Microarray experiments to specifically-expressed genes

GSM ID GSM128657
Assay name Underwood_1-10_Mock-Inoculum-24h_Rep1_ATH1
GSE experiment GSE5520: Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
29.699.738.2At3g01490821136protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
24.299.636.2At2g42040818804-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
23.699.658.6At1g18620838443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
20.799.6124.0At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
20.499.674.0At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
19.599.616.6At1g75250843862ATRL6 (ARABIDOPSIS RAD-LIKE 6)F:transcription factor activity;P:regulation of transcription;C:unknown;PMOO.I.C.G.H.G.
18.999.529.9At3g50750824239brassinosteroid signalling positive regulator-relatedF:transcription regulator activity;P:biological_process unknown;C:vacuole;OPFMBO.I.C.G.H.G.
18.799.516.2At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
18.299.539.8At3g58120824981BZIP61Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
18.099.554.4At1g23080838916PIN7 (PIN-FORMED 7)Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
17.399.5291.9At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
17.299.550.9At1g75100843847JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
17.199.519.5At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
16.999.5151.4At2g40610818656ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
16.999.581.3At1g14280837989PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.O.I.C.G.H.G.
16.899.584.1At2g18300816346basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
16.499.5163.3At5g16030831460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
16.499.535.1At3g19850821522phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PO.I.C.G.H.G. (phytochrome kinase substrate 4)Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.O.I.C.G.H.G.
15.799.596.2At1g14920838057GAI (GIBBERELLIC ACID INSENSITIVE)Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.O.I.C.G.H.G.
15.699.561.9At5g28020832872CYSD2 (CYSTEINE SYNTHASE D2)Encodes cysteine synthase CysD2.O.I.C.G.H.G.
15.499.596.9At5g02760831234protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAVO.I.C.G.H.G.
15.099.436.0At1g73830843719BEE3 (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOO.I.C.G.H.G.
14.799.4107.6At2g30600817610BTB/POZ domain-containing proteinF:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
13.899.459.5At5g18630831981lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;PFOBMVO.I.C.G.H.G.
13.599.45.3At2g42380818839bZIP transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
13.499.446.1At4g01330828117ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
12.999.342.4At4g16990827407RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMBO.I.C.G.H.G.
12.899.362.5At5g12050831078unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
12.499.3113.3At1g63800842683UBC5 (ubiquitin-conjugating enzyme 5)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
12.399.3139.5At1g52190841649proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMFOO.I.C.G.H.G.
12.199.3136.7At1g80180844358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
11.999.3393.0At3g16770820929ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.O.I.C.G.H.G.
11.999.325.8At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.397.6At4g19420827683pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBAO.I.C.G.H.G.
11.799.333.7At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVO.I.C.G.H.G.
11.699.3113.9At5g57655835871xylose isomerase family proteinF:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMFO.I.C.G.H.G.
11.699.345.1At4g08470826406MAPKKK10member of MEKK subfamilyO.I.C.G.H.G.
11.599.336.8At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
11.599.331.3At5g43270834345SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2)member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, theO.I.C.G.H.G.
11.599.326.1At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVO.I.C.G.H.G.
11.499.336.9At1g10020837537unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
11.499.311.9At3g29670822645transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
11.399.339.3At2g18290816345anaphase-promoting complex, subunit 10 family / APC10 familyF:protein binding;P:regulation of mitotic metaphase/anaphase transition;C:anaphase-promoting complex;MFOPO.I.C.G.H.G. protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G. P450 monooxygenaseO.I.C.G.H.G.
10.999.2226.7At1g74670843806gibberellin-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to gibberellin stimulus, response to sucrose stimulus, gibberellic acid mediated signaling, response to glucose stimulus;C:endomembrane system;PO.I.C.G.H.G.
10.999.2125.6At5g02840831766LCL1 (LHY/CCA1-like 1)CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
10.999.234.4At2g35060818071KUP11potassium transporterO.I.C.G.H.G.
10.699.253.1At4g30993829225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.599.258.1At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
10.499.241.9At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
10.499.210.0At1g19510838537ATRL5 (ARABIDOPSIS RAD-LIKE 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
10.399.2143.2At5g40450834043unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAVO.I.C.G.H.G.
10.399.232.5At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G. repressor of E1A-stimulated genes (CREG) familyF:FMN binding;P:biological_process unknown;C:vacuole;MBOPFO.I.C.G.H.G. heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G. hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMAO.I.C.G.H.G. transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOAO.I.C.G.H.G.
9.799.149.6At3g57410824908VLN3 (VILLIN 3)Encodes a protein with high homology to animal villin.O.I.C.G.H.G.
9.799.119.9At3g26220822223CYP71B3cytochrome P450 monooxygenaseO.I.C.G.H.G.
9.799.113.9At1g78270844162AtUGT85A4 (UDP-glucosyl transferase 85A4)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFOO.I.C.G.H.G.
9.699.121.3At2g23130816845AGP17 (ARABINOGALACTAN PROTEIN 17)AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.O.I.C.G.H.G.
9.599.1168.5At2g39570818542ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
9.599.185.6At1g58180842185carbonic anhydrase family protein / carbonate dehydratase family proteinF:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMAO.I.C.G.H.G.
9.599.151.4At5g28770832990BZO2H3bZIP protein BZO2H3 mRNA, partial cdsO.I.C.G.H.G. protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
8.999.037.7At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.999.022.7At2g45530819161zinc finger (C3HC4-type RING finger) family proteinF:zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
8.899.0242.0At5g49730835036ATFRO6 (FERRIC REDUCTION OXIDASE 6)Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.O.I.C.G.H.G.
8.899.0115.4At3g45780823721PHOT1 (PHOTOTROPIN 1)Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.O.I.C.G.H.G.
8.899.042.7At4g08920826470CRY1 (CRYPTOCHROME 1)Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.O.I.C.G.H.G.
8.799.0246.8At1g11260837667STP1 (SUGAR TRANSPORTER 1)Encodes a H+/hexose cotransporter.O.I.C.G.H.G.
8.699.0263.2At5g49360834996BXL1 (BETA-XYLOSIDASE 1)Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
8.699.084.9At5g63800836500MUM2 (MUCILAGE-MODIFIED 2)Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35O.I.C.G.H.G.

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