CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM128670

Assay name Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1

GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
53.4 99.8 40.4 At2g15080 815997 AtRLP19 (Receptor Like Protein 19) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
41.7 99.8 92.9 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. O.I. C.G. H.G.
40.5 99.8 52.4 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.
37.2 99.7 41.9 At4g23300 828429 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
36.6 99.7 154.7 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
36.6 99.7 39.2 At1g30410 839921 ATMRP13 member of MRP subfamily O.I. C.G. H.G.
36.2 99.7 72.8 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. O.I. C.G. H.G.
32.1 99.7 37.4 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
31.1 99.7 84.8 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
29.7 99.7 16.2 At2g25470 817085 AtRLP21 (Receptor Like Protein 21) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV O.I. C.G. H.G.
29.3 99.7 148.0 At3g23550 821934 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
28.9 99.7 179.9 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA O.I. C.G. H.G.
27.5 99.7 51.0 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.4 99.7 301.5 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM O.I. C.G. H.G.
27.1 99.7 38.8 At1g12940 837852 ATNRT2.5 (nitrate transporter2.5) member of High affinity nitrate transporter family O.I. C.G. H.G.
26.9 99.7 86.0 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. C.G. H.G.
26.1 99.7 43.8 At4g01720 828001 WRKY47 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
25.9 99.7 30.8 At1g66910 843009 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
24.8 99.6 104.9 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. O.I. C.G. H.G.
24.2 99.6 61.1 At1g64400 842748 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV O.I. C.G. H.G.
23.3 99.6 288.6 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA O.I. C.G. H.G.
23.0 99.6 29.7 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
22.6 99.6 65.9 At4g21120 827860 AAT1 (AMINO ACID TRANSPORTER 1) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. O.I. C.G. H.G.
22.1 99.6 80.9 At3g45060 823641 ATNRT2.6 member of High affinity nitrate transporter family O.I. C.G. H.G.
21.4 99.6 60.0 At2g41700 818768 ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter F:ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity;P:unknown;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
21.3 99.6 46.5 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
21.1 99.6 53.8 At5g36220 833619 CYP81D1 (CYTOCHROME P450 81D1) member of CYP81D O.I. C.G. H.G.
20.1 99.6 78.6 At1g23090 838917 AST91 (SULFATE TRANSPORTER 91) Encodes AST91 mRNA for sulfate transporter. O.I. C.G. H.G.
20.1 99.6 59.4 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
20.0 99.6 56.4 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
19.9 99.6 103.1 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.5 99.6 26.0 At3g45290 823667 MLO3 (MILDEW RESISTANCE LOCUS O 3) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
19.5 99.6 22.3 At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA O.I. C.G. H.G.
19.4 99.6 9.3 At1g66570 842975 ATSUC7 (Sucrose-proton symporter 7) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFA O.I. C.G. H.G.
19.2 99.6 50.6 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
18.7 99.5 52.1 At1g58848 842226 ATP binding / protein binding F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA O.I. C.G. H.G.
18.6 99.5 170.7 At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
18.4 99.5 185.8 At2g01670 814696 atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17) F:hydrolase activity;P:biological_process unknown;C:unknown;MBPOF O.I. C.G. H.G.
18.3 99.5 63.3 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
18.2 99.5 75.1 At5g52450 835321 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM O.I. C.G. H.G.
17.6 99.5 57.6 At5g01540 831722 LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. O.I. C.G. H.G.
17.3 99.5 16.1 At4g04220 825737 AtRLP46 (Receptor Like Protein 46) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
17.2 99.5 39.0 At3g57630 824932 exostosin family protein F:catalytic activity;P:unknown;C:endomembrane system, membrane;MPOFB O.I. C.G. H.G.
16.9 99.5 17.4 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
16.8 99.5 73.3 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. C.G. H.G.
16.6 99.5 97.7 At3g50740 824238 UGT72E1 (UDP-glucosyl transferase 72E1) UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. O.I. C.G. H.G.
16.5 99.5 75.8 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
16.5 99.5 65.1 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. O.I. C.G. H.G.
16.4 99.5 97.4 At5g07010 830592 ST2A (SULFOTRANSFERASE 2A) Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). O.I. C.G. H.G.
16.3 99.5 36.4 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.9 99.5 22.9 At5g46450 834688 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
15.6 99.5 85.0 At3g53180 824484 catalytic/ glutamate-ammonia ligase F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP O.I. C.G. H.G.
15.5 99.5 69.6 At1g10585 837600 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
15.4 99.5 65.7 At5g43190 834337 F-box family protein (FBX6) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO O.I. C.G. H.G.
15.4 99.5 25.6 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
15.2 99.4 45.4 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
15.1 99.4 37.7 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.0 99.4 69.1 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
15.0 99.4 56.3 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
14.9 99.4 90.8 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
14.7 99.4 205.9 At3g50480 824212 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 O.I. C.G. H.G.
14.6 99.4 13.7 At5g36930 833662 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
14.4 99.4 29.7 At5g01850 831760 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
14.3 99.4 23.0 At2g14080 815893 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV O.I. C.G. H.G.
14.2 99.4 140.2 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
14.1 99.4 24.0 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
14.0 99.4 116.0 At1g78080 844143 RAP2.4 (related to AP2 4) encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. O.I. C.G. H.G.
13.9 99.4 76.9 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain O.I. C.G. H.G.
13.9 99.4 45.5 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO O.I. C.G. H.G.
13.9 99.4 33.6 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
13.8 99.4 149.3 At4g36670 829820 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
13.8 99.4 44.7 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
13.8 99.4 44.1 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
13.8 99.4 28.0 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
13.7 99.4 35.0 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
13.7 99.4 23.9 At1g05300 837029 ZIP5 member of Fe(II) transporter isolog family O.I. C.G. H.G.
13.6 99.4 89.2 At5g53550 835437 YSL3 (YELLOW STRIPE LIKE 3) F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAV O.I. C.G. H.G.
13.6 99.4 70.1 At4g03030 828110 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF O.I. C.G. H.G.
13.6 99.4 53.0 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM O.I. C.G. H.G.
13.5 99.4 128.9 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
13.2 99.4 115.0 At4g08850 826456 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA O.I. C.G. H.G.
13.2 99.4 31.1 At1g24040 839016 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;PBAOM O.I. C.G. H.G.
13.1 99.4 189.1 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. O.I. C.G. H.G.
13.1 99.4 88.5 At5g39050 833897 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
13.0 99.4 81.9 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
12.9 99.3 66.3 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
12.8 99.3 37.0 At1g16260 838195 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
12.8 99.3 22.2 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
12.6 99.3 68.2 At5g17860 831654 CAX7 (calcium exchanger 7) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
12.6 99.3 49.6 At4g19450 827686 nodulin-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOFAM O.I. C.G. H.G.
12.6 99.3 15.2 At1g01420 837503 UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
12.5 99.3 131.2 At5g48380 834892 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
12.5 99.3 19.9 At5g15020 831354 SNL2 (SIN3-LIKE 2) Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). O.I. C.G. H.G.
12.4 99.3 127.8 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
12.4 99.3 119.8 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
12.4 99.3 117.7 At1g70700 843407 TIFY7 JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
12.4 99.3 19.0 At1g08800 837402 unknown protein F:unknown;P:response to salt stress, N-terminal protein myristoylation;C:endomembrane system;MOBPFAV O.I. C.G. H.G.
12.2 99.3 22.8 At3g04110 819566 GLR1.1 (GLUTAMATE RECEPTOR 1.1) putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. O.I. C.G. H.G.
12.2 99.3 12.0 At3g47090 823862 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
12.1 99.3 62.8 At1g67840 843110 CSK (CHLOROPLAST SENSOR KINASE) Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
53.4	99.8	40.4	At2g15080	815997	AtRLP19 (Receptor Like Protein 19)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
41.7	99.8	92.9	At5g46050	834646	PTR3 (PEPTIDE TRANSPORTER 3)	Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.	O.I.	C.G.	H.G.
40.5	99.8	52.4	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.
37.2	99.7	41.9	At4g23300	828429	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
36.6	99.7	154.7	At2g17740	816283	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
36.6	99.7	39.2	At1g30410	839921	ATMRP13	member of MRP subfamily	O.I.	C.G.	H.G.
36.2	99.7	72.8	At4g23210	828420	protein kinase family protein	Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	O.I.	C.G.	H.G.
32.1	99.7	37.4	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
31.1	99.7	84.8	At1g51800	841606	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
29.7	99.7	16.2	At2g25470	817085	AtRLP21 (Receptor Like Protein 21)	F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV	O.I.	C.G.	H.G.
29.3	99.7	148.0	At3g23550	821934	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
28.9	99.7	179.9	At4g12500	826862	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:unknown;POBMVFA	O.I.	C.G.	H.G.
27.5	99.7	51.0	At3g21080	821660	ABC transporter-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.4	99.7	301.5	At2g43620	818964	chitinase, putative	F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM	O.I.	C.G.	H.G.
27.1	99.7	38.8	At1g12940	837852	ATNRT2.5 (nitrate transporter2.5)	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
26.9	99.7	86.0	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	C.G.	H.G.
26.1	99.7	43.8	At4g01720	828001	WRKY47	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
25.9	99.7	30.8	At1g66910	843009	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
24.8	99.6	104.9	At2g19190	816436	FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)	Receptor-like protein kinase. Involved in early defense signaling.	O.I.	C.G.	H.G.
24.2	99.6	61.1	At1g64400	842748	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
23.3	99.6	288.6	At4g12490	826861	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA	O.I.	C.G.	H.G.
23.0	99.6	29.7	At1g64170	842721	ATCHX16 (CATION/H+ EXCHANGER 16)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
22.6	99.6	65.9	At4g21120	827860	AAT1 (AMINO ACID TRANSPORTER 1)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.	O.I.	C.G.	H.G.
22.1	99.6	80.9	At3g45060	823641	ATNRT2.6	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
21.4	99.6	60.0	At2g41700	818768	ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter	F:ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity;P:unknown;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
21.3	99.6	46.5	At1g51790	841605	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
21.1	99.6	53.8	At5g36220	833619	CYP81D1 (CYTOCHROME P450 81D1)	member of CYP81D	O.I.	C.G.	H.G.
20.1	99.6	78.6	At1g23090	838917	AST91 (SULFATE TRANSPORTER 91)	Encodes AST91 mRNA for sulfate transporter.	O.I.	C.G.	H.G.
20.1	99.6	59.4	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
20.0	99.6	56.4	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
19.9	99.6	103.1	At1g35710	840475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.5	99.6	26.0	At3g45290	823667	MLO3 (MILDEW RESISTANCE LOCUS O 3)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
19.5	99.6	22.3	At4g25110	828614	AtMC2 (metacaspase 2)	F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA	O.I.	C.G.	H.G.
19.4	99.6	9.3	At1g66570	842975	ATSUC7 (Sucrose-proton symporter 7)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFA	O.I.	C.G.	H.G.
19.2	99.6	50.6	At1g51890	841616	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
18.7	99.5	52.1	At1g58848	842226	ATP binding / protein binding	F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA	O.I.	C.G.	H.G.
18.6	99.5	170.7	At5g05600	830443	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
18.4	99.5	185.8	At2g01670	814696	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	F:hydrolase activity;P:biological_process unknown;C:unknown;MBPOF	O.I.	C.G.	H.G.
18.3	99.5	63.3	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
18.2	99.5	75.1	At5g52450	835321	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAM	O.I.	C.G.	H.G.
17.6	99.5	57.6	At5g01540	831722	LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)	Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.	O.I.	C.G.	H.G.
17.3	99.5	16.1	At4g04220	825737	AtRLP46 (Receptor Like Protein 46)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
17.2	99.5	39.0	At3g57630	824932	exostosin family protein	F:catalytic activity;P:unknown;C:endomembrane system, membrane;MPOFB	O.I.	C.G.	H.G.
16.9	99.5	17.4	At4g23130	828412	CRK5 (CYSTEINE-RICH RLK5)	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
16.8	99.5	73.3	At2g46430	819251	ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)	cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	O.I.	C.G.	H.G.
16.6	99.5	97.7	At3g50740	824238	UGT72E1 (UDP-glucosyl transferase 72E1)	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	O.I.	C.G.	H.G.
16.5	99.5	75.8	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
16.5	99.5	65.1	At2g04160	814953	AIR3	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.	O.I.	C.G.	H.G.
16.4	99.5	97.4	At5g07010	830592	ST2A (SULFOTRANSFERASE 2A)	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	O.I.	C.G.	H.G.
16.3	99.5	36.4	At4g23260	828425	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.9	99.5	22.9	At5g46450	834688	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
15.6	99.5	85.0	At3g53180	824484	catalytic/ glutamate-ammonia ligase	F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP	O.I.	C.G.	H.G.
15.5	99.5	69.6	At1g10585	837600	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
