Microarray experiments to specifically-expressed genes

GSM ID GSM128785
Assay name Somerville_1-8_stem-GC7_Rep1_ATH1
GSE experiment GSE5533: Tissue Type Arrays of Columbia-0

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
296.3100.0335.0At5g60490836170FLA12F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAFO.I.C.G.H.G.
177.9100.042.9At1g63910842694AtMYB103 (myb domain protein 103)member of MYB3R- and R2R3- type MYB- encoding genesO.I.C.G.H.G.
158.499.9295.3At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
140.799.9245.7At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFO.I.C.G.H.G.
103.499.967.7At3g18660821397PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.O.I.C.G.H.G.
97.699.979.4At4g38400829997ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
97.099.977.3At3g55420824708unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
89.699.9216.8At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFO.I.C.G.H.G.
87.199.9793.7At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
85.199.9139.8At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
75.699.999.6At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.O.I.C.G.H.G.
64.899.846.4At3g07340819922basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFBO.I.C.G.H.G.
59.999.8123.9At1g22480838854plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFOO.I.C.G.H.G.
57.299.880.4At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
56.699.8270.8At5g42180834223peroxidase 64 (PER64) (P64) (PRXR4)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBMO.I.C.G.H.G.
54.299.8152.5At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
52.599.819.5At2g31900817748XIFEncodes an novel myosin isoform.O.I.C.G.H.G.
51.499.886.5At4g21650828252subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
50.799.8114.1At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).O.I.C.G.H.G.
48.099.8127.0At5g23860832451TUB8beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.O.I.C.G.H.G.
47.399.898.5At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
46.399.830.8At1g78950844234beta-amyrin synthase, putativeF:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMAO.I.C.G.H.G.
44.299.8101.3At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.C.G.H.G.
43.399.834.7At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
42.599.877.4At5g46340834677O-acetyltransferase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
40.999.8147.2At1g17620838339-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
39.499.869.0At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.O.I.C.G.H.G.
38.999.872.9At5g54690835558GAUT12 (GALACTURONOSYLTRANSFERASE 12)Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).O.I.C.G.H.G.
37.499.717.5At1g09950837529transcription factor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.899.744.5At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
36.199.745.1At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
34.799.7213.5At1g02205837602CER1 (ECERIFERUM 1)Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.O.I.C.G.H.G.
34.399.78.9At2g35870--O.I.C.G.H.G.
34.199.762.1At1g80170844357polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
33.699.7589.7At5g59320836051LTP3 (LIPID TRANSFER PROTEIN 3)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
32.999.715.3At5g01190831697LAC10 (laccase 10)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
32.299.789.5At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
31.999.733.6At5g14090831258unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
31.699.752.6At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
29.999.783.7At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
27.799.715.7At1g09610837488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
27.199.731.6At3g15050820734IQD10 (IQ-domain 10)F:calmodulin binding;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
26.499.752.9At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
26.299.766.9At3g62020825375GLP10 (GERMIN-LIKE PROTEIN 10)germin-like protein (GLP10)O.I.C.G.H.G.
25.999.750.8At1g27440839635GUT2F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
25.599.726.7At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.499.613.8At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMO.I.C.G.H.G.
25.299.620.0At1g72110843542unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
24.899.678.9At3g27960822420kinesin light chain-relatedF:binding;P:biological_process unknown;C:plasma membrane;MBOFPAVO.I.C.G.H.G.
24.699.698.2At3g06070819780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
23.899.6301.7At1g75280843865isoflavone reductase, putativeisoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.O.I.C.G.H.G.
23.699.621.7At1g69080843240universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMO.I.C.G.H.G.
22.899.620.0At1g54790841920GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
21.799.618.5At4g39320830087microtubule-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPO.I.C.G.H.G.
19.999.677.3At2g35860818159FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BMPOFAVO.I.C.G.H.G.
19.899.626.6At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
19.199.646.8At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
19.199.625.2At2g23360816868transport protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVO.I.C.G.H.G.
18.599.515.3At3g45870823730integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
18.399.563.4At2g28760817426NAD-dependent epimerase/dehydratase family proteinF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFVO.I.C.G.H.G.
18.299.596.5At4g34760829628auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
18.199.5101.7At5g03760831734ATCSLA09encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.O.I.C.G.H.G.
17.599.539.5At1g73640843698AtRABA6a (Arabidopsis Rab GTPase homolog A6a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
17.399.517.6At4g01140828157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
16.699.530.4At5g06930830584-F:unknown;P:unknown;C:chloroplast;OMBFPVAO.I.C.G.H.G.
16.399.585.3At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
16.099.535.3At2g24330816969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
15.799.536.7At5g40020833999pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOO.I.C.G.H.G.
15.699.5217.4At5g22580832321-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOFO.I.C.G.H.G.
15.699.516.7At1g79180844259MYB63 (MYB DOMAIN PROTEIN 63)Member of the R2R3 factor gene family.O.I.C.G.H.G.
15.299.428.9At5g23870832452pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOBO.I.C.G.H.G.
15.199.487.4At5g06700830559unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
15.199.421.9At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.O.I.C.G.H.G.
14.999.486.2At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
14.999.419.8At1g64760842784glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOBO.I.C.G.H.G.
14.799.424.0At2g02450814775ANAC035 (Arabidopsis NAC domain containing protein 35)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;OPMFBO.I.C.G.H.G.
14.599.412.8At5g23350832399GRAM domain-containing protein / ABA-responsive protein-relatedF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.299.474.3At2g12400815712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMO.I.C.G.H.G.
14.099.414.6At1g32770840171ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.O.I.C.G.H.G.
13.999.426.8At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
13.899.446.0At2g33570817922unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
13.899.430.1At5g48560834912basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBVO.I.C.G.H.G.
13.799.481.3At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
13.599.4208.8At3g23050821879IAA7 (INDOLE-3-ACETIC ACID 7)Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.H.G.
13.499.497.6At5g59290836047UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.O.I.C.G.H.G.
13.499.450.3At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
13.499.436.9At3g23090821884-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBAO.I.C.G.H.G.
13.499.46.3At2g46770819290EMB2301 (EMBRYO DEFECTIVE 2301)NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.O.I.C.G.H.G.
13.399.4321.1At2g14890815978AGP9 (ARABINOGALACTAN PROTEIN 9)putative proline-rich protein (At2g14890) mRNA, completeO.I.C.G.H.G.
13.399.413.2At1g68200843149zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFO.I.C.G.H.G.
13.099.475.9At4g22590828355trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFAO.I.C.G.H.G.
13.099.412.6At3g22070821769proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBPFVAO.I.C.G.H.G.
12.799.329.2At3g59690825138IQD13 (IQ-domain 13)F:calmodulin binding;P:unknown;C:plasma membrane;POMVFBO.I.C.G.H.G.
12.599.314.4At3g12955820481auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
12.599.35.2At4g18000827525unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.399.38.1At5g45970834637ARAC2 (ARABIDOPSIS RAC-LIKE 2)Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.O.I.C.G.H.G.
12.299.3163.7At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
12.199.338.5At4g36890829842IRX14 (irregular xylem 14)The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.O.I.C.G.H.G.
12.199.332.9At1g67050843025unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBVO.I.C.G.H.G.
11.999.372.5At2g38360818416PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.C.G.H.G.



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