CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM106909

Assay name opr3-JA_2 hrs_Rep1

GSE experiment GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
345.8 100.0 259.3 At2g40460 818640 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF O.I. C.G. H.G.
341.6 100.0 165.4 At2g17950 816305 WUS (WUSCHEL) Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of the WUS expression domain controls the size of the stem cell population through WUS indirectly activating the expression of CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif. O.I. C.G. H.G.
249.9 100.0 106.0 At5g56330 835733 ACA8 (ALPHA CARBONIC ANHYDRASE 8) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process, cyanate metabolic process;C:unknown;MBOPFVA O.I. C.G. H.G.
246.4 100.0 103.0 At1g15360 838105 SHN1 (SHINE 1) Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2. O.I. C.G. H.G.
244.0 100.0 372.6 At4g25040 828607 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
229.8 100.0 113.0 At5g61430 836264 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
199.7 100.0 180.1 At2g23800 816912 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase O.I. C.G. H.G.
191.6 100.0 70.7 At2g04675 815010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
180.8 100.0 283.4 At1g50310 841453 STP9 (SUGAR TRANSPORTER 9) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
173.5 100.0 131.1 At2g32890 817850 RALFL17 (RALF-LIKE 17) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region. O.I. C.G. H.G.
161.9 99.9 117.1 At1g28430 839741 CYP705A24 member of CYP705A O.I. C.G. H.G.
153.4 99.9 31.0 At2g16120 816109 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
143.2 99.9 114.1 At3g05960 819766 STP6 (SUGAR TRANSPORTER 6) Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination. O.I. C.G. H.G.
141.5 99.9 114.7 At1g59640 842254 ZCW32 A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS. O.I. C.G. H.G.
135.1 99.9 248.9 At5g44300 834453 dormancy/auxin associated family protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
133.1 99.9 72.9 At2g04020 814928 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:N-terminal protein myristoylation, lipid metabolic process;C:endomembrane system;PBM O.I. C.G. H.G.
131.7 99.9 392.0 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV O.I. C.G. H.G.
131.1 99.9 166.8 At5g62850 836406 AtVEX1 (VEGETATIVE CELL EXPRESSED1) Encodes a protein that is expressed in vegetative cells of pollen. O.I. C.G. H.G.
130.9 99.9 339.6 At1g18280 838408 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POBM O.I. C.G. H.G.
127.0 99.9 100.1 At5g07510 830644 GRP14 encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers. O.I. C.G. H.G.
124.1 99.9 60.7 At3g17720 821040 pyridoxal-dependent decarboxylase family protein F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOM O.I. C.G. H.G.
122.8 99.9 299.0 At1g80660 844405 AHA9 F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAV O.I. C.G. H.G.
122.7 99.9 78.0 At4g10850 826682 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
117.7 99.9 160.5 At2g29790 817529 - Encodes a Maternally expressed gene (MEG) family protein [pseudogene] O.I. C.G. H.G.
117.6 99.9 402.4 At5g53820 835463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
117.2 99.9 177.3 At5g07540 830647 GRP16 (GLYCINE-RICH PROTEIN 16) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12). O.I. C.G. H.G.
111.4 99.9 228.1 At4g13230 826939 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOF O.I. C.G. H.G.
109.9 99.9 287.5 At4g08670 826433 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;OPMBFV O.I. C.G. H.G.
109.6 99.9 50.2 At5g25550 832630 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
108.9 99.9 150.8 At5g46940 834740 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
108.3 99.9 192.0 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO O.I. C.G. H.G.
106.3 99.9 79.9 At3g42850 823331 galactokinase, putative F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA O.I. C.G. H.G.
102.7 99.9 67.2 At2g33690 817934 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
100.2 99.9 78.6 At3g12660 820446 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) fasciclin-like arabinogalactan-protein, family (FLA14) O.I. C.G. H.G.
98.2 99.9 101.5 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
98.0 99.9 226.4 At3g07700 819961 ABC1 family protein F:unknown;P:unknown;C:chloroplast;OBMPFAV O.I. C.G. H.G.
96.3 99.9 129.7 At2g16750 816176 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
96.0 99.9 41.2 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA O.I. C.G. H.G.
93.7 99.9 121.4 At1g71680 843494 amino acid transmembrane transporter F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBV O.I. C.G. H.G.
93.4 99.9 438.3 At4g04460 825776 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPB O.I. C.G. H.G.
92.4 99.9 103.6 At1g04670 839451 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PAF O.I. C.G. H.G.
92.2 99.9 18.6 At1g32250 840117 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
91.4 99.9 112.0 At4g02140 827460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
90.5 99.9 51.7 At1g07795 837294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
90.4 99.9 59.7 At1g15460 838116 BOR4 (REQUIRES HIGH BORON 4) Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions. O.I. C.G. H.G.
90.1 99.9 592.0 At3g28830 822515 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
90.0 99.9 123.7 At4g18960 827631 AG (AGAMOUS) Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. O.I. C.G. H.G.
89.9 99.9 384.6 At5g07530 830646 GRP17 (GLYCINE RICH PROTEIN 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. O.I. C.G. H.G.
88.4 99.9 82.5 At3g21970 821756 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
88.0 99.9 51.5 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
88.0 99.9 42.8 At4g11030 826704 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV O.I. C.G. H.G.
85.2 99.9 57.6 At1g26320 839174 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA O.I. C.G. H.G.
85.1 99.9 597.4 At2g31980 817757 cysteine proteinase inhibitor-related F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
84.6 99.9 39.7 At3g10890 820259 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA O.I. C.G. H.G.
84.4 99.9 83.4 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. O.I. C.G. H.G.
84.2 99.9 115.1 At4g16480 827346 INT4 (INOSITOL TRANSPORTER 4) Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol. O.I. C.G. H.G.
84.0 99.9 75.5 At3g08560 820003 VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) F:hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuole, mitochondrial proton-transporting ATP synthase complex;MOFPAB O.I. C.G. H.G.
83.9 99.9 194.5 At2g28355 817383 LCR5 (Low-molecular-weight cysteine-rich 5) F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
82.6 99.9 275.7 At5g07560 830649 GRP20 (GLYCINE-RICH PROTEIN 20) Lipid-binding oleosins, glycine-rich protein. O.I. C.G. H.G.
82.4 99.9 56.0 At5g03620 831777 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
82.1 99.9 27.5 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
80.8 99.9 327.2 At3g28840 822516 unknown protein F:unknown;P:unknown;C:endomembrane system;BOMPFVA O.I. C.G. H.G.
80.8 99.9 107.2 At2g17730 816282 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
80.7 99.9 51.9 At3g18360 821365 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
80.5 99.9 65.6 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). O.I. C.G. H.G.
80.2 99.9 53.5 At4g10440 826636 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOA O.I. C.G. H.G.
79.1 99.9 18.9 At1g23250 838934 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
77.5 99.9 418.6 At3g28980 822538 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
76.2 99.9 98.3 At5g61605 836282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
75.9 99.9 87.7 At1g52570 841689 PLDALPHA2 (phosphlipase d alpha 2) member of C2-PLD subfamily O.I. C.G. H.G.
75.5 99.9 83.7 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
74.8 99.9 183.9 At4g01470 828051 TIP1 Encodes AtTIP1;3, functions as water and urea channels in pollen. O.I. C.G. H.G.
74.4 99.9 98.0 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) O.I. C.G. H.G.
73.9 99.9 213.8 At1g52680 841700 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
73.4 99.9 69.2 At4g25950 828701 VATG3 (vacuolar ATP synthase G3) V-ATPase G-subunit like protein O.I. C.G. H.G.
73.1 99.9 157.4 At2g47240 819337 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis O.I. C.G. H.G.
72.9 99.9 27.0 At1g72960 843627 root hair defective 3 GTP-binding (RHD3) family protein F:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMB O.I. C.G. H.G.
72.7 99.9 36.0 At1g68750 843206 ATPPC4 Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. C.G. H.G.
72.0 99.9 128.1 At1g22760 838882 PAB3 (POLY(A) BINDING PROTEIN 3) Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs. O.I. C.G. H.G.
71.9 99.9 215.1 At1g47980 841216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
71.5 99.9 203.5 At1g75930 843926 EXL6 member of Lipase proteins O.I. C.G. H.G.
71.0 99.9 462.5 At4g13560 826989 UNE15 (unfertilized embryo sac 15) F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
70.8 99.9 32.9 At1g23520 838960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
70.7 99.9 514.1 At3g28790 822511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
70.5 99.9 101.8 At2g16890 816190 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P O.I. C.G. H.G.
70.3 99.9 52.1 At5g46200 834662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
70.1 99.9 456.8 At1g69940 843331 PPME1 Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers. O.I. C.G. H.G.
69.6 99.9 59.7 At3g51070 824271 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
69.4 99.9 113.6 At3g05180 819682 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFMO O.I. C.G. H.G.
68.9 99.9 512.4 At5g07550 830648 GRP19 (GLYCINE-RICH PROTEIN 19) member of Oleosin-like protein family O.I. C.G. H.G.
68.8 99.9 241.9 At4g11760 826782 LCR17 (Low-molecular-weight cysteine-rich 17) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. O.I. C.G. H.G.
68.8 99.9 98.6 At5g42170 834222 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFVM O.I. C.G. H.G.
68.8 99.9 23.3 At4g35670 829719 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. C.G. H.G.
68.6 99.9 69.4 At5g53190 835400 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO O.I. C.G. H.G.
67.8 99.9 70.0 At3g52780 824444 PAP20 F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA O.I. C.G. H.G.
67.5 99.8 30.0 At5g03250 831894 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PM O.I. C.G. H.G.
67.1 99.8 687.8 At3g07850 819976 exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA O.I. C.G. H.G.
67.1 99.8 85.1 At5g17480 831614 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB O.I. C.G. H.G.
66.9 99.8 48.6 At4g22790 828378 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
65.8 99.8 84.3 At1g26480 839189 GRF12 (GENERAL REGULATORY FACTOR 12) 14-3-3 protein GF14iota (grf12) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
345.8	100.0	259.3	At2g40460	818640	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF	O.I.	C.G.	H.G.
341.6	100.0	165.4	At2g17950	816305	WUS (WUSCHEL)	Homeobox gene controlling the stem cell pool. Expressed in the stem cell organizing center of meristems. Required to keep the stem cells in an undifferentiated state. Regulation of WUS transcription is a central checkpoint in stem cell control. The size of the WUS expression domain controls the size of the stem cell population through WUS indirectly activating the expression of CLAVATA3 (CLV3) in the stem cells and CLV3 repressing WUS transcription through the CLV1 receptor kinase signaling pathway. Repression of WUS transcription through AGAMOUS (AG) activity controls stem cell activity in the determinate floral meristem. Binds to TAAT element core motif.	O.I.	C.G.	H.G.
249.9	100.0	106.0	At5g56330	835733	ACA8 (ALPHA CARBONIC ANHYDRASE 8)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process, cyanate metabolic process;C:unknown;MBOPFVA	O.I.	C.G.	H.G.
246.4	100.0	103.0	At1g15360	838105	SHN1 (SHINE 1)	Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.	O.I.	C.G.	H.G.
244.0	100.0	372.6	At4g25040	828607	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
229.8	100.0	113.0	At5g61430	836264	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
199.7	100.0	180.1	At2g23800	816912	GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2)	encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase	O.I.	C.G.	H.G.
191.6	100.0	70.7	At2g04675	815010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
180.8	100.0	283.4	At1g50310	841453	STP9 (SUGAR TRANSPORTER 9)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
173.5	100.0	131.1	At2g32890	817850	RALFL17 (RALF-LIKE 17)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.	O.I.	C.G.	H.G.
161.9	99.9	117.1	At1g28430	839741	CYP705A24	member of CYP705A	O.I.	C.G.	H.G.
153.4	99.9	31.0	At2g16120	816109	mannitol transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
143.2	99.9	114.1	At3g05960	819766	STP6 (SUGAR TRANSPORTER 6)	Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination.	O.I.	C.G.	H.G.
141.5	99.9	114.7	At1g59640	842254	ZCW32	A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.	O.I.	C.G.	H.G.
135.1	99.9	248.9	At5g44300	834453	dormancy/auxin associated family protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
133.1	99.9	72.9	At2g04020	814928	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:N-terminal protein myristoylation, lipid metabolic process;C:endomembrane system;PBM	O.I.	C.G.	H.G.
131.7	99.9	392.0	At2g07560	815329	AHA6 (Arabidopsis H(+)-ATPase 6)	F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV	O.I.	C.G.	H.G.
131.1	99.9	166.8	At5g62850	836406	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	Encodes a protein that is expressed in vegetative cells of pollen.	O.I.	C.G.	H.G.
130.9	99.9	339.6	At1g18280	838408	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POBM	O.I.	C.G.	H.G.
127.0	99.9	100.1	At5g07510	830644	GRP14	encodes a glycine-rich protein that is expressed in low abundance in stems and leaves, and very low abundance in flowers.	O.I.	C.G.	H.G.
124.1	99.9	60.7	At3g17720	821040	pyridoxal-dependent decarboxylase family protein	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOM	O.I.	C.G.	H.G.
122.8	99.9	299.0	At1g80660	844405	AHA9	F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:proton transport;C:plasma membrane;BMOFPAV	O.I.	C.G.	H.G.
122.7	99.9	78.0	At4g10850	826682	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
117.7	99.9	160.5	At2g29790	817529	-	Encodes a Maternally expressed gene (MEG) family protein [pseudogene]	O.I.	C.G.	H.G.
117.6	99.9	402.4	At5g53820	835463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
117.2	99.9	177.3	At5g07540	830647	GRP16 (GLYCINE-RICH PROTEIN 16)	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).	O.I.	C.G.	H.G.
111.4	99.9	228.1	At4g13230	826939	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PMBOF	O.I.	C.G.	H.G.
109.9	99.9	287.5	At4g08670	826433	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;OPMBFV	O.I.	C.G.	H.G.
109.6	99.9	50.2	At5g25550	832630	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
108.9	99.9	150.8	At5g46940	834740	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
108.3	99.9	192.0	At1g23240	838933	caleosin-related family protein	F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO	O.I.	C.G.	H.G.
106.3	99.9	79.9	At3g42850	823331	galactokinase, putative	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA	O.I.	C.G.	H.G.
102.7	99.9	67.2	At2g33690	817934	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
100.2	99.9	78.6	At3g12660	820446	FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR)	fasciclin-like arabinogalactan-protein, family (FLA14)	O.I.	C.G.	H.G.
98.2	99.9	101.5	At3g17630	821030	ATCHX19 (CATION/H+ EXCHANGER 19)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
98.0	99.9	226.4	At3g07700	819961	ABC1 family protein	F:unknown;P:unknown;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
96.3	99.9	129.7	At2g16750	816176	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
96.0	99.9	41.2	At3g52810	824447	PAP21 (PURPLE ACID PHOSPHATASE 21)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA	O.I.	C.G.	H.G.
93.7	99.9	121.4	At1g71680	843494	amino acid transmembrane transporter	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBV	O.I.	C.G.	H.G.
93.4	99.9	438.3	At4g04460	825776	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:endomembrane system;MFOPB	O.I.	C.G.	H.G.
92.4	99.9	103.6	At1g04670	839451	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PAF	O.I.	C.G.	H.G.
92.2	99.9	18.6	At1g32250	840117	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
91.4	99.9	112.0	At4g02140	827460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
90.5	99.9	51.7	At1g07795	837294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
90.4	99.9	59.7	At1g15460	838116	BOR4 (REQUIRES HIGH BORON 4)	Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.	O.I.	C.G.	H.G.
90.1	99.9	592.0	At3g28830	822515	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
90.0	99.9	123.7	At4g18960	827631	AG (AGAMOUS)	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	O.I.	C.G.	H.G.
89.9	99.9	384.6	At5g07530	830646	GRP17 (GLYCINE RICH PROTEIN 17)	encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat.	O.I.	C.G.	H.G.
88.4	99.9	82.5	At3g21970	821756	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
88.0	99.9	51.5	At1g30350	839915	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
88.0	99.9	42.8	At4g11030	826704	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
85.2	99.9	57.6	At1g26320	839174	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	C.G.	H.G.
85.1	99.9	597.4	At2g31980	817757	cysteine proteinase inhibitor-related	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
84.6	99.9	39.7	At3g10890	820259	(1-4)-beta-mannan endohydrolase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA	O.I.	C.G.	H.G.
84.4	99.9	83.4	At1g63710	842675	CYP86A7	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.	O.I.	C.G.	H.G.
84.2	99.9	115.1	At4g16480	827346	INT4 (INOSITOL TRANSPORTER 4)	Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol.	O.I.	C.G.	H.G.
84.0	99.9	75.5	At3g08560	820003	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2)	F:hydrogen-exporting ATPase activity, phosphorylative mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuole, mitochondrial proton-transporting ATP synthase complex;MOFPAB	O.I.	C.G.	H.G.
83.9	99.9	194.5	At2g28355	817383	LCR5 (Low-molecular-weight cysteine-rich 5)	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
82.6	99.9	275.7	At5g07560	830649	GRP20 (GLYCINE-RICH PROTEIN 20)	Lipid-binding oleosins, glycine-rich protein.	O.I.	C.G.	H.G.
82.4	99.9	56.0	At5g03620	831777	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
82.1	99.9	27.5	At1g23590	838969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
80.8	99.9	327.2	At3g28840	822516	unknown protein	F:unknown;P:unknown;C:endomembrane system;BOMPFVA	O.I.	C.G.	H.G.
80.8	99.9	107.2	At2g17730	816282	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
80.7	99.9	51.9	At3g18360	821365	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
80.5	99.9	65.6	At5g07520	830645	GRP18 (GLYCINE-RICH PROTEIN 18)	encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12).	O.I.	C.G.	H.G.
80.2	99.9	53.5	At4g10440	826636	dehydration-responsive family protein	F:unknown;P:unknown;C:unknown;PBOA	O.I.	C.G.	H.G.
79.1	99.9	18.9	At1g23250	838934	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
77.5	99.9	418.6	At3g28980	822538	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
76.2	99.9	98.3	At5g61605	836282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
75.9	99.9	87.7	At1g52570	841689	PLDALPHA2 (phosphlipase d alpha 2)	member of C2-PLD subfamily	O.I.	C.G.	H.G.
75.5	99.9	83.7	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
74.8	99.9	183.9	At4g01470	828051	TIP1	Encodes AtTIP1;3, functions as water and urea channels in pollen.	O.I.	C.G.	H.G.
74.4	99.9	98.0	At3g22740	821845	HMT3	homocysteine S-methyltransferase (HMT3)	O.I.	C.G.	H.G.
73.9	99.9	213.8	At1g52680	841700	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.4	99.9	69.2	At4g25950	828701	VATG3 (vacuolar ATP synthase G3)	V-ATPase G-subunit like protein	O.I.	C.G.	H.G.
73.1	99.9	157.4	At2g47240	819337	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein	Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis	O.I.	C.G.	H.G.
72.9	99.9	27.0	At1g72960	843627	root hair defective 3 GTP-binding (RHD3) family protein	F:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMB	O.I.	C.G.	H.G.
72.7	99.9	36.0	At1g68750	843206	ATPPC4	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	C.G.	H.G.
72.0	99.9	128.1	At1g22760	838882	PAB3 (POLY(A) BINDING PROTEIN 3)	Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.	O.I.	C.G.	H.G.
71.9	99.9	215.1	At1g47980	841216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
71.5	99.9	203.5	At1g75930	843926	EXL6	member of Lipase proteins	O.I.	C.G.	H.G.
71.0	99.9	462.5	At4g13560	826989	UNE15 (unfertilized embryo sac 15)	F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
70.8	99.9	32.9	At1g23520	838960	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
70.7	99.9	514.1	At3g28790	822511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
70.5	99.9	101.8	At2g16890	816190	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
70.3	99.9	52.1	At5g46200	834662	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
70.1	99.9	456.8	At1g69940	843331	PPME1	Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.	O.I.	C.G.	H.G.
69.6	99.9	59.7	At3g51070	824271	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
69.4	99.9	113.6	At3g05180	819682	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFMO	O.I.	C.G.	H.G.
68.9	99.9	512.4	At5g07550	830648	GRP19 (GLYCINE-RICH PROTEIN 19)	member of Oleosin-like protein family	O.I.	C.G.	H.G.
68.8	99.9	241.9	At4g11760	826782	LCR17 (Low-molecular-weight cysteine-rich 17)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	O.I.	C.G.	H.G.
68.8	99.9	98.6	At5g42170	834222	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFVM	O.I.	C.G.	H.G.
68.8	99.9	23.3	At4g35670	829719	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA	O.I.	C.G.	H.G.
68.6	99.9	69.4	At5g53190	835400	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
67.8	99.9	70.0	At3g52780	824444	PAP20	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA	O.I.	C.G.	H.G.
67.5	99.8	30.0	At5g03250	831894	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
67.1	99.8	687.8	At3g07850	819976	exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA	O.I.	C.G.	H.G.
67.1	99.8	85.1	At5g17480	831614	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	F:calcium ion binding;P:biological_process unknown;C:cytoplasm;MPFOB	O.I.	C.G.	H.G.
66.9	99.8	48.6	At4g22790	828378	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
65.8	99.8	84.3	At1g26480	839189	GRF12 (GENERAL REGULATORY FACTOR 12)	14-3-3 protein GF14iota (grf12)	O.I.	C.G.	H.G.

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GSM ID	GSM106909
Assay name	opr3-JA_2 hrs_Rep1
GSE experiment	GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

Microarray experiments to specifically-expressed genes

GSM ID GSM106909 Assay name opr3-JA_2 hrs_Rep1 GSE experiment GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling

GSM ID GSM106909

Assay name opr3-JA_2 hrs_Rep1

GSE experiment GSE4733: Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling