Microarray experiments to specifically-expressed genes

GSM ID GSM128733
Assay name Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1
GSE experiment GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
447.8100.0308.9At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
426.5100.065.8At4g12530826865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
230.8100.0231.1At3g53300824497CYP71B31putative cytochrome P450O.I.C.G.H.G.
226.0100.061.8At3g14395820661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
216.9100.048.7At5g38130833793transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PFO.I.C.G.H.G.
192.7100.0179.3At2g39060818492nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
156.599.991.3At1g30795839961hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVO.I.C.G.H.G.
142.899.991.5At1g70720843409invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
117.699.954.9At4g39480830103CYP96A9 (CYTOCHROME P450 96 A9)member of CYP96AO.I.C.G.H.G.
114.099.9129.6At5g10770830944chloroplast nucleoid DNA-binding protein, putativeF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOBO.I.C.G.H.G.
107.499.992.7At3g01530821113AtMYB57 (myb domain protein 57)Member of the R2R3 factor gene family.O.I.C.G.H.G.
98.999.9109.8At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
93.599.9169.1At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POO.I.C.G.H.G.
88.199.9147.8At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
85.899.943.6At5g23960832461TPS21 (TERPENE SYNTHASE 21)Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.O.I.C.G.H.G.
84.399.9222.5At1g35310840420MLP168 (MLP-LIKE PROTEIN 168)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
82.499.983.4At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
82.499.962.5At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
77.999.963.0At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
77.399.918.6At1g75290843866oxidoreductase, acting on NADH or NADPHencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
73.099.921.1At1g09155837435AtPP2-B15 (Phloem protein 2-B15)F:carbohydrate binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
69.899.913.1At2g30650817615catalyticF:catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
67.799.928.4At1g70270843363ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
67.599.8121.8At2g45580819166CYP76C3member of CYP76CO.I.C.G.H.G.
67.499.875.9At1g23010838909LPR1 (Low Phosphate Root1)Encodes a protein with multicopper oxidase activity.O.I.C.G.H.G.
67.499.854.1At4g36110829768auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
62.399.897.7At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVO.I.C.G.H.G.
61.999.834.0At5g37170833690O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
60.999.875.4At1g66120842926acyl-activating enzyme 11 (AAE11)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
60.599.8108.0At3g01980821069short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPAO.I.C.G.H.G.
54.299.879.4At3g27810822401ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.O.I.C.G.H.G.
53.699.837.5At1g51490841574BGLU36 (BETA GLUCOSIDASE 36)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:mitochondrion;BOPMFAO.I.C.G.H.G.
48.999.887.9At5g37300833704WSD1Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.O.I.C.G.H.G.
48.899.8110.3At1g72290843561trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
45.899.85.3At3g23460821927cyclopropane fatty acid synthase-relatedF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFMO.I.C.G.H.G.
45.799.8116.7At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G.
39.899.899.6At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
39.699.8209.2At5g45950834635GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
39.099.8138.1At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.C.G.H.G.
37.799.765.8At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
34.799.792.6At2g38110818389GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)Encodes a protein with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
34.599.763.7At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
34.499.7100.1At1g76240843957unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;PMOO.I.C.G.H.G.
34.099.741.0At1g35290840418thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPAO.I.C.G.H.G.
33.699.740.4At4g38960830051zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
33.199.755.0At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
32.499.7105.2At3g51895824353SULTR3Encodes a sulfate transporter.O.I.C.G.H.G.
32.099.736.4At1g22380838845AtUGT85A3 (UDP-glucosyl transferase 85A3)F:transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
31.799.759.5At1g71710843501inositol polyphosphate 5-phosphatase, putativeF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOVO.I.C.G.H.G.
30.599.7130.3At5g18670831985BMY3putative beta-amylase BMY3 (BMY3)O.I.C.G.H.G.
30.599.7118.3At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
28.799.7115.1At5g63850836505AAP4Amino acid transporter whose expression is downregulated by dehydration.O.I.C.G.H.G.
