Microarray experiments to specifically-expressed genes

GSM ID GSM128730
Assay name Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1
GSE experiment GSE5526: Transcriptional Programs of Early Reproductive Stages in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
196.0100.044.6At4g12530826865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
184.2100.0206.4At3g53300824497CYP71B31putative cytochrome P450O.I.C.G.H.G.
184.0100.0164.7At5g10770830944chloroplast nucleoid DNA-binding protein, putativeF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOBO.I.C.G.H.G.
165.8100.093.9At1g30795839961hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVO.I.C.G.H.G.
156.799.9182.7At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
143.899.9154.9At2g39060818492nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
102.799.951.9At1g51490841574BGLU36 (BETA GLUCOSIDASE 36)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:mitochondrion;BOPMFAO.I.C.G.H.G.
82.199.9219.6At1g35310840420MLP168 (MLP-LIKE PROTEIN 168)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
79.999.942.1At5g23960832461TPS21 (TERPENE SYNTHASE 21)Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.O.I.C.G.H.G.
62.399.819.1At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
61.799.856.1At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
59.399.868.9At3g01530821113AtMYB57 (myb domain protein 57)Member of the R2R3 factor gene family.O.I.C.G.H.G.
52.699.8114.2At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
52.599.849.9At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
51.499.819.6At5g42955834308unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
47.699.830.0At5g24860832555FPF1 (FLOWERING PROMOTING FACTOR 1)encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.O.I.C.G.H.G.
47.499.852.7At1g70720843409invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
46.999.863.3At1g23010838909LPR1 (Low Phosphate Root1)Encodes a protein with multicopper oxidase activity.O.I.C.G.H.G.
46.699.834.5At4g39480830103CYP96A9 (CYTOCHROME P450 96 A9)member of CYP96AO.I.C.G.H.G.
43.799.8158.0At5g45890834629SAG12 (SENESCENCE-ASSOCIATED GENE 12)Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.O.I.C.G.H.G.
41.499.818.9At1g20180838607unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
39.599.8110.2At4g19430827684unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
38.299.891.4At4g10380826630NIP5Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
37.699.758.6At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
37.499.725.1At3g14395820661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.499.718.4At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
37.099.712.9At1g75290843866oxidoreductase, acting on NADH or NADPHencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
36.599.7104.3At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G.
36.099.717.5At1g45190841087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
35.999.7128.5At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
35.899.744.7At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.O.I.C.G.H.G.
34.599.721.5At1g02070839270unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.399.79.1At2g30650817615catalyticF:catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
33.299.752.9At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
32.899.7380.0At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
31.199.770.1At5g37300833704WSD1Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.O.I.C.G.H.G.
31.099.74.4At3g23460821927cyclopropane fatty acid synthase-relatedF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:chloroplast;OBPFMO.I.C.G.H.G.
30.899.7159.1At1g55020841944LOX1lipoxygenase, a defense gene conferring resistance Xanthomonas campestrisO.I.C.G.H.G.
30.399.738.7At1g35290840418thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:unknown;BOPAO.I.C.G.H.G.
30.199.759.5At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.O.I.C.G.H.G.
29.799.780.7At2g45580819166CYP76C3member of CYP76CO.I.C.G.H.G.
28.899.772.0At1g78780844214pathogenesis-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMO.I.C.G.H.G.
28.699.719.0At4g00870827990basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
28.599.763.2At1g30040839883ATGA2OX2 (GIBBERELLIN 2-OXIDASE)Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
27.399.734.5At4g36110829768auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
27.099.718.5At1g52970841730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.599.766.5At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.C.G.H.G.
26.599.79.2At2g27240817266unknown proteinF:unknown;P:biological_process unknown;C:unknown;PBOFO.I.C.G.H.G.
25.599.7167.8At5g45950834635GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
24.799.669.0At3g01980821069short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOFMPAO.I.C.G.H.G.
24.799.621.5At5g37170833690O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
24.299.689.7At5g44620834490CYP706A3member of CYP706AO.I.C.G.H.G.
24.299.686.1At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POO.I.C.G.H.G.
22.899.614.6At3g44250823550CYP71B38putative cytochrome P450O.I.C.G.H.G.
22.599.610.5At4g18980827634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.624.7At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.O.I.C.G.H.G.
22.199.653.4At2g47270819340transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
20.899.648.9At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
20.699.633.2At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
20.499.6196.0At5g50030835067invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.499.649.7At1g65480842859FT (FLOWERING LOCUS T)FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.O.I.C.G.H.G.
20.399.655.3At5g58960836013GIL1 (GRAVITROPIC IN THE LIGHT)Mutant plants display impaired light-regulation of the hypocotyl randomization response.O.I.C.G.H.G.
20.399.635.1At4g24000828500ATCSLG2encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
20.199.655.5At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVO.I.C.G.H.G.
20.199.635.7At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.C.G.H.G.
19.899.677.4At3g28007822424nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
19.799.668.4At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
19.499.6103.9At5g18670831985BMY3putative beta-amylase BMY3 (BMY3)O.I.C.G.H.G.
19.499.646.2At4g34750829627auxin-responsive protein, putative / small auxin up RNA (SAUR_E)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
19.399.628.6At4g19240827664unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.399.615.2At1g70270843363ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.599.5130.2At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
18.399.513.4At4g16730827376lyase/ magnesium ion bindingF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
18.299.535.5At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAO.I.C.G.H.G.
18.099.599.5At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
17.999.572.0At3g12110820385ACT11 (actin-11)Encodes an actin that is expressed predominantly during reproductive development.O.I.C.G.H.G.
17.599.5247.7At5g45880834628pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
17.499.59.7At3g04540819610-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
17.399.545.8At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
17.299.543.6At1g54570841899esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOFO.I.C.G.H.G.
17.199.58.6At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
17.099.549.5At5g37020833672ARF8 (AUXIN RESPONSE FACTOR 8)Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.O.I.C.G.H.G.
17.099.544.5At3g27810822401ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.O.I.C.G.H.G.
16.899.564.7At1g72290843561trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.799.535.5At4g03070828100AOP1Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.O.I.C.G.H.G.
16.699.570.9At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.O.I.C.G.H.G.
16.599.530.7At3g26140822214glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BFPOAO.I.C.G.H.G.
16.499.571.0At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
16.499.536.5At1g28710839771unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
16.499.511.9At5g45910834631GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOMO.I.C.G.H.G.
16.399.589.4At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.C.G.H.G.
16.199.563.3At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
16.199.537.2At4g18975827633pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.099.5238.4At1g24520839067BCP1Male fertility gene acting on tapetum and microsporeO.I.C.G.H.G.
15.899.572.9At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
15.499.557.9At2g34870818052MEE26 (maternal effect embryo arrest 26)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBAO.I.C.G.H.G.
15.399.4109.7At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
15.399.417.7At1g29230839797CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).O.I.C.G.H.G.
15.399.412.0At2g45040819111matrix metalloproteinaseF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFAO.I.C.G.H.G.
15.199.453.8At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1O.I.C.G.H.G.



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