Microarray experiments to specifically-expressed genes

GSM ID GSM128808
Assay name Zarka_3-4_MT-E2A_Rep1_ATH1
GSE experiment GSE5536: Response to CBF2 expression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
117.899.9231.7At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
63.099.820.2At3g62740825449BGLU7 (BETA GLUCOSIDASE 7)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
54.799.823.4At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
54.399.834.1At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
44.299.8127.1At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
42.899.861.0At3g17130820970invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
34.399.7238.0At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
31.199.7124.9At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
30.699.7361.7At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFO.I.C.G.H.G.
30.399.7650.0At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
25.799.762.1At5g50720835144ATHVA22EEncodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.O.I.C.G.H.G.
22.999.6183.4At1g08570837379ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.O.I.C.G.H.G.
20.899.6262.7At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
18.599.549.8At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
17.499.5396.6At2g28900817439ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.O.I.C.G.H.G.
17.199.5415.4At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
17.099.525.5At1g27910839684PUB45 (PLANT U-BOX 45)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
16.799.5156.7At4g24960828598ATHVA22DHomologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.O.I.C.G.H.G.
15.899.55.7At5g58780835992dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
15.699.5953.6At5g15960831453KIN1cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.O.I.C.G.H.G.
14.199.416.1At1g01420837503UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.599.4316.0At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
12.899.3598.2At1g20440838632COR47 (COLD-REGULATED 47)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.O.I.C.G.H.G.
12.499.350.7At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
12.399.372.5At2g21530816692forkhead-associated domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAMO.I.C.G.H.G.
10.899.246.2At2g35960818169NHL12Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.O.I.C.G.H.G.
10.699.242.1At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
10.199.224.1At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.099.297.3At5g24570832528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.099.292.7At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
9.899.199.0At1g47710841182serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAFO.I.C.G.H.G.
9.499.151.7At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
9.399.135.9At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
9.199.1325.7At1g01470837071LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.O.I.C.G.H.G.
9.199.18.5At5g62100836330ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.C.G.H.G.
8.899.0194.3At4g27520828861plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVAO.I.C.G.H.G.
8.799.023.5At3g09540820111pectate lyase family proteinF:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFOO.I.C.G.H.G.
8.699.0397.1At5g62350836356invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.



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