28.399.760.4At2g47270819340transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
28.199.796.5At5g44620834490CYP706A3member of CYP706AO.I.C.G.H.G.
28.199.768.6At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
27.099.790.4At3g28007822424nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
27.099.747.7At1g29500839827auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;PO.I.C.G.H.G.
26.199.736.1At3g15270820758SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
25.499.653.0At1g54570841899esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOFO.I.C.G.H.G.
25.199.687.9At4g19430827684unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
25.199.615.3At3g44250823550CYP71B38putative cytochrome P450O.I.C.G.H.G.
24.799.638.4At2g21940816730shikimate kinase, putativeF:shikimate kinase activity, ATP binding;P:unknown;C:unknown;BOFPMAO.I.C.G.H.G.
24.699.6328.9At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
23.499.664.8At1g78780844214pathogenesis-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMO.I.C.G.H.G.
23.299.682.1At3g12110820385ACT11 (actin-11)Encodes an actin that is expressed predominantly during reproductive development.O.I.C.G.H.G.
23.099.634.7At1g27370839626squamosa promoter-binding protein-like 10 (SPL10)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
22.699.6143.8At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
22.499.669.9At2g34870818052MEE26 (maternal effect embryo arrest 26)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBAO.I.C.G.H.G.
22.299.6250.1At1g55260841970lipid bindingF:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;POO.I.C.G.H.G.
22.199.668.5At4g16360827331AMP-activated protein kinaseF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBO.I.C.G.H.G.
22.199.634.4At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
22.099.620.4At5g24860832555FPF1 (FLOWERING PROMOTING FACTOR 1)encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.O.I.C.G.H.G.
21.899.656.0At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.799.624.5At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.O.I.C.G.H.G.
21.799.614.0At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
21.399.6108.4At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
21.199.610.5At2g17845816294short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
20.799.661.4At3g55110824677ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
20.599.629.6At5g45940834634atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)Encodes a CoA pyrophosphatase, also has minor activity of NADH pyrophosphatase. Most strongly expressed in embryo cotyledon and hypocotyl, flower, and phloem of vascular tissue. Over-expression mutant had a bigger plant with wider rosette.O.I.C.G.H.G.
20.599.622.0At1g75300843867isoflavone reductase, putativeencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
20.099.612.7At1g74820843821cupin family proteinF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
19.599.617.0At1g51340841557MATE efflux family proteinF:drug transporter activity, antiporter activity;P:multidrug transport;C:endomembrane system, membrane;BOAPFMO.I.C.G.H.G.
19.299.669.8At3g14560820682unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.299.618.4At3g55870824753anthranilate synthase, alpha subunit, putativeF:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPMO.I.C.G.H.G.
19.099.572.7At4g24130828513unknown proteinF:unknown;P:biological_process unknown;C:nucleus;PO.I.C.G.H.G.
18.999.57.8At2g27240817266unknown proteinF:unknown;P:biological_process unknown;C:unknown;PBOFO.I.C.G.H.G.
18.899.532.9At3g26140822214glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BFPOAO.I.C.G.H.G.
18.899.511.8At1g130703766715-putative cytochrome P450O.I.C.G.H.G.
18.599.5109.0At1g68570843186proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
18.499.558.1At3g44735823603PSK1Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
18.199.511.7At5g42955834308unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
18.099.525.4At4g00950827948MEE47 (maternal effect embryo arrest 47)F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFOO.I.C.G.H.G.
17.599.537.7At1g28710839771unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
17.199.547.3At2g23620816894MES1 (METHYL ESTERASE 1)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
17.099.554.4At3g60570825228ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
16.999.547.3At3g14380820659integral membrane family proteinF:unknown;P:unknown;C:membrane;PO.I.C.G.H.G.
16.799.543.0At4g34750829627auxin-responsive protein, putative / small auxin up RNA (SAUR_E)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
16.299.530.0At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.O.I.C.G.H.G.
16.299.520.0At1g51440841569lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMVO.I.C.G.H.G.
16.199.5145.4At1g02205837602CER1 (ECERIFERUM 1)Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.O.I.C.G.H.G.



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