CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM128802

Assay name Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1

GSE experiment GSE5535: Response to cold, soil grown plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
174.4 100.0 295.8 At1g09350 837457 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
48.0 99.8 519.3 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
43.9 99.8 29.0 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
38.5 99.8 71.9 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
30.4 99.7 360.1 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
28.0 99.7 89.3 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
27.8 99.7 528.8 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. C.G. H.G.
27.5 99.7 167.6 At1g62570 842554 FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
27.4 99.7 100.2 At1g16850 838256 unknown protein F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
26.6 99.7 442.9 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
23.0 99.6 261.8 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). O.I. C.G. H.G.
20.9 99.6 299.0 At4g27520 828861 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA O.I. C.G. H.G.
20.9 99.6 56.3 At1g78070 844142 - F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO O.I. C.G. H.G.
19.3 99.6 231.3 At2g39800 818566 P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner. O.I. C.G. H.G.
17.5 99.5 39.1 At3g17130 820970 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
17.1 99.5 58.1 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. C.G. H.G.
17.0 99.5 82.5 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
16.1 99.5 473.9 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
15.9 99.5 430.7 At1g01470 837071 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. O.I. C.G. H.G.
15.7 99.5 50.5 At4g17550 827470 transporter-related F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA O.I. C.G. H.G.
15.3 99.4 96.6 At5g57110 835815 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane. O.I. C.G. H.G.
14.7 99.4 106.2 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
14.6 99.4 364.1 At2g28900 817439 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. O.I. C.G. H.G.
14.6 99.4 72.6 At5g42570 834264 - F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB O.I. C.G. H.G.
14.6 99.4 55.2 At4g32190 829352 centromeric protein-related F:unknown;P:unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
14.2 99.4 119.1 At1g47710 841182 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF O.I. C.G. H.G.
13.9 99.4 47.7 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
13.5 99.4 60.3 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. O.I. C.G. H.G.
13.4 99.4 612.2 At1g20440 838632 COR47 (COLD-REGULATED 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. O.I. C.G. H.G.
12.9 99.3 682.1 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
12.5 99.3 84.4 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
11.9 99.3 140.1 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
11.8 99.3 42.6 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.6 99.3 252.7 At2g31360 817694 ADS2 (16:0Delta9 Arabidopsis desaturase 2) homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature. O.I. C.G. H.G.
11.3 99.3 25.0 At1g27200 839609 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFM O.I. C.G. H.G.
11.1 99.2 15.2 At1g46768 841117 RAP2.1 (related to AP2 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. O.I. C.G. H.G.
10.8 99.2 73.2 At4g27560 828865 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
10.6 99.2 105.4 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete O.I. C.G. H.G.
10.4 99.2 32.0 At3g14890 820718 phosphoesterase F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
10.0 99.2 121.3 At4g24960 828598 ATHVA22D Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development. O.I. C.G. H.G.
9.8 99.1 49.6 At1g68500 843179 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.4 99.1 37.8 At4g34740 829626 ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. O.I. C.G. H.G.
9.2 99.1 24.1 At3g09540 820111 pectate lyase family protein F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO O.I. C.G. H.G.
9.1 99.1 14.0 At3g05660 819733 AtRLP33 (Receptor Like Protein 33) F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAV O.I. C.G. H.G.
8.9 99.0 347.9 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA O.I. C.G. H.G.
8.8 99.0 10.3 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
8.6 99.0 175.9 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
8.6 99.0** 38.8 At2g41900 818790 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
174.4	100.0	295.8	At1g09350	837457	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
48.0	99.8	519.3	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
43.9	99.8	29.0	At3g55580	824723	regulator of chromosome condensation (RCC1) family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
38.5	99.8	71.9	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
30.4	99.7	360.1	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
28.0	99.7	89.3	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
27.8	99.7	528.8	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	H.G.
27.5	99.7	167.6	At1g62570	842554	FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
27.4	99.7	100.2	At1g16850	838256	unknown protein	F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
26.6	99.7	442.9	At5g52310	835307	LTI78 (LOW-TEMPERATURE-INDUCED 78)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression	O.I.	C.G.	H.G.
23.0	99.6	261.8	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	O.I.	C.G.	H.G.
20.9	99.6	299.0	At4g27520	828861	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:in 6 components;MOFBPVA	O.I.	C.G.	H.G.
20.9	99.6	56.3	At1g78070	844142	-	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO	O.I.	C.G.	H.G.
19.3	99.6	231.3	At2g39800	818566	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.	O.I.	C.G.	H.G.
17.5	99.5	39.1	At3g17130	820970	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.1	99.5	58.1	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	C.G.	H.G.
17.0	99.5	82.5	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
16.1	99.5	473.9	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
15.9	99.5	430.7	At1g01470	837071	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.	O.I.	C.G.	H.G.
15.7	99.5	50.5	At4g17550	827470	transporter-related	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA	O.I.	C.G.	H.G.
15.3	99.4	96.6	At5g57110	835815	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.	O.I.	C.G.	H.G.
14.7	99.4	106.2	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
14.6	99.4	364.1	At2g28900	817439	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.	O.I.	C.G.	H.G.
14.6	99.4	72.6	At5g42570	834264	-	F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB	O.I.	C.G.	H.G.
14.6	99.4	55.2	At4g32190	829352	centromeric protein-related	F:unknown;P:unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
14.2	99.4	119.1	At1g47710	841182	serpin, putative / serine protease inhibitor, putative	F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF	O.I.	C.G.	H.G.
13.9	99.4	47.7	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
13.5	99.4	60.3	At5g24470	832518	APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.	O.I.	C.G.	H.G.
13.4	99.4	612.2	At1g20440	838632	COR47 (COLD-REGULATED 47)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.	O.I.	C.G.	H.G.
12.9	99.3	682.1	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
12.5	99.3	84.4	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
11.9	99.3	140.1	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
11.8	99.3	42.6	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.6	99.3	252.7	At2g31360	817694	ADS2 (16:0Delta9 Arabidopsis desaturase 2)	homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.	O.I.	C.G.	H.G.
11.3	99.3	25.0	At1g27200	839609	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOFM	O.I.	C.G.	H.G.
11.1	99.2	15.2	At1g46768	841117	RAP2.1 (related to AP2 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
10.8	99.2	73.2	At4g27560	828865	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV	O.I.	C.G.	H.G.
10.6	99.2	105.4	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	O.I.	C.G.	H.G.
10.4	99.2	32.0	At3g14890	820718	phosphoesterase	F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
10.0	99.2	121.3	At4g24960	828598	ATHVA22D	Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.	O.I.	C.G.	H.G.
9.8	99.1	49.6	At1g68500	843179	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.4	99.1	37.8	At4g34740	829626	ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2)	Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.	O.I.	C.G.	H.G.
9.2	99.1	24.1	At3g09540	820111	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO	O.I.	C.G.	H.G.
9.1	99.1	14.0	At3g05660	819733	AtRLP33 (Receptor Like Protein 33)	F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAV	O.I.	C.G.	H.G.
8.9	99.0	347.9	At4g12470	826859	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA	O.I.	C.G.	H.G.
8.8	99.0	10.3	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
8.6	99.0	175.9	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
8.6	99.0	38.8	At2g41900	818790	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVA	O.I.	C.G.	H.G.

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GSM ID	GSM128802
Assay name	Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1
GSE experiment	GSE5535: Response to cold, soil grown plants

Microarray experiments to specifically-expressed genes

GSM ID GSM128802 Assay name Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1 GSE experiment GSE5535: Response to cold, soil grown plants

GSM ID GSM128802

Assay name Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1

GSE experiment GSE5535: Response to cold, soil grown plants