Microarray experiments to specifically-expressed genes

GSM ID GSM106969
Assay name opr3_OPDA_22 hrs_Rep2
GSE experiment GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
394.1100.0164.6At3g07830819974polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
370.0100.0171.8At5g24655832537LSU4 (RESPONSE TO LOW SULFUR 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
367.6100.092.4At3g07840819975polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
286.7100.0250.5At2g29790817529-Encodes a Maternally expressed gene (MEG) family protein [pseudogene]O.I.C.G.H.G.
275.5100.0395.9At4g25040828607integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
240.9100.0184.4At5g42170834222carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFVMO.I.C.G.H.G.
233.4100.0445.4At4g11760826782LCR17 (Low-molecular-weight cysteine-rich 17)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
213.6100.079.0At2g15340816025glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBFOPAO.I.C.G.H.G.
212.7100.0315.2At4g13230826939late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOFO.I.C.G.H.G.
204.7100.0520.8At3g28840822516unknown proteinF:unknown;P:unknown;C:endomembrane system;BOMPFVAO.I.C.G.H.G.
204.4100.074.0At2g19330816450leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:chloroplast;MPBOFAVO.I.C.G.H.G.
202.2100.0353.7At1g52680841700late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
199.5100.0524.1At5g53820835463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
186.2100.068.9At2g15535816046LCR10 (Low-molecular-weight cysteine-rich 10)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
184.5100.066.2At2g20430816562RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.O.I.C.G.H.G.
176.5100.0216.4At3g04620819620nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
175.0100.073.4At4g17690827489peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
173.3100.081.7At5g46200834662unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
170.8100.0301.5At5g59120836030ATSBT4.13 (ARABIDOPSIS THALIANA SUBTILASE 4.13)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
166.8100.092.4At3g51070824271dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
166.7100.0101.4At3g12660820446FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR)fasciclin-like arabinogalactan-protein, family (FLA14)O.I.C.G.H.G.
156.799.957.9At2g33670817932MLO5 (MILDEW RESISTANCE LOCUS O 5)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
142.999.974.3At1g77980844133AGL66 (AGAMOUS-LIKE 66)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL66 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.O.I.C.G.H.G.
142.599.9173.9At5g62850836406AtVEX1 (VEGETATIVE CELL EXPRESSED1)Encodes a protein that is expressed in vegetative cells of pollen.O.I.C.G.H.G.
141.799.9727.5At3g28790822511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
140.699.9563.9At3g28980822538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
140.199.946.9At3g28770822509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
139.899.9348.3At3g28810822513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVAO.I.C.G.H.G.
136.499.980.0At1g57550842130hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BPFMOO.I.C.G.H.G.
135.799.9726.5At3g28830822515unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
135.699.959.5At2g04675815010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
135.199.9167.9At5g46940834740invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
133.299.9302.6At3g28780822510unknown proteinF:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVAO.I.C.G.H.G.
131.099.9123.4At1g04670839451unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PAFO.I.C.G.H.G.
128.599.9115.4At3g10460820210self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
127.199.9161.4At3g01250821184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPO.I.C.G.H.G.
125.299.9237.6At2g28355817383LCR5 (Low-molecular-weight cysteine-rich 5)F:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
124.899.923.7At1g68090843137ANN5Encodes a calcium-binding protein annexin (AnnAt5).O.I.C.G.H.G.
123.199.9267.2At2g46860819299AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)Encodes a protein that might have inorganic pyrophosphatase activity.O.I.C.G.H.G.
121.799.9154.6At1g73630843697calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
119.099.9152.1At2g40460818640proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOFO.I.C.G.H.G.
117.599.957.8At3g46750823828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
117.399.9274.2At2g19000816417-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
117.099.9291.9At1g80660844405AHA9F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAVO.I.C.G.H.G.
115.899.936.1At5g61700836292ATATH16member of ATH subfamilyO.I.C.G.H.G.
113.299.938.9At1g13130837870glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BPFOO.I.C.G.H.G.
112.399.938.5At5g02720831821unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
112.199.9225.2At4g01470828051TIP1Encodes AtTIP1;3, functions as water and urea channels in pollen.O.I.C.G.H.G.
111.699.960.7At2g10970815562invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
110.499.917.5At3g23350821916-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
108.899.930.8At1g79250844265AGC1.7 (AGC KINASE 1.7)F:kinase activity;P:pollen tube growth, unidimensional cell growth;C:unknown;MOPFBVAO.I.C.G.H.G.
107.999.942.1At1g16360838205LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinF:unknown;P:biological_process unknown;C:membrane;MOFPO.I.C.G.H.G.
107.899.927.5At2g18080816320EDA2 (embryo sac development arrest 2)F:serine-type peptidase activity;P:proteolysis, megagametogenesis;C:endomembrane system;MOFPBO.I.C.G.H.G.
107.099.9221.5At5g44300834453dormancy/auxin associated family proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
106.699.964.8At1g15460838116BOR4 (REQUIRES HIGH BORON 4)Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.O.I.C.G.H.G.
106.399.954.8At3g17220820981PMEI2Pectin methylesterase inhibitor AtPMEI2. Inactivates AtPPME1 in vitro. Localized to Brefeldin A-induced compartments, and was found in FYVE-induced endosomal aggregates.O.I.C.G.H.G.
105.499.9106.8At1g26480839189GRF12 (GENERAL REGULATORY FACTOR 12)14-3-3 protein GF14iota (grf12)O.I.C.G.H.G.
101.799.948.3At1g22130838818AGL104 (AGAMOUS-LIKE 104)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.O.I.C.G.H.G.
100.099.9549.1At4g13560826989UNE15 (unfertilized embryo sac 15)F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
99.699.9136.1At3g05180819682GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFMOO.I.C.G.H.G.
99.399.9842.5At1g61563842451RALFL8 (ralf-like 8)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
95.099.945.6At3g01350819616proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFO.I.C.G.H.G.
94.999.9817.8At3g07850819976exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAO.I.C.G.H.G.
91.999.9535.8At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
91.699.921.1At1g42560840861MLO9 (MILDEW RESISTANCE LOCUS O 9)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
91.299.9119.8At1g71680843494amino acid transmembrane transporterF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBVO.I.C.G.H.G.
91.299.9115.7At2g16890816190UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PO.I.C.G.H.G.
90.499.971.4At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.O.I.C.G.H.G.
90.499.923.6At3g02440821154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBO.I.C.G.H.G.
90.299.9524.2At5g38760833867unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
90.199.9241.3At2g19770816496PRF5 (PROFILIN5)Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.O.I.C.G.H.G.
89.899.915.9At2g30240817574ATCHX13Encodes a plasma membrane localized potassium transporter.O.I.C.G.H.G.
89.399.955.3At1g43630840947unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
89.299.950.5At2g48150819427ATGPX4 (GLUTATHIONE PEROXIDASE 4)Encodes glutathione peroxidase.O.I.C.G.H.G.
88.699.939.3At4g39130830068dehydrin family proteinF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMOO.I.C.G.H.G.
87.899.9320.0At2g07560815329AHA6 (Arabidopsis H(+)-ATPase 6)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVO.I.C.G.H.G.
87.899.9100.2At1g74000843738SS3 (STRICTOSIDINE SYNTHASE 3)encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.O.I.C.G.H.G.
86.099.987.7At3g19090821444RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFBO.I.C.G.H.G.
85.899.962.1At1g12070837759Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOO.I.C.G.H.G.
85.199.926.5At5g19610832081sec7 domain-containing proteinF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBO.I.C.G.H.G.
84.199.9277.2At5g07420830633pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
83.399.966.4At2g22950816826calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
83.099.957.3At1g62450842543Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOO.I.C.G.H.G.
82.499.9601.4At3g20865821635AGP40 (arabinogalactan-protein 40)Encodes a putative arabinogalactan-protein (AGP40).O.I.C.G.H.G.
81.299.9667.2At2g47030819317VGDH1F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
80.899.9490.5At1g69940843331PPME1Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.O.I.C.G.H.G.
80.099.9118.2At2g16750816176protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
79.599.921.8At3g55190824685esterase/lipase/thioesterase family proteinF:catalytic activity;P:glycerol biosynthetic process;C:cellular_component unknown;BOPMFVAO.I.C.G.H.G.
79.499.985.8At4g31330829260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
78.799.933.5At3g03080821128NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
78.199.9644.9At3g07820819973polygalacturonase 3 (PGA3) / pectinaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
78.099.9125.0At4g28000828913ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
77.399.9590.9At3g01270821142pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
77.299.922.7At2g45610819169hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAVO.I.C.G.H.G.
76.199.9501.2At1g29140839788pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
75.999.9482.1At1g55570842006sks12 (SKU5 Similar 12)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
72.799.9187.6At5g09550830814RAB GDP-dissociation inhibitorF:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
71.599.9177.2At1g35490840442bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMOFBO.I.C.G.H.G.
70.999.952.5At1g26320839174NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
70.699.9716.2At3g28750822507unknown proteinF:unknown;P:unknown;C:endomembrane system;POO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage