CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM128660

Assay name Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1

GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
163.9 99.9 195.2 At1g13340 837894 unknown protein F:unknown;P:response to oxidative stress;C:unknown;MPFO O.I. C.G. H.G.
154.7 99.9 121.1 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
118.8 99.9 174.0 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
111.0 99.9 196.5 At5g13320 831173 PBS3 (AVRPPHB SUSCEPTIBLE 3) Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants. O.I. C.G. H.G.
97.5 99.9 256.3 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
96.3 99.9 385.0 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM O.I. C.G. H.G.
95.0 99.9 219.9 At5g26920 832750 CBP60G (CAM-BINDING PROTEIN 60-LIKE.G) Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling. O.I. C.G. H.G.
90.7 99.9 91.5 At3g52430 824408 PAD4 (PHYTOALEXIN DEFICIENT 4) Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. O.I. C.G. H.G.
75.8 99.9 187.3 At1g57630 842139 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
73.1 99.9 205.5 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV O.I. C.G. H.G.
70.5 99.9 74.3 At5g60800 836201 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;POMFBVA O.I. C.G. H.G.
70.4 99.9 75.9 At1g08050 837321 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAV O.I. C.G. H.G.
57.0 99.8 140.8 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
54.8 99.8 104.4 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. C.G. H.G.
51.6 99.8 76.3 At1g33960 840293 AIG1 (AVRRPT2-INDUCED GENE 1) Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 O.I. C.G. H.G.
48.4 99.8 106.2 At5g17760 831644 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAV O.I. C.G. H.G.
46.1 99.8 31.5 At1g01010 839580 ANAC001 (Arabidopsis NAC domain containing protein 1) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
43.6 99.8 85.3 At3g13910 820604 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
43.3 99.8 188.5 At2g30550 817604 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV O.I. C.G. H.G.
43.2 99.8 77.6 At3g14060 820620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall, cytoplasm;P O.I. C.G. H.G.
42.5 99.8 76.2 At4g17070 827415 peptidyl-prolyl cis-trans isomerase F:peptidyl-prolyl cis-trans isomerase activity;P:response to oxidative stress;C:unknown;PBMO O.I. C.G. H.G.
41.5 99.8 113.1 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). O.I. C.G. H.G.
41.3 99.8 35.1 At5g43910 834413 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
38.9 99.8 92.3 At1g35230 840412 AGP5 (ARABINOGALACTAN-PROTEIN 5) Encodes arabinogalactan-protein (AGP5). O.I. C.G. H.G.
38.0 99.8 50.8 At4g23060 828405 IQD22 (IQ-domain 22) F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMF O.I. C.G. H.G.
37.6 99.7 129.3 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
36.8 99.7 73.5 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. O.I. C.G. H.G.
36.5 99.7 64.3 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV O.I. C.G. H.G.
36.1 99.7 103.3 At1g72940 843625 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB O.I. C.G. H.G.
34.9 99.7 352.9 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA O.I. C.G. H.G.
33.5 99.7 108.1 At2g17220 816227 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
32.8 99.7 126.1 At3g44720 823601 ADT4 (arogenate dehydratase 4) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.
32.4 99.7 18.0 At4g38560 830013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV O.I. C.G. H.G.
30.5 99.7 44.0 At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
30.2 99.7 53.4 At4g02880 828150 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
29.4 99.7 52.5 At3g01820 821071 adenylate kinase family protein F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
27.9 99.7 162.9 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
27.7 99.7 95.8 At4g39030 830058 EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5) Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient. O.I. C.G. H.G.
26.3 99.7 38.3 At5g10190 830883 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV O.I. C.G. H.G.
25.3 99.6 269.9 At3g50480 824212 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 O.I. C.G. H.G.
24.8 99.6 28.5 At2g04430 814983 atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5) F:hydrolase activity;P:unknown;C:cytosol;BOMPAFV O.I. C.G. H.G.
24.7 99.6 36.7 At2g28570 817405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
24.5 99.6 49.8 At5g38895 833881 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MPOFV O.I. C.G. H.G.
24.2 99.6 56.9 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata O.I. C.G. H.G.
