CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM109111

Assay name vte1-1(Col-0) 1 day, biological rep2

GSE experiment GSE4847: Expression data from tocopherol deficient seedlings of Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.7 99.9 303.2 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
61.5 99.8 288.5 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
48.0 99.8 437.5 At3g02480 821185 ABA-responsive protein-related F:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMF O.I. C.G. H.G.
46.7 99.8 353.2 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
44.1 99.8 119.1 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
40.0 99.8 215.6 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
38.6 99.8 241.3 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
37.8 99.8 74.5 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, O.I. C.G. H.G.
32.3 99.7 135.3 At1g29090 839784 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
31.0 99.7 257.3 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
29.6 99.7 205.0 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
29.6 99.7 32.3 At1g72070 843538 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV O.I. C.G. H.G.
28.0 99.7 15.5 At1g01380 838096 ETC1 (ENHANCER OF TRY AND CPC 1) ETC1 is involved in trichome and root hair patterning in Arabidopsis. O.I. C.G. H.G.
27.4 99.7 480.9 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
26.6 99.7 98.8 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
26.3 99.7 188.1 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
26.2 99.7 162.5 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF O.I. C.G. H.G.
25.4 99.6 144.7 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.1 99.6 149.0 At5g06760 830565 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV O.I. C.G. H.G.
24.1 99.6 59.5 At2g23110 816843 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.4 99.6 195.1 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. O.I. C.G. H.G.
23.4 99.6 144.0 At3g14220 820640 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM O.I. C.G. H.G.
23.4 99.6 137.7 At5g56260 835725 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
23.2 99.6 81.7 At5g27820 832844 ribosomal protein L18 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM O.I. C.G. H.G.
23.2 99.6 21.8 At2g03590 814888 ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1) Encodes a member of a class of allantoin transporters. O.I. C.G. H.G.
23.0 99.6 109.6 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
21.4 99.6 103.9 At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves O.I. C.G. H.G.
21.3 99.6 18.9 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
21.1 99.6 118.7 At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
17.8 99.5 26.2 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
16.9 99.5 145.0 At2g02040 814735 PTR2 (PEPTIDE TRANSPORTER 2) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. O.I. C.G. H.G.
16.7 99.5 227.1 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
16.3 99.5 281.5 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. O.I. C.G. H.G.
16.3 99.5 131.6 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
15.8 99.5 121.0 At2g29530 817502 mitochondrial import inner membrane translocase (TIM10) Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. O.I. C.G. H.G.
15.2 99.4 203.7 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
14.4 99.4 139.6 At3g61070 825279 PEX11E member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
14.4 99.4 130.4 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
14.2 99.4 34.9 At5g59130 836031 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
13.6 99.4 42.0 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA O.I. C.G. H.G.
13.4 99.4 379.7 At1g14980 838063 CPN10 (CHAPERONIN 10) Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. O.I. C.G. H.G.
13.4 99.4 9.2 At3g14880 820717 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
13.3 99.4 127.8 At1g01300 839375 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO O.I. C.G. H.G.
13.2 99.4 40.2 At2g27775 817324 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
13.2 99.4 22.6 At5g67060 836841 HEC1 (HECATE 1) F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA O.I. C.G. H.G.
13.0 99.4 23.4 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.6 99.3 46.9 At5g38890 833880 exoribonuclease-related F:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOP O.I. C.G. H.G.
12.1 99.3 25.8 At2g34050 817966 - F:unknown;P:protein complex assembly;C:mitochondrion, chloroplast;MFOP O.I. C.G. H.G.
12.0 99.3 130.8 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
11.9 99.3 23.5 At3g48700 824031 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
11.8 99.3 198.4 At1g54000 841838 myrosinase-associated protein, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFM O.I. C.G. H.G.
11.8 99.3 46.8 At3g62810 825456 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
11.6 99.3 153.7 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 O.I. C.G. H.G.
11.6 99.3 21.1 At3g15357 820774 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA O.I. C.G. H.G.
11.3 99.3 155.2 At2g19750 816494 40S ribosomal protein S30 (RPS30A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV O.I. C.G. H.G.
11.3 99.3 81.4 At1g60960 842387 IRT3 member of Fe(II) transporter isolog family O.I. C.G. H.G.
11.2 99.2 277.0 At3g47370 823891 40S ribosomal protein S20 (RPS20B) F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPF O.I. C.G. H.G.
11.1 99.2 102.3 At5g66780 836811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.1 99.2 42.8 At1g26740 839215 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:large ribosomal subunit;PBFO O.I. C.G. H.G.
11.0 99.2 17.1 At5g24990 832569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
10.8 99.2 15.2 At5g04000 830279 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 69.7 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.6 99.2 126.6 At5g48760 834934 60S ribosomal protein L13A (RPL13aD) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;BOMAPF O.I. C.G. H.G.
10.6 99.2 7.5 At3g48130 3769680 - ribosomal protein L13 homolog O.I. C.G. H.G.
10.4 99.2 211.4 At5g22440 832305 60S ribosomal protein L10A (RPL10aC) F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;BOMPAF O.I. C.G. H.G.
10.4 99.2 87.1 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
10.3 99.2 105.5 At4g30810 829204 scpl29 (serine carboxypeptidase-like 29) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
10.2 99.2 152.7 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. O.I. C.G. H.G.
10.2 99.2 81.7 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
10.2 99.2 31.0 At1g70350 843371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.1 99.2 101.0 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
10.1 99.2 86.3 At1g49410 841365 TOM6 (translocase of the outer mitochondrial membrane 6) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
10.0 99.2 614.1 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO O.I. C.G. H.G.
9.8 99.1 229.0 At3g55280 824694 RPL23AB (RIBOSOMAL PROTEIN L23AB) 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA O.I. C.G. H.G.
9.8 99.1 227.2 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
9.4 99.1 70.0 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
9.4 99.1 9.3 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
9.3 99.1 21.0 At5g45920 834632 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
9.3 99.1 12.4 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. O.I. C.G. H.G.
9.1 99.1 161.5 At5g20950 832220 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAM O.I. C.G. H.G.
9.1 99.1 7.8 At5g57080 835812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.9 99.0 72.7 At3g52040 824367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.9 99.0 18.1 At1g08220 837343 - F:molecular_function unknown;P:mitochondrial proton-transporting ATP synthase complex assembly;C:mitochondrial inner membrane;FPOAM O.I. C.G. H.G.
8.8 99.0 238.5 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
8.8 99.0 11.3 At3g53220 824488 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
8.8 99.0 3.4 At5g03310 831879 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
8.7 99.0 323.4 At3g59540 825123 60S ribosomal protein L38 (RPL38B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
8.7 99.0 26.9 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
8.7 99.0 19.4 At4g16230 827317 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
8.7 99.0 11.9 At5g41650 834167 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO O.I. C.G. H.G.
8.6 99.0 350.6 At5g47700 834821 60S acidic ribosomal protein P1 (RPP1C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB O.I. C.G. H.G.
8.6 99.0 314.2 At2g05710 815120 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
8.6 99.0 46.2 At3g47800 823934 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
72.7	99.9	303.2	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
61.5	99.8	288.5	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
48.0	99.8	437.5	At3g02480	821185	ABA-responsive protein-related	F:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
46.7	99.8	353.2	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
44.1	99.8	119.1	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
40.0	99.8	215.6	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.6	99.8	241.3	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
37.8	99.8	74.5	At5g13870	831233	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	EXGT-A4, endoxyloglucan transferase,	O.I.	C.G.	H.G.
32.3	99.7	135.3	At1g29090	839784	peptidase C1A papain family protein	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
31.0	99.7	257.3	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
29.6	99.7	205.0	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
29.6	99.7	32.3	At1g72070	843538	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV	O.I.	C.G.	H.G.
28.0	99.7	15.5	At1g01380	838096	ETC1 (ENHANCER OF TRY AND CPC 1)	ETC1 is involved in trichome and root hair patterning in Arabidopsis.	O.I.	C.G.	H.G.
27.4	99.7	480.9	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
26.6	99.7	98.8	At5g02260	831736	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
26.3	99.7	188.1	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
26.2	99.7	162.5	At4g01700	828131	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF	O.I.	C.G.	H.G.
25.4	99.6	144.7	At2g47780	819390	rubber elongation factor (REF) protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.1	99.6	149.0	At5g06760	830565	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV	O.I.	C.G.	H.G.
24.1	99.6	59.5	At2g23110	816843	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.4	99.6	195.1	At2g22780	816808	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)	encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	O.I.	C.G.	H.G.
23.4	99.6	144.0	At3g14220	820640	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM	O.I.	C.G.	H.G.
23.4	99.6	137.7	At5g56260	835725	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
23.2	99.6	81.7	At5g27820	832844	ribosomal protein L18 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM	O.I.	C.G.	H.G.
23.2	99.6	21.8	At2g03590	814888	ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)	Encodes a member of a class of allantoin transporters.	O.I.	C.G.	H.G.
23.0	99.6	109.6	At4g16210	827314	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
21.4	99.6	103.9	At1g64970	842805	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves	O.I.	C.G.	H.G.
21.3	99.6	18.9	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
21.1	99.6	118.7	At2g37640	818341	EXP3	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
17.8	99.5	26.2	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
16.9	99.5	145.0	At2g02040	814735	PTR2 (PEPTIDE TRANSPORTER 2)	Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.	O.I.	C.G.	H.G.
16.7	99.5	227.1	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
16.3	99.5	281.5	At5g11520	831024	ASP3 (ASPARTATE AMINOTRANSFERASE 3)	Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.	O.I.	C.G.	H.G.
16.3	99.5	131.6	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
15.8	99.5	121.0	At2g29530	817502	mitochondrial import inner membrane translocase (TIM10)	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.	O.I.	C.G.	H.G.
15.2	99.4	203.7	At4g32460	829381	-	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
14.4	99.4	139.6	At3g61070	825279	PEX11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
14.4	99.4	130.4	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
14.2	99.4	34.9	At5g59130	836031	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
13.6	99.4	42.0	At3g23800	821962	SBP3 (selenium-binding protein 3)	F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA	O.I.	C.G.	H.G.
13.4	99.4	379.7	At1g14980	838063	CPN10 (CHAPERONIN 10)	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	O.I.	C.G.	H.G.
13.4	99.4	9.2	At3g14880	820717	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
13.3	99.4	127.8	At1g01300	839375	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO	O.I.	C.G.	H.G.
13.2	99.4	40.2	At2g27775	817324	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
13.2	99.4	22.6	At5g67060	836841	HEC1 (HECATE 1)	F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA	O.I.	C.G.	H.G.
13.0	99.4	23.4	At3g18510	821381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.6	99.3	46.9	At5g38890	833880	exoribonuclease-related	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOP	O.I.	C.G.	H.G.
12.1	99.3	25.8	At2g34050	817966	-	F:unknown;P:protein complex assembly;C:mitochondrion, chloroplast;MFOP	O.I.	C.G.	H.G.
12.0	99.3	130.8	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
11.9	99.3	23.5	At3g48700	824031	ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
11.8	99.3	198.4	At1g54000	841838	myrosinase-associated protein, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFM	O.I.	C.G.	H.G.
11.8	99.3	46.8	At3g62810	825456	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
11.6	99.3	153.7	At2g30970	817648	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	ASPARTATE AMINOTRANSFERASE 1	O.I.	C.G.	H.G.
11.6	99.3	21.1	At3g15357	820774	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA	O.I.	C.G.	H.G.
11.3	99.3	155.2	At2g19750	816494	40S ribosomal protein S30 (RPS30A)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV	O.I.	C.G.	H.G.
11.3	99.3	81.4	At1g60960	842387	IRT3	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
11.2	99.2	277.0	At3g47370	823891	40S ribosomal protein S20 (RPS20B)	F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPF	O.I.	C.G.	H.G.
11.1	99.2	102.3	At5g66780	836811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.1	99.2	42.8	At1g26740	839215	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:large ribosomal subunit;PBFO	O.I.	C.G.	H.G.
11.0	99.2	17.1	At5g24990	832569	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
10.8	99.2	15.2	At5g04000	830279	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	69.7	At5g46950	834741	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.6	99.2	126.6	At5g48760	834934	60S ribosomal protein L13A (RPL13aD)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;BOMAPF	O.I.	C.G.	H.G.
10.6	99.2	7.5	At3g48130	3769680	-	ribosomal protein L13 homolog	O.I.	C.G.	H.G.
10.4	99.2	211.4	At5g22440	832305	60S ribosomal protein L10A (RPL10aC)	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;BOMPAF	O.I.	C.G.	H.G.
10.4	99.2	87.1	At5g62490	836369	ATHVA22B	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
10.3	99.2	105.5	At4g30810	829204	scpl29 (serine carboxypeptidase-like 29)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
10.2	99.2	152.7	At3g06860	819870	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.	O.I.	C.G.	H.G.
10.2	99.2	81.7	At1g29980	839877	-	F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
10.2	99.2	31.0	At1g70350	843371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.1	99.2	101.0	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
10.1	99.2	86.3	At1g49410	841365	TOM6 (translocase of the outer mitochondrial membrane 6)	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
10.0	99.2	614.1	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	O.I.	C.G.	H.G.
9.8	99.1	229.0	At3g55280	824694	RPL23AB (RIBOSOMAL PROTEIN L23AB)	60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA	O.I.	C.G.	H.G.
9.8	99.1	227.2	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
9.4	99.1	70.0	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
9.4	99.1	9.3	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
9.3	99.1	21.0	At5g45920	834632	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
9.3	99.1	12.4	At2g40220	818614	ABI4 (ABA INSENSITIVE 4)	encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	O.I.	C.G.	H.G.
9.1	99.1	161.5	At5g20950	832220	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAM	O.I.	C.G.	H.G.
9.1	99.1	7.8	At5g57080	835812	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.9	99.0	72.7	At3g52040	824367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.9	99.0	18.1	At1g08220	837343	-	F:molecular_function unknown;P:mitochondrial proton-transporting ATP synthase complex assembly;C:mitochondrial inner membrane;FPOAM	O.I.	C.G.	H.G.
8.8	99.0	238.5	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
8.8	99.0	11.3	At3g53220	824488	thioredoxin family protein	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
8.8	99.0	3.4	At5g03310	831879	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
8.7	99.0	323.4	At3g59540	825123	60S ribosomal protein L38 (RPL38B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
8.7	99.0	26.9	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
8.7	99.0	19.4	At4g16230	827317	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
8.7	99.0	11.9	At5g41650	834167	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
8.6	99.0	350.6	At5g47700	834821	60S acidic ribosomal protein P1 (RPP1C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB	O.I.	C.G.	H.G.
8.6	99.0	314.2	At2g05710	815120	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
8.6	99.0	46.2	At3g47800	823934	aldose 1-epimerase family protein	F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.

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GSM ID	GSM109111
Assay name	vte1-1(Col-0) 1 day, biological rep2
GSE experiment	GSE4847: Expression data from tocopherol deficient seedlings of Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM109111 Assay name vte1-1(Col-0) 1 day, biological rep2 GSE experiment GSE4847: Expression data from tocopherol deficient seedlings of Arabidopsis

GSM ID GSM109111

Assay name vte1-1(Col-0) 1 day, biological rep2

GSE experiment GSE4847: Expression data from tocopherol deficient seedlings of Arabidopsis