CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM128728

Assay name Pieterse_1-14_Mpersicae-72h_Rep1_ATH1

GSE experiment GSE5525: Transcriptome changes of Arabidopsis during pathogen and insect attack

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
73.5 99.9 113.3 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA O.I. C.G. H.G.
24.5 99.6 93.0 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.1 99.6 187.8 At4g21870 828276 26.5 kDa class P-related heat shock protein (HSP26.5-P) F:unknown;P:response to heat;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
18.8 99.5 181.0 At5g62360 836357 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
17.6 99.5 25.0 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.9 99.5 93.4 At5g07580 830651 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
15.9 99.5 34.6 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
15.8 99.5 144.0 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
15.0 99.4 67.1 At1g22570 838863 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
14.7 99.4 85.7 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
13.5 99.4 215.0 At5g61590 836280 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
13.5 99.4 68.8 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
13.1 99.4 82.4 At1g66940 843012 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
12.1 99.3 902.1 At1g31580 840047 ECS1 Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750. O.I. C.G. H.G.
12.0 99.3 839.9 At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.9 99.3 226.5 At3g57520 824919 AtSIP2 (Arabidopsis thaliana seed imbibition 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
11.6 99.3 38.2 At5g50450 835113 zinc finger (MYND type) family protein F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
11.3 99.3 117.7 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
11.2 99.2 485.9 At5g20250 832147 DIN10 (DARK INDUCIBLE 10) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
10.8 99.2 564.7 At2g33830 817950 dormancy/auxin associated family protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 274.0 At1g11260 837667 STP1 (SUGAR TRANSPORTER 1) Encodes a H+/hexose cotransporter. O.I. C.G. H.G.
10.6 99.2 287.2 At1g08930 837414 ERD6 (EARLY RESPONSE TO DEHYDRATION 6) encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. O.I. C.G. H.G.
10.2 99.2 303.5 At2g15890 816085 MEE14 (maternal effect embryo arrest 14) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO O.I. C.G. H.G.
9.8 99.1 257.4 At2g29630 817513 THIC (ThiaminC) Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. O.I. C.G. H.G.
9.8 99.1 176.6 At4g32340 829368 - F:unknown;P:unknown;C:unknown;MPBOFVA O.I. C.G. H.G.
9.7 99.1 58.1 At4g17245 827437 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
9.5 99.1 38.2 At2g33570 817922 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. C.G. H.G.
9.2 99.1 59.9 At3g06070 819780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
9.0 99.1 11.5 At2g35390 818106 ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:unknown;OBMFAPV O.I. C.G. H.G.
8.9 99.0 286.7 At5g14120 831262 nodulin family protein F:unknown;P:unknown;C:plasma membrane, vacuole;BOPFMA O.I. C.G. H.G.
8.9 99.0 95.4 At5g25350 832607 EBF2 (EIN3-BINDING F BOX PROTEIN 2) Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. O.I. C.G. H.G.
8.7 99.0 27.6 At4g36410 829793 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) ubiquitin-conjugating enzyme O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
73.5	99.9	113.3	At4g13340	826964	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA	O.I.	C.G.	H.G.
24.5	99.6	93.0	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.1	99.6	187.8	At4g21870	828276	26.5 kDa class P-related heat shock protein (HSP26.5-P)	F:unknown;P:response to heat;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
18.8	99.5	181.0	At5g62360	836357	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
17.6	99.5	25.0	At3g10120	820175	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.9	99.5	93.4	At5g07580	830651	DNA binding / transcription factor	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
15.9	99.5	34.6	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
15.8	99.5	144.0	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
15.0	99.4	67.1	At1g22570	838863	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
14.7	99.4	85.7	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
13.5	99.4	215.0	At5g61590	836280	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
13.5	99.4	68.8	At3g20810	821629	transcription factor jumonji (jmjC) domain-containing protein	F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV	O.I.	C.G.	H.G.
13.1	99.4	82.4	At1g66940	843012	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
12.1	99.3	902.1	At1g31580	840047	ECS1	Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.	O.I.	C.G.	H.G.
12.0	99.3	839.9	At3g22240	821794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.9	99.3	226.5	At3g57520	824919	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
11.6	99.3	38.2	At5g50450	835113	zinc finger (MYND type) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
11.3	99.3	117.7	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
11.2	99.2	485.9	At5g20250	832147	DIN10 (DARK INDUCIBLE 10)	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
10.8	99.2	564.7	At2g33830	817950	dormancy/auxin associated family protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	274.0	At1g11260	837667	STP1 (SUGAR TRANSPORTER 1)	Encodes a H+/hexose cotransporter.	O.I.	C.G.	H.G.
10.6	99.2	287.2	At1g08930	837414	ERD6 (EARLY RESPONSE TO DEHYDRATION 6)	encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.	O.I.	C.G.	H.G.
10.2	99.2	303.5	At2g15890	816085	MEE14 (maternal effect embryo arrest 14)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO	O.I.	C.G.	H.G.
9.8	99.1	257.4	At2g29630	817513	THIC (ThiaminC)	Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.	O.I.	C.G.	H.G.
9.8	99.1	176.6	At4g32340	829368	-	F:unknown;P:unknown;C:unknown;MPBOFVA	O.I.	C.G.	H.G.
9.7	99.1	58.1	At4g17245	827437	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
9.5	99.1	38.2	At2g33570	817922	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	C.G.	H.G.
9.2	99.1	59.9	At3g06070	819780	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
9.0	99.1	11.5	At2g35390	818106	ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)	F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:unknown;OBMFAPV	O.I.	C.G.	H.G.
8.9	99.0	286.7	At5g14120	831262	nodulin family protein	F:unknown;P:unknown;C:plasma membrane, vacuole;BOPFMA	O.I.	C.G.	H.G.
8.9	99.0	95.4	At5g25350	832607	EBF2 (EIN3-BINDING F BOX PROTEIN 2)	Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.	O.I.	C.G.	H.G.
8.7	99.0	27.6	At4g36410	829793	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	ubiquitin-conjugating enzyme	O.I.	C.G.	H.G.

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GSM ID	GSM128728
Assay name	Pieterse_1-14_Mpersicae-72h_Rep1_ATH1
GSE experiment	GSE5525: Transcriptome changes of Arabidopsis during pathogen and insect attack

Microarray experiments to specifically-expressed genes

GSM ID GSM128728 Assay name Pieterse_1-14_Mpersicae-72h_Rep1_ATH1 GSE experiment GSE5525: Transcriptome changes of Arabidopsis during pathogen and insect attack

GSM ID GSM128728

Assay name Pieterse_1-14_Mpersicae-72h_Rep1_ATH1

GSE experiment GSE5525: Transcriptome changes of Arabidopsis during pathogen and insect attack