23.9 99.6 36.4 At1g12940 837852 ATNRT2.5 (nitrate transporter2.5) member of High affinity nitrate transporter family O.I. C.G. H.G.
23.5 99.6 96.7 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. O.I. C.G. H.G.
23.5 99.6 52.5 At4g29740 829096 CKX4 (CYTOKININ OXIDASE 4) It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
23.0 99.6 54.1 At1g62420 842540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
22.8 99.6 144.4 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
22.7 99.6 58.6 At3g25890 822185 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
22.6 99.6 219.6 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. C.G. H.G.
22.4 99.6 222.3 At5g24210 832488 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO O.I. C.G. H.G.
22.2 99.6 111.8 At2g38290 818409 ATAMT2 (AMMONIUM TRANSPORTER 2) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. O.I. C.G. H.G.
21.6 99.6 37.9 At4g02220 828106 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein F:zinc ion binding;P:unknown;C:cytoplasm;MOFP O.I. C.G. H.G.
21.0 99.6 29.6 At2g43320 818933 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB O.I. C.G. H.G.
21.0 99.6 14.2 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.9 99.6 63.9 At3g50260 824188 CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
20.7 99.6 42.9 At2g38000 818378 chaperone protein dnaJ-related F:unknown;P:unknown;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
20.5 99.6 11.4 At3g57950 824964 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
20.4 99.6 24.2 At3g13100 820498 ATMRP7 member of MRP subfamily O.I. C.G. H.G.
20.1 99.6 29.0 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
20.0 99.6 87.4 At1g73800 - - O.I. C.G. H.G.
19.9 99.6 54.6 At4g00700 828031 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
19.9 99.6 21.2 At3g57460 824913 catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPO O.I. C.G. H.G.
19.8 99.6 238.6 At5g26340 832703 MSS1 Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. O.I. C.G. H.G.
19.6 99.6 45.1 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.5 99.6 209.7 At4g23470 828446 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
19.5 99.6 32.4 At4g38260 829983 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
18.9 99.5 302.5 At5g40780 834078 LHT1 Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. O.I. C.G. H.G.
18.9 99.5 50.2 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
18.8 99.5 98.9 At3g46510 823804 PUB13 (PLANT U-BOX 13) Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. O.I. C.G. H.G.
18.4 99.5 36.0 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
18.3 99.5 268.4 At2g26400 817180 ATARD3 (ACIREDUCTONE DIOXYGENASE 3) Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family. O.I. C.G. H.G.
17.7 99.5 67.5 At3g45040 823639 phosphatidate cytidylyltransferase family protein Encodes a putative dolichol kinase. O.I. C.G. H.G.
17.4 99.5 17.0 At5g47130 834759 Bax inhibitor-1 family / BI-1 family F:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFV O.I. C.G. H.G.
17.3 99.5 71.3 At2g47800 819392 ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. O.I. C.G. H.G.
17.2 99.5 31.9 At1g70690 843406 HWI1 (HOPW1-1-INDUCED GENE1) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
17.0 99.5 78.4 At4g03030 828110 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF O.I. C.G. H.G.
16.7 99.5 27.5 At4g36710 829824 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO O.I. C.G. H.G.
16.6 99.5 36.4 At5g61060 836227 HDA05 (HISTONE DEACETYLASE 5) Encodes a member of the histone deacetylase family. O.I. C.G. H.G.
16.4 99.5 134.8 At4g33300 829466 ADR1-L1 (ADR1-like 1) F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFA O.I. C.G. H.G.
16.3 99.5 321.3 At2g41410 818739 calmodulin, putative F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB O.I. C.G. H.G.
16.3 99.5 106.3 At5g22000 832260 RHF2A (RING-H2 GROUP F2A) encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. O.I. C.G. H.G.
16.1 99.5 219.2 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. O.I. C.G. H.G.
16.1 99.5 149.5 At3g01540 821116 DRH1 (DEAD BOX RNA HELICASE 1) RNA HELICASE DRH1 O.I. C.G. H.G.
16.0 99.5 64.8 At4g00330 828125 CRCK2 high overall homology to CRCK1 O.I. C.G. H.G.
15.9 99.5 47.4 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
15.8 99.5 20.7 At1g34420 840345 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
15.7 99.5 67.6 At5g58220 835934 TTL (Transthyretin-Like protein) F:steroid binding;P:regulation of cell growth by extracellular stimulus, brassinosteroid mediated signaling;C:extrinsic to internal side of plasma membrane, peroxisome;BOMFPA O.I. C.G. H.G.
15.6 99.5 19.9 At1g10210 837559 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) Encodes ATMPK1. O.I. C.G. H.G.
15.4 99.5 115.6 At4g17900 827514 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.4 99.5 54.2 At2g47420 819355 dimethyladenosine transferase, putative F:rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity;P:rRNA modification, rRNA processing;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
15.4 99.5 14.6 At5g67190 836854 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
15.3 99.4 208.0 At1g69840 843320 band 7 family protein F:unknown;P:biological_process unknown;C:plasma membrane, chloroplast, vacuole;BOMFPAV O.I. C.G. H.G.
15.2 99.4 77.9 At1g48320 841252 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM O.I. C.G. H.G.
15.1 99.4 200.9 At3g05500 819715 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
15.1 99.4 24.8 At1g61260 842420 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
15.0 99.4 42.2 At5g07360 830627 amidase family protein F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:unknown;BOFMPA O.I. C.G. H.G.
14.9 99.4 65.1 At2g01650 814694 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. O.I. C.G. H.G.
14.9 99.4 19.8 At1g80450 844384 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
163.9	99.9	195.2	At1g13340	837894	unknown protein	F:unknown;P:response to oxidative stress;C:unknown;MPFO	O.I.	C.G.	H.G.
154.7	99.9	121.1	At3g21080	821660	ABC transporter-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
118.8	99.9	174.0	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
111.0	99.9	196.5	At5g13320	831173	PBS3 (AVRPPHB SUSCEPTIBLE 3)	Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.	O.I.	C.G.	H.G.
97.5	99.9	256.3	At1g43910	840990	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
96.3	99.9	385.0	At3g60420	825213	-	F:unknown;P:unknown;C:cellular_component unknown;OBFPM	O.I.	C.G.	H.G.
95.0	99.9	219.9	At5g26920	832750	CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)	Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.	O.I.	C.G.	H.G.
90.7	99.9	91.5	At3g52430	824408	PAD4 (PHYTOALEXIN DEFICIENT 4)	Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.	O.I.	C.G.	H.G.
75.8	99.9	187.3	At1g57630	842139	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
73.1	99.9	205.5	At2g04450	814985	ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)	F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV	O.I.	C.G.	H.G.
70.5	99.9	74.3	At5g60800	836201	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:unknown;POMFBVA	O.I.	C.G.	H.G.
70.4	99.9	75.9	At1g08050	837321	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAV	O.I.	C.G.	H.G.
57.0	99.8	140.8	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
54.8	99.8	104.4	At3g47480	823902	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
51.6	99.8	76.3	At1g33960	840293	AIG1 (AVRRPT2-INDUCED GENE 1)	Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	O.I.	C.G.	H.G.
48.4	99.8	106.2	At5g17760	831644	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
46.1	99.8	31.5	At1g01010	839580	ANAC001 (Arabidopsis NAC domain containing protein 1)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.6	99.8	85.3	At3g13910	820604	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
43.3	99.8	188.5	At2g30550	817604	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV	O.I.	C.G.	H.G.
43.2	99.8	77.6	At3g14060	820620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cell wall, cytoplasm;P	O.I.	C.G.	H.G.
42.5	99.8	76.2	At4g17070	827415	peptidyl-prolyl cis-trans isomerase	F:peptidyl-prolyl cis-trans isomerase activity;P:response to oxidative stress;C:unknown;PBMO	O.I.	C.G.	H.G.
41.5	99.8	113.1	At1g74710	843810	isochorismate synthase 1 (ICS1) / isochorismate mutase	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).	O.I.	C.G.	H.G.
41.3	99.8	35.1	At5g43910	834413	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
38.9	99.8	92.3	At1g35230	840412	AGP5 (ARABINOGALACTAN-PROTEIN 5)	Encodes arabinogalactan-protein (AGP5).	O.I.	C.G.	H.G.
38.0	99.8	50.8	At4g23060	828405	IQD22 (IQ-domain 22)	F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMF	O.I.	C.G.	H.G.
37.6	99.7	129.3	At1g07000	837210	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
36.8	99.7	73.5	At4g23210	828420	protein kinase family protein	Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	O.I.	C.G.	H.G.
36.5	99.7	64.3	At5g25250	832596	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV	O.I.	C.G.	H.G.
36.1	99.7	103.3	At1g72940	843625	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB	O.I.	C.G.	H.G.
34.9	99.7	352.9	At4g12490	826861	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA	O.I.	C.G.	H.G.
33.5	99.7	108.1	At2g17220	816227	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
32.8	99.7	126.1	At3g44720	823601	ADT4 (arogenate dehydratase 4)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.
32.4	99.7	18.0	At4g38560	830013	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV	O.I.	C.G.	H.G.
30.5	99.7	44.0	At1g01340	838832	ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
30.2	99.7	53.4	At4g02880	828150	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
29.4	99.7	52.5	At3g01820	821071	adenylate kinase family protein	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
27.9	99.7	162.9	At3g11340	820307	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
27.7	99.7	95.8	At4g39030	830058	EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)	Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.	O.I.	C.G.	H.G.
26.3	99.7	38.3	At5g10190	830883	transporter-related	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
25.3	99.6	269.9	At3g50480	824212	HR4 (HOMOLOG OF RPW8 4)	Homolog of RPW8	O.I.	C.G.	H.G.
24.8	99.6	28.5	At2g04430	814983	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	F:hydrolase activity;P:unknown;C:cytosol;BOMPAFV	O.I.	C.G.	H.G.
24.7	99.6	36.7	At2g28570	817405	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
24.5	99.6	49.8	At5g38895	833881	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MPOFV	O.I.	C.G.	H.G.
24.2	99.6	56.9	At4g35600	829712	CONNEXIN 32	plant-type connexin (gap junction-type protein), a component of plasmodesmata	O.I.	C.G.	H.G.
23.9	99.6	36.4	At1g12940	837852	ATNRT2.5 (nitrate transporter2.5)	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
23.5	99.6	96.7	At1g67810	843107	SUFE2 (SULFUR E 2)	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.	O.I.	C.G.	H.G.
23.5	99.6	52.5	At4g29740	829096	CKX4 (CYTOKININ OXIDASE 4)	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
23.0	99.6	54.1	At1g62420	842540	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.8	99.6	144.4	At1g13990	837959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
22.7	99.6	58.6	At3g25890	822185	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
22.6	99.6	219.6	At5g10380	830902	RING1	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.	O.I.	C.G.	H.G.
22.4	99.6	222.3	At5g24210	832488	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.2	99.6	111.8	At2g38290	818409	ATAMT2 (AMMONIUM TRANSPORTER 2)	encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.	O.I.	C.G.	H.G.
21.6	99.6	37.9	At4g02220	828106	zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein	F:zinc ion binding;P:unknown;C:cytoplasm;MOFP	O.I.	C.G.	H.G.
21.0	99.6	29.6	At2g43320	818933	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB	O.I.	C.G.	H.G.
21.0	99.6	14.2	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.9	99.6	63.9	At3g50260	824188	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
20.7	99.6	42.9	At2g38000	818378	chaperone protein dnaJ-related	F:unknown;P:unknown;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
20.5	99.6	11.4	At3g57950	824964	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
20.4	99.6	24.2	At3g13100	820498	ATMRP7	member of MRP subfamily	O.I.	C.G.	H.G.
20.1	99.6	29.0	At1g72890	843620	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
20.0	99.6	87.4	At1g73800		-	-	O.I.	C.G.	H.G.
19.9	99.6	54.6	At4g00700	828031	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
19.9	99.6	21.2	At3g57460	824913	catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding	F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPO	O.I.	C.G.	H.G.
19.8	99.6	238.6	At5g26340	832703	MSS1	Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.	O.I.	C.G.	H.G.
19.6	99.6	45.1	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.5	99.6	209.7	At4g23470	828446	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
19.5	99.6	32.4	At4g38260	829983	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
18.9	99.5	302.5	At5g40780	834078	LHT1	Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.	O.I.	C.G.	H.G.
18.9	99.5	50.2	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
18.8	99.5	98.9	At3g46510	823804	PUB13 (PLANT U-BOX 13)	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	O.I.	C.G.	H.G.
18.4	99.5	36.0	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
18.3	99.5	268.4	At2g26400	817180	ATARD3 (ACIREDUCTONE DIOXYGENASE 3)	Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family.	O.I.	C.G.	H.G.
17.7	99.5	67.5	At3g45040	823639	phosphatidate cytidylyltransferase family protein	Encodes a putative dolichol kinase.	O.I.	C.G.	H.G.
17.4	99.5	17.0	At5g47130	834759	Bax inhibitor-1 family / BI-1 family	F:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFV	O.I.	C.G.	H.G.
17.3	99.5	71.3	At2g47800	819392	ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4)	Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim.	O.I.	C.G.	H.G.
17.2	99.5	31.9	At1g70690	843406	HWI1 (HOPW1-1-INDUCED GENE1)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
17.0	99.5	78.4	At4g03030	828110	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVF	O.I.	C.G.	H.G.
16.7	99.5	27.5	At4g36710	829824	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
16.6	99.5	36.4	At5g61060	836227	HDA05 (HISTONE DEACETYLASE 5)	Encodes a member of the histone deacetylase family.	O.I.	C.G.	H.G.
16.4	99.5	134.8	At4g33300	829466	ADR1-L1 (ADR1-like 1)	F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFA	O.I.	C.G.	H.G.
16.3	99.5	321.3	At2g41410	818739	calmodulin, putative	F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
16.3	99.5	106.3	At5g22000	832260	RHF2A (RING-H2 GROUP F2A)	encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.	O.I.	C.G.	H.G.
16.1	99.5	219.2	At3g56400	824807	WRKY70	member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.	O.I.	C.G.	H.G.
16.1	99.5	149.5	At3g01540	821116	DRH1 (DEAD BOX RNA HELICASE 1)	RNA HELICASE DRH1	O.I.	C.G.	H.G.
16.0	99.5	64.8	At4g00330	828125	CRCK2	high overall homology to CRCK1	O.I.	C.G.	H.G.
15.9	99.5	47.4	At1g34750	840379	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
15.8	99.5	20.7	At1g34420	840345	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
15.7	99.5	67.6	At5g58220	835934	TTL (Transthyretin-Like protein)	F:steroid binding;P:regulation of cell growth by extracellular stimulus, brassinosteroid mediated signaling;C:extrinsic to internal side of plasma membrane, peroxisome;BOMFPA	O.I.	C.G.	H.G.
15.6	99.5	19.9	At1g10210	837559	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	Encodes ATMPK1.	O.I.	C.G.	H.G.
15.4	99.5	115.6	At4g17900	827514	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.4	99.5	54.2	At2g47420	819355	dimethyladenosine transferase, putative	F:rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity;P:rRNA modification, rRNA processing;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
15.4	99.5	14.6	At5g67190	836854	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
15.3	99.4	208.0	At1g69840	843320	band 7 family protein	F:unknown;P:biological_process unknown;C:plasma membrane, chloroplast, vacuole;BOMFPAV	O.I.	C.G.	H.G.
15.2	99.4	77.9	At1g48320	841252	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
15.1	99.4	200.9	At3g05500	819715	rubber elongation factor (REF) family protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
15.1	99.4	24.8	At1g61260	842420	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
15.0	99.4	42.2	At5g07360	830627	amidase family protein	F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
14.9	99.4	65.1	At2g01650	814694	PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2)	encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.	O.I.	C.G.	H.G.
14.9	99.4	19.8	At1g80450	844384	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM128660
Assay name	Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1
GSE experiment	GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Microarray experiments to specifically-expressed genes

GSM ID GSM128660 Assay name Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

GSM ID GSM128660

Assay name Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1

GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction