CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM128731

Assay name Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1

GSE experiment GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.1 99.9 32.2 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. O.I. C.G. H.G.
94.0 99.9 106.7 At1g65480 842859 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. O.I. C.G. H.G.
81.8 99.9 23.1 At3g14520 820677 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
77.7 99.9 194.2 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
73.7 99.9 33.2 At5g25390 832611 SHN2 (shine2) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
65.7 99.8 101.9 At3g49270 824088 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
62.6 99.8 145.2 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
59.0 99.8 56.2 At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
50.7 99.8 271.7 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
50.7 99.8 184.8 At1g75900 843923 family II extracellular lipase 3 (EXL3) F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM O.I. C.G. H.G.
46.6 99.8 131.3 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
46.2 99.8 104.7 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
46.1 99.8 72.7 At3g59845 825154 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPA O.I. C.G. H.G.
44.4 99.8 20.0 At5g42230 834228 scpl41 (serine carboxypeptidase-like 41) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
44.3 99.8 20.1 At3g61950 825368 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
39.1 99.8 414.9 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
38.9 99.8 24.8 At1g72110 843542 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
38.5 99.8 145.6 At1g57750 842150 CYP96A15 (CYTOCHROME P450 96 A1) Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis. O.I. C.G. H.G.
37.9 99.8 71.9 At4g28780 828999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
36.2 99.7 33.0 At1g01250 839322 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
35.9 99.7 82.8 At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
34.6 99.7 92.8 At4g33790 829521 CER4 (ECERIFERUM 4) Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces. O.I. C.G. H.G.
33.9 99.7 132.0 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. O.I. C.G. H.G.
33.9 99.7 30.6 At5g02190 831845 PCS1 (PROMOTION OF CELL SURVIVAL 1) encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage. O.I. C.G. H.G.
32.8 99.7 72.0 At5g37300 833704 WSD1 Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis. O.I. C.G. H.G.
32.3 99.7 61.7 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. O.I. C.G. H.G.
31.3 99.7 26.8 At1g17260 838297 AHA10 (Autoinhibited H(+)-ATPase isoform 10) belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process O.I. C.G. H.G.
29.2 99.7 54.4 At3g20470 3768804 GRP5 (GLYCINE-RICH PROTEIN 5) encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers. O.I. C.G. H.G.
29.2 99.7 38.6 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
29.1 99.7 31.0 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
28.9 99.7 154.2 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV O.I. C.G. H.G.
27.9 99.7 58.4 At1g66350 842953 RGL1 (RGA-LIKE 1) Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development. O.I. C.G. H.G.
27.8 99.7 22.0 At3g55710 824737 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF O.I. C.G. H.G.
27.3 99.7 21.9 At1g65445 842856 transferase-related F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
26.5 99.7 140.8 At5g45670 834606 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
26.1 99.7 87.1 At3g12110 820385 ACT11 (actin-11) Encodes an actin that is expressed predominantly during reproductive development. O.I. C.G. H.G.
25.5 99.7 136.5 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
24.6 99.6 42.2 At5g39860 833982 PRE1 (PACLOBUTRAZOL RESISTANCE1) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
23.3 99.6 16.1 At5g11360 831007 - F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.9 99.6 242.0 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
22.1 99.6 24.3 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. O.I. C.G. H.G.
21.9 99.6 18.2 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
21.8 99.6 16.3 At3g19620 821499 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall;BOFPAM O.I. C.G. H.G.
21.5 99.6 68.7 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
21.4 99.6 30.1 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. O.I. C.G. H.G.
19.7 99.6 35.6 At4g38400 829997 ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
19.7 99.6 27.4 At4g24260 828527 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
18.8 99.5 32.7 At2g38090 818387 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
18.6 99.5 32.1 At3g60900 825261 FLA10 F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA O.I. C.G. H.G.
17.8 99.5 359.2 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
17.8 99.5 198.1 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. C.G. H.G.
17.8 99.5 22.3 At4g15160 827182 lipid binding / structural constituent of cell wall F:lipid binding, structural constituent of cell wall;P:lipid transport;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
17.7 99.5 75.0 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
17.4 99.5 45.8 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. O.I. C.G. H.G.
17.2 99.5 45.2 At5g15780 831434 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
16.3 99.5 86.6 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo O.I. C.G. H.G.
16.2 99.5 17.5 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
16.1 99.5 18.1 At1g07450 837257 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
16.0 99.5 49.5 At1g65450 842857 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
16.0 99.5 14.2 At4g00870 827990 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
15.6 99.5 132.2 At2g14900 815979 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
15.6 99.5 31.1 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
15.5 99.5 30.9 At2g12480 815721 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
15.4 99.5 162.3 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
15.4 99.5 18.2 At4g16610 827362 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMFOB O.I. C.G. H.G.
14.9 99.4 37.7 At5g63140 836435 ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO O.I. C.G. H.G.
14.9 99.4 32.2 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
14.6 99.4 12.2 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
14.4 99.4 88.1 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
14.3 99.4 24.6 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.1 99.4 21.0 At4g32710 3770575 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
14.1 99.4 14.4 At1g76620 843995 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. C.G. H.G.
14.0 99.4 157.4 At5g57800 835889 CER3 (ECERIFERUM 3) encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis. O.I. C.G. H.G.
14.0 99.4 16.8 At2g28870 817436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.6 99.4 133.4 At1g02205 837602 CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase. O.I. C.G. H.G.
13.6 99.4 63.5 At1g11850 837732 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
13.4 99.4 23.6 At5g40150 834012 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
13.3 99.4 45.3 At2g33570 817922 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. C.G. H.G.
13.2 99.4 91.5 At1g06350 837146 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
13.1 99.4 26.1 At3g53950 824562 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOM O.I. C.G. H.G.
13.1 99.4 12.5 At5g16190 831477 ATCSLA11 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
12.9 99.3 21.8 At2g24630 816999 ATCSLC08 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
12.8 99.3 58.4 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
12.7 99.3 54.8 At1g49430 841367 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation. O.I. C.G. H.G.
12.7 99.3 40.6 At2g27130 817255 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
12.7 99.3 25.1 At4g10850 826682 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
12.5 99.3 149.4 At1g72970 843628 HTH (HOTHEAD) Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. O.I. C.G. H.G.
12.5 99.3 12.2 At1g70270 843363 ATP binding / DNA binding F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.4 99.3 18.0 At1g60060 842300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB O.I. C.G. H.G.
12.4 99.3 7.1 At3g10150 820178 PAP16 (PURPLE ACID PHOSPHATASE 16) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO O.I. C.G. H.G.
12.3 99.3 123.7 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
12.2 99.3 48.4 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
12.2 99.3 30.7 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
12.1 99.3 26.0 At1g06520 837163 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. O.I. C.G. H.G.
12.1 99.3 22.5 At2g40480 818643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFV O.I. C.G. H.G.
12.0 99.3 352.1 At5g59320 836051 LTP3 (LIPID TRANSFER PROTEIN 3) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
12.0 99.3 73.6 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO O.I. C.G. H.G.
12.0 99.3 72.3 At5g09370 830796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
11.8 99.3 59.6 At3g19550 821491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
11.7 99.3** 102.4 At4g18970 827632 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
112.1	99.9	32.2	At3g17600	821026	IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.	O.I.	C.G.	H.G.
94.0	99.9	106.7	At1g65480	842859	FT (FLOWERING LOCUS T)	FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	O.I.	C.G.	H.G.
81.8	99.9	23.1	At3g14520	820677	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
77.7	99.9	194.2	At5g47350	834782	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
73.7	99.9	33.2	At5g25390	832611	SHN2 (shine2)	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
65.7	99.8	101.9	At3g49270	824088	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
62.6	99.8	145.2	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
59.0	99.8	56.2	At4g21480	828233	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
50.7	99.8	271.7	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
50.7	99.8	184.8	At1g75900	843923	family II extracellular lipase 3 (EXL3)	F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOM	O.I.	C.G.	H.G.
46.6	99.8	131.3	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
46.2	99.8	104.7	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
46.1	99.8	72.7	At3g59845	825154	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPA	O.I.	C.G.	H.G.
44.4	99.8	20.0	At5g42230	834228	scpl41 (serine carboxypeptidase-like 41)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
44.3	99.8	20.1	At3g61950	825368	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
39.1	99.8	414.9	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
38.9	99.8	24.8	At1g72110	843542	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
38.5	99.8	145.6	At1g57750	842150	CYP96A15 (CYTOCHROME P450 96 A1)	Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.	O.I.	C.G.	H.G.
37.9	99.8	71.9	At4g28780	828999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
36.2	99.7	33.0	At1g01250	839322	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
35.9	99.7	82.8	At1g10640	837607	polygalacturonase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
34.6	99.7	92.8	At4g33790	829521	CER4 (ECERIFERUM 4)	Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.	O.I.	C.G.	H.G.
33.9	99.7	132.0	At5g49180	834977	pectinesterase family protein	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.	O.I.	C.G.	H.G.
33.9	99.7	30.6	At5g02190	831845	PCS1 (PROMOTION OF CELL SURVIVAL 1)	encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.	O.I.	C.G.	H.G.
32.8	99.7	72.0	At5g37300	833704	WSD1	Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.	O.I.	C.G.	H.G.
32.3	99.7	61.7	At5g15800	831436	SEP1 (SEPALLATA1)	Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.	O.I.	C.G.	H.G.
31.3	99.7	26.8	At1g17260	838297	AHA10 (Autoinhibited H(+)-ATPase isoform 10)	belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process	O.I.	C.G.	H.G.
29.2	99.7	54.4	At3g20470	3768804	GRP5 (GLYCINE-RICH PROTEIN 5)	encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers.	O.I.	C.G.	H.G.
29.2	99.7	38.6	At1g03170	839563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
29.1	99.7	31.0	At5g57520	835856	ZFP2 (ZINC FINGER PROTEIN 2)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
28.9	99.7	154.2	At1g56100	842062	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV	O.I.	C.G.	H.G.
27.9	99.7	58.4	At1g66350	842953	RGL1 (RGA-LIKE 1)	Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. RGL1 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Involved in flower and fruit development.	O.I.	C.G.	H.G.
27.8	99.7	22.0	At3g55710	824737	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
27.3	99.7	21.9	At1g65445	842856	transferase-related	F:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
26.5	99.7	140.8	At5g45670	834606	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
26.1	99.7	87.1	At3g12110	820385	ACT11 (actin-11)	Encodes an actin that is expressed predominantly during reproductive development.	O.I.	C.G.	H.G.
25.5	99.7	136.5	At2g22240	816757	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
24.6	99.6	42.2	At5g39860	833982	PRE1 (PACLOBUTRAZOL RESISTANCE1)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
23.3	99.6	16.1	At5g11360	831007	-	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.9	99.6	242.0	At5g33370	833315	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
22.1	99.6	24.3	At1g71890	843520	SUC5	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	O.I.	C.G.	H.G.
21.9	99.6	18.2	At5g58782	835993	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
21.8	99.6	16.3	At3g19620	821499	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall;BOFPAM	O.I.	C.G.	H.G.
21.5	99.6	68.7	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
21.4	99.6	30.1	At3g21500	821704	1-deoxy-D-xylulose-5-phosphate synthase	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	O.I.	C.G.	H.G.
19.7	99.6	35.6	At4g38400	829997	ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
19.7	99.6	27.4	At4g24260	828527	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
18.8	99.5	32.7	At2g38090	818387	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
18.6	99.5	32.1	At3g60900	825261	FLA10	F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA	O.I.	C.G.	H.G.
17.8	99.5	359.2	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
17.8	99.5	198.1	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	C.G.	H.G.