15.4	99.5	65.7	At5g43190	834337	F-box family protein (FBX6)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
15.4	99.5	25.6	At2g29120	817460	ATGLR2.7	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
15.2	99.4	45.4	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
15.1	99.4	37.7	At1g61380	842432	SD1-29 (S-DOMAIN-1 29)	F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.0	99.4	69.1	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
15.0	99.4	56.3	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
14.9	99.4	90.8	At3g55970	824763	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
14.7	99.4	205.9	At3g50480	824212	HR4 (HOMOLOG OF RPW8 4)	Homolog of RPW8	O.I.	C.G.	H.G.
14.6	99.4	13.7	At5g36930	833662	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
14.4	99.4	29.7	At5g01850	831760	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
14.3	99.4	23.0	At2g14080	815893	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
14.2	99.4	140.2	At4g22470	828342	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
14.1	99.4	24.0	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
14.0	99.4	116.0	At1g78080	844143	RAP2.4 (related to AP2 4)	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily.	O.I.	C.G.	H.G.
13.9	99.4	76.9	At3g22060	821768	receptor protein kinase-related	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	O.I.	C.G.	H.G.
13.9	99.4	45.5	At5g47330	834780	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
13.9	99.4	33.6	At5g67450	836881	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
13.8	99.4	149.3	At4g36670	829820	mannitol transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
13.8	99.4	44.7	At1g51850	841612	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
13.8	99.4	44.1	At3g28540	822484	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
13.8	99.4	28.0	At1g26420	839184	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
13.7	99.4	35.0	At5g44870	834517	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
13.7	99.4	23.9	At1g05300	837029	ZIP5	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
13.6	99.4	89.2	At5g53550	835437	YSL3 (YELLOW STRIPE LIKE 3)	F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAV	O.I.	C.G.	H.G.
13.6	99.4	70.1	At4g03030	828110	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF	O.I.	C.G.	H.G.
13.6	99.4	53.0	At3g43270	823402	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM	O.I.	C.G.	H.G.
13.5	99.4	128.9	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
13.2	99.4	115.0	At4g08850	826456	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA	O.I.	C.G.	H.G.
13.2	99.4	31.1	At1g24040	839016	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;PBAOM	O.I.	C.G.	H.G.
13.1	99.4	189.1	At4g13510	826983	AMT1	Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.	O.I.	C.G.	H.G.
13.1	99.4	88.5	At5g39050	833897	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
13.0	99.4	81.9	At2g39200	818505	MLO12 (MILDEW RESISTANCE LOCUS O 12)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
12.9	99.3	66.3	At5g65870	836716	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
12.8	99.3	37.0	At1g16260	838195	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
12.8	99.3	22.2	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
12.6	99.3	68.2	At5g17860	831654	CAX7 (calcium exchanger 7)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
12.6	99.3	49.6	At4g19450	827686	nodulin-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOFAM	O.I.	C.G.	H.G.
12.6	99.3	15.2	At1g01420	837503	UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
12.5	99.3	131.2	At5g48380	834892	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
12.5	99.3	19.9	At5g15020	831354	SNL2 (SIN3-LIKE 2)	Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).	O.I.	C.G.	H.G.
12.4	99.3	127.8	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
12.4	99.3	119.8	At3g47960	823951	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
12.4	99.3	117.7	At1g70700	843407	TIFY7	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
12.4	99.3	19.0	At1g08800	837402	unknown protein	F:unknown;P:response to salt stress, N-terminal protein myristoylation;C:endomembrane system;MOBPFAV	O.I.	C.G.	H.G.
12.2	99.3	22.8	At3g04110	819566	GLR1.1 (GLUTAMATE RECEPTOR 1.1)	putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	O.I.	C.G.	H.G.
12.2	99.3	12.0	At3g47090	823862	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
12.1	99.3	62.8	At1g67840	843110	CSK (CHLOROPLAST SENSOR KINASE)	Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.	O.I.	C.G.	H.G.

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GSM ID	GSM128670
Assay name	Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1
GSE experiment	GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Microarray experiments to specifically-expressed genes

GSM ID GSM128670 Assay name Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1 GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

GSM ID GSM128670

Assay name Underwood_1-23_hrpAfliC-10e8-7h_Rep2_ATH1

GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction