Microarray experiments to specifically-expressed genes

GSM ID GSM106916
Assay name opr3_JA_22 hrs_Rep2
GSE experiment GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1306.4100.0113.3At4g16730827376lyase/ magnesium ion bindingF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
895.6100.0144.2At3g07840819975polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
858.8100.0223.0At4g34510829602KCS17 (3-KETOACYL-COA SYNTHASE 17)Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
840.6100.0288.3At4g25010828604nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
774.0100.0165.7At3g60780825249unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
647.7100.0227.3At5g24655832537LSU4 (RESPONSE TO LOW SULFUR 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
502.4100.0244.5At3g11430820316GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5)Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester.O.I.C.G.H.G.
476.4100.0151.1At3g06490819827MYB108 (myb domain protein 108)putative transcription factor MYB108 (MYB108) mRNA,O.I.C.G.H.G.
441.7100.0116.7At4g17690827489peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
414.5100.0110.1At2g15340816025glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBFOPAO.I.C.G.H.G.
388.0100.0200.3At3g53510824519ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
386.2100.0393.4At1g77590844094LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.O.I.C.G.H.G.
382.4100.0326.7At3g22910821863calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
334.0100.072.4At3g28770822509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
322.0100.0144.9At4g13790827013auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;POO.I.C.G.H.G.
318.6100.073.8At2g19010816418GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
299.3100.0143.4At3g07830819974polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
281.3100.0170.8At3g10460820210self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
275.0100.069.2At4g39130830068dehydrin family proteinF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMOO.I.C.G.H.G.
274.9100.080.4At1g75300843867isoflavone reductase, putativeencodes a protein whose sequence is similar to an isoflavone reductaseO.I.C.G.H.G.
259.0100.0238.5At2g45580819166CYP76C3member of CYP76CO.I.C.G.H.G.
254.8100.094.2At3g57510824918ADPG1Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.O.I.C.G.H.G.
225.4100.0380.2At2g19000816417-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
221.1100.0208.4At1g73630843697calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
207.4100.0376.1At1g73220843656AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOAO.I.C.G.H.G.
207.4100.0265.8At5g65870836716ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
198.5100.080.8At5g40350834033MYB24 (myb domain protein 24)Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. O.I.C.G.H.G.
192.1100.0148.2At1g74000843738SS3 (STRICTOSIDINE SYNTHASE 3)encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.O.I.C.G.H.G.
189.1100.0567.7At4g24380828540unknown proteinF:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOBO.I.C.G.H.G.
178.2100.071.2At3g46750823828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
174.2100.0156.3At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
169.3100.0171.7At3g60570825228ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
164.8100.0110.2At4g15980827282pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:apoplast, plant-type cell wall;BMOPFAVO.I.C.G.H.G.
162.599.973.3At2g10970815562invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
161.699.9200.1At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POO.I.C.G.H.G.
159.999.9197.2At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.
153.399.9166.8At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVO.I.C.G.H.G.
147.599.9302.0At1g52680841700late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
142.199.9174.4At4g18395827569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
139.899.940.5At5g53030835382unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
138.899.957.5At2g20430816562RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue.O.I.C.G.H.G.
138.399.973.1At1g77980844133AGL66 (AGAMOUS-LIKE 66)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL66 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.O.I.C.G.H.G.
138.399.924.9At1g68090843137ANN5Encodes a calcium-binding protein annexin (AnnAt5).O.I.C.G.H.G.
134.399.9125.0At3g27810822401ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)Encodes a member of the R2R3-MYB transcription factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development.O.I.C.G.H.G.
133.599.9420.6At3g28840822516unknown proteinF:unknown;P:unknown;C:endomembrane system;BOMPFVAO.I.C.G.H.G.
132.699.9166.4At5g46940834740invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
132.099.9276.7At2g46860819299AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)Encodes a protein that might have inorganic pyrophosphatase activity.O.I.C.G.H.G.
131.399.987.8At5g36260833623aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOO.I.C.G.H.G.
129.099.925.1At1g42560840861MLO9 (MILDEW RESISTANCE LOCUS O 9)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
126.099.9339.2At5g07420830633pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
125.999.960.0At2g48150819427ATGPX4 (GLUTATHIONE PEROXIDASE 4)Encodes glutathione peroxidase.O.I.C.G.H.G.
125.799.927.9At3g02440821154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBO.I.C.G.H.G.
124.999.9325.9At4g11760826782LCR17 (Low-molecular-weight cysteine-rich 17)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
123.399.9216.5At1g73540843688atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFAO.I.C.G.H.G.
121.199.9136.2At3g06830819867pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAMO.I.C.G.H.G.
120.699.9155.5At4g28000828913ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
120.599.9157.2At3g01250821184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPO.I.C.G.H.G.
119.899.960.6At5g66550836787Maf family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
118.799.934.2At1g75160843853unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
117.699.9141.6At4g08290826383nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMFO.I.C.G.H.G.
116.499.955.8At2g19330816450leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:chloroplast;MPBOFAVO.I.C.G.H.G.
116.399.9672.4At3g28830822515unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
115.699.9232.4At4g13230826939late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOFO.I.C.G.H.G.
115.299.9398.3At5g53820835463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
114.999.9207.4At3g43960823513cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAFO.I.C.G.H.G.
113.999.9170.1At3g14560820682unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
113.399.975.0At4g10850826682nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
113.099.9186.0At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POO.I.C.G.H.G.
112.699.9504.7At3g28980822538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
110.699.9112.9At1g61110842404anac025 (Arabidopsis NAC domain containing protein 25)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
110.499.987.6At4g19230827663CYP707A1Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.O.I.C.G.H.G.
109.399.9177.3At5g03690831759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:pentose-phosphate shunt;C:unknown;OMBPFO.I.C.G.H.G.
106.099.952.0At2g15535816046LCR10 (Low-molecular-weight cysteine-rich 10)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
104.099.963.3At5g46200834662unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
102.599.937.0At1g13130837870glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BPFOO.I.C.G.H.G.
101.799.930.8At5g10500830914kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
100.699.924.6At3g55190824685esterase/lipase/thioesterase family proteinF:catalytic activity;P:glycerol biosynthetic process;C:cellular_component unknown;BOPMFVAO.I.C.G.H.G.
100.099.947.9At1g22130838818AGL104 (AGAMOUS-LIKE 104)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.O.I.C.G.H.G.
99.399.9103.6At1g26480839189GRF12 (GENERAL REGULATORY FACTOR 12)14-3-3 protein GF14iota (grf12)O.I.C.G.H.G.
98.699.9292.5At3g28810822513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMBFPVAO.I.C.G.H.G.
98.499.995.6At1g59640842254ZCW32A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.O.I.C.G.H.G.
97.899.9103.0At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
97.799.957.8At1g43630840947unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
97.099.917.8At5g40645834064nitrate-responsive NOI protein, putativeF:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;POO.I.C.G.H.G.
94.599.924.0At1g09155837435AtPP2-B15 (Phloem protein 2-B15)F:carbohydrate binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
93.499.9590.8At3g28790822511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
93.499.923.3At5g64690836590neurofilament triplet H protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
93.499.914.1At2g42380818839bZIP transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
93.099.9205.1At4g01470828051TIP1Encodes AtTIP1;3, functions as water and urea channels in pollen.O.I.C.G.H.G.
92.999.984.3At1g28550839755AtRABA1i (Arabidopsis Rab GTPase homolog A1i)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
92.699.939.0At1g16360838205LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinF:unknown;P:biological_process unknown;C:membrane;MOFPO.I.C.G.H.G.
92.099.944.4At2g33670817932MLO5 (MILDEW RESISTANCE LOCUS O 5)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
91.899.927.9At4g30770829200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
89.599.9519.4At4g13560826989UNE15 (unfertilized embryo sac 15)F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
88.699.963.1At1g12070837759Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOO.I.C.G.H.G.
88.599.9106.2At5g62750836396unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
86.399.935.8At3g26880822304self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
86.199.963.6At1g57550842130hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BPFMOO.I.C.G.H.G.
85.499.927.3At1g79250844265AGC1.7 (AGC KINASE 1.7)F:kinase activity;P:pollen tube growth, unidimensional cell growth;C:unknown;MOPFBVAO.I.C.G.H.G.
84.999.9105.7At3g52620824428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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