CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM131073

Assay name Edwards_1-8_54hr_Rep1_ATH1

GSE experiment GSE5612: Circadian expression of genes: modelling the Arabidopsis circadian clock

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
18.8 99.5 73.6 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
16.5 99.5 79.0 At3g21370 821691 BGLU19 (BETA GLUCOSIDASE 19) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
13.9 99.4 27.4 At5g60120 836134 TOE2 F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
13.3 99.4 78.0 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
11.5 99.3 6.1 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
11.1 99.2 50.1 At1g06080 837117 ADS1 (DELTA 9 DESATURASE 1) homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. O.I. C.G. H.G.
10.0 99.2 52.2 At1g52000 841629 jacalin lectin family protein F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
9.7 99.1 53.4 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
9.6 99.1 5.8 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
9.1 99.1 33.5 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
9.1 99.1 20.4 At5g53500 835432 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
9.0 99.1 107.5 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB O.I. C.G. H.G.
9.0 99.1 37.2 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
8.9 99.0 110.0 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
8.8 99.0 21.4 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). O.I. C.G. H.G.
8.8 99.0 6.2 At2g22200 816754 AP2 domain-containing transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.

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