17.8	99.5	22.3	At4g15160	827182	lipid binding / structural constituent of cell wall	F:lipid binding, structural constituent of cell wall;P:lipid transport;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
17.7	99.5	75.0	At1g61720	842469	BAN (BANYULS)	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
17.4	99.5	45.8	At1g78970	844237	LUP1 (LUPEOL SYNTHASE 1)	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.	O.I.	C.G.	H.G.
17.2	99.5	45.2	At5g15780	831434	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
16.3	99.5	86.6	At3g02310	821151	SEP2 (SEPALLATA 2)	MADS-box protein, binds K domain of AG in vivo	O.I.	C.G.	H.G.
16.2	99.5	17.5	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
16.1	99.5	18.1	At1g07450	837257	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
16.0	99.5	49.5	At1g65450	842857	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
16.0	99.5	14.2	At4g00870	827990	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
15.6	99.5	132.2	At2g14900	815979	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
15.6	99.5	31.1	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
15.5	99.5	30.9	At2g12480	815721	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
15.4	99.5	162.3	At5g62740	836395	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
15.4	99.5	18.2	At4g16610	827362	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMFOB	O.I.	C.G.	H.G.
14.9	99.4	37.7	At5g63140	836435	ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO	O.I.	C.G.	H.G.
14.9	99.4	32.2	At5g60140	836136	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
14.6	99.4	12.2	At1g19830	838570	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.4	99.4	88.1	At1g67750	843100	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
14.3	99.4	24.6	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.1	99.4	21.0	At4g32710	3770575	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
14.1	99.4	14.4	At1g76620	843995	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.
14.0	99.4	157.4	At5g57800	835889	CER3 (ECERIFERUM 3)	encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.	O.I.	C.G.	H.G.
14.0	99.4	16.8	At2g28870	817436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.6	99.4	133.4	At1g02205	837602	CER1 (ECERIFERUM 1)	Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.	O.I.	C.G.	H.G.
13.6	99.4	63.5	At1g11850	837732	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
13.4	99.4	23.6	At5g40150	834012	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
13.3	99.4	45.3	At2g33570	817922	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	C.G.	H.G.
13.2	99.4	91.5	At1g06350	837146	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
13.1	99.4	26.1	At3g53950	824562	glyoxal oxidase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOM	O.I.	C.G.	H.G.
13.1	99.4	12.5	At5g16190	831477	ATCSLA11	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
12.9	99.3	21.8	At2g24630	816999	ATCSLC08	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
12.8	99.3	58.4	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
12.7	99.3	54.8	At1g49430	841367	LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)	Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.	O.I.	C.G.	H.G.
12.7	99.3	40.6	At2g27130	817255	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
12.7	99.3	25.1	At4g10850	826682	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
12.5	99.3	149.4	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	O.I.	C.G.	H.G.
12.5	99.3	12.2	At1g70270	843363	ATP binding / DNA binding	F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.4	99.3	18.0	At1g60060	842300	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB	O.I.	C.G.	H.G.
12.4	99.3	7.1	At3g10150	820178	PAP16 (PURPLE ACID PHOSPHATASE 16)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO	O.I.	C.G.	H.G.
12.3	99.3	123.7	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
12.2	99.3	48.4	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
12.2	99.3	30.7	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
12.1	99.3	26.0	At1g06520	837163	GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)	Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.	O.I.	C.G.	H.G.
12.1	99.3	22.5	At2g40480	818643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFV	O.I.	C.G.	H.G.
12.0	99.3	352.1	At5g59320	836051	LTP3 (LIPID TRANSFER PROTEIN 3)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
12.0	99.3	73.6	At5g23940	832459	EMB3009 (embryo defective 3009)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
12.0	99.3	72.3	At5g09370	830796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
11.8	99.3	59.6	At3g19550	821491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
11.7	99.3	102.4	At4g18970	827632	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.

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GSM ID	GSM128731
Assay name	Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1
GSE experiment	GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM128731 Assay name Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1 GSE experiment GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis

GSM ID GSM128731

Assay name Hennig_1-3_siliques-CK_021114_3_A_Rep1_ATH1

GSE experiment GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis