.68.3At2g04440814984NUDIX/mutT hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;PMOBO.I.C.G.H.G.
24.499.618.6At4g17130--O.I.C.G.H.G.
23.999.611.6At4g36105829767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFVO.I.C.G.H.G.
23.899.645.6At1g61667842463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
23.699.625.7At4g16570827358PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7)F:methyltransferase activity;P:protein amino acid methylation;C:chloroplast;MFOPBAO.I.C.G.H.G.
23.499.68.9At5g49380834998-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
23.199.68.9At4g23960828496F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.199.62.9At2g122303768490-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
23.099.611.0At3g57130824880BOP1 (BLADE ON PETIOLE 1)ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones.O.I.C.G.H.G.
23.099.69.4At2g39620818545pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.C.G.H.G.
22.899.68.9At5g51420835216long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:unknown;C:unknown;PBOO.I.C.G.H.G.
22.799.613.5At2g33260817889tryptophan/tyrosine permease family proteinF:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFO.I.C.G.H.G.
22.699.615.0At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.599.616.6At2g052003768310transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.499.68.4At5g22960832360serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
21.999.69.7At3g17180820975scpl33 (serine carboxypeptidase-like 33)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
21.899.612.9At1g50470841469-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.899.67.6At3g24060821991self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.799.623.3At5g19830832103aminoacyl-tRNA hydrolaseF:aminoacyl-tRNA hydrolase activity;P:translation;C:mitochondrion;BOPFMO.I.C.G.H.G.
21.599.637.4At1g32290840121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
21.499.612.3At1g25460839132oxidoreductase family proteinF:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process, flavonoid biosynthetic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
21.399.610.4At2g04560814998transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:lipid A biosynthetic process;C:cellular_component unknown;OBPO.I.C.G.H.G.
21.299.612.1At2g204603767852transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
21.299.610.2At1g01450837060protein kinase-relatedF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
21.299.68.4At2g18970816414unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
21.299.67.8At1g06310837141ACX6 (ACYL-COA OXIDASE 6)Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.O.I.C.G.H.G.
21.199.613.6At4g29250829046transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
21.099.618.6At5g03800831717EMB175 (EMBRYO DEFECTIVE 175)Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.O.I.C.G.H.G.
20.999.626.2At3g63290825504unknown proteinF:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOBO.I.C.G.H.G.
20.999.625.3At1g30220839902INT2 (INOSITOL TRANSPORTER 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
20.899.610.9At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
20.899.64.9At1g60320842327Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO.I.C.G.H.G.
20.799.611.4At2g16410816139transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
20.599.6204.6At3g48420824000haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAVO.I.C.G.H.G.
20.599.661.8At5g49840835047ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein bindingF:protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein transport;C:unknown;BOMFPAO.I.C.G.H.G.
20.599.623.6At1g16690838238transcription factor-relatedF:transcription factor activity;P:regulation of transcription;C:unknown;MFPOO.I.C.G.H.G.
20.499.611.7At2g146403767779transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
20.499.611.1At3g29796822693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.C.G.H.G.
20.299.631.1At5g57590835863BIO1 (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.O.I.C.G.H.G.
20.299.67.4At4g13570826990HTA4Encodes HTA4, a histone H2A protein.O.I.C.G.H.G.
20.199.616.9At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.999.615.8At1g34440840347unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.999.610.2At2g31460817704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.899.620.0At2g23660816897LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)F:unknown;P:biological_process unknown;C:unknown;PMBOFO.I.C.G.H.G.
19.899.620.0At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.C.G.H.G.
19.799.619.7At1g53640841800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVO.I.C.G.H.G.
19.699.68.9At1g07025837213mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.



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