Microarray experiments to specifically-expressed genes

GSM ID GSM10481
Assay name lec1-1 Mature Green Seed 1
GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
538.4100.0760.2At3g62730825448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
356.8100.0373.7At1g14940838059major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
307.7100.0745.6At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.O.I.C.G.H.G.
258.4100.0793.9At1g62000842495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
235.7100.0387.7At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseO.I.C.G.H.G.
232.8100.0962.8At4g271708288252S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
232.6100.0768.5At4g27160828824AT2S3F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
221.9100.0103.3At1g05450837046protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedEncodes a Protease inhibitor/seed storage/LTP family proteinO.I.C.G.H.G.
212.3100.0158.4At3g04170819572germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOO.I.C.G.H.G.
206.3100.0765.1At4g271408288222S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMOO.I.C.G.H.G.
200.4100.0541.4At1g14950838060major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
185.2100.0817.7At5g54740835563protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;POO.I.C.G.H.G.
180.2100.0129.8At1g11170837658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
174.6100.0256.8At3g21370821691BGLU19 (BETA GLUCOSIDASE 19)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
164.299.969.0At1g68380843167unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
162.399.9971.1At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
162.099.9159.2At1g22990838907heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFMO.I.C.G.H.G.
156.099.9172.1At1g14930838058major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
145.099.950.3At2g05910815143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
136.899.9738.7At3g02480821185ABA-responsive protein-relatedF:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMFO.I.C.G.H.G.
133.999.9118.4At1g09380837460integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
130.899.9495.0At5g59170836035proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
118.199.926.4At1g68250843154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
116.299.9218.7At2g33070817869NSP2 (NITRILE SPECIFIER PROTEIN 2)Encodes a nitrile-specifier protein NSP2. NSP2 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
111.799.9118.2At3g21380821692-F:unknown;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
110.399.960.9At5g16230831483acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOMO.I.C.G.H.G.
102.699.983.4At5g19100832030extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
102.499.9383.1At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
88.299.940.9At5g64190836540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
87.899.9146.3At2g41290818728strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFAO.I.C.G.H.G.
84.899.952.1At3g22400821808LOX5F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFOO.I.C.G.H.G.
84.699.934.0At1g53100841744acetylglucosaminyltransferaseF:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOO.I.C.G.H.G.
81.099.983.0At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
80.399.9189.8At5g59845836106gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
80.399.964.9At1g08810837403MYB60 (myb domain protein 60)putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.O.I.C.G.H.G.
69.699.9284.3At2g35300818097late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;PO.I.C.G.H.G.
66.399.882.8At3g53510824519ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
64.499.8585.3At1g03880839383CRU2 (CRUCIFERIN 2)Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
63.099.8100.4At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
59.899.829.8At3g04180819573germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBAO.I.C.G.H.G.
59.299.8129.1At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
54.899.8140.3At1g19900838578glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.C.G.H.G.
54.599.826.3At3g14630820691CYP72A9putative cytochrome P450O.I.C.G.H.G.
54.299.856.6At3g60730825244pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
52.599.8189.2At1g73220843656AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOAO.I.C.G.H.G.
52.199.822.7At3g04150819570germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
44.699.8463.6At5g44120834435CRA1 (CRUCIFERINA)Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
43.799.8142.4At5g13170831156SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
42.199.8112.8At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
40.799.8279.1At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
35.499.725.2At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
34.899.795.5At2g41390818737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.499.765.1At4g34250829574KCS16 (3-KETOACYL-COA SYNTHASE 16)Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
33.499.746.6At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
33.299.7221.4At2g02120814743PDF2.1Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
32.099.7263.3At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.O.I.C.G.H.G.
31.299.7133.2At2g15010815990thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
31.099.7198.7At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
30.799.717.7At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
30.299.717.9At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
29.699.722.4At2g34315817993disease resistance protein-relatedF:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
28.799.7219.0At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerO.I.C.G.H.G.
28.499.7111.8At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO.I.C.G.H.G.
27.699.759.1At1g09280837449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMPO.I.C.G.H.G.
26.699.7116.3At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
26.699.718.5At5g20940832219glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAMO.I.C.G.H.G.
25.899.7258.6At5g40420834040OLEO2 (OLEOSIN 2)Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
24.899.681.4At4g31830829312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.899.613.2At3g63360825511defensin-relatedEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
24.299.6156.5At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
23.799.6371.7At3g48740824035nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
23.499.6348.8At5g56540835755AGP14 (ARABINOGALACTAN PROTEIN 14)Encodes arabinogalactan protein (AGP14).O.I.C.G.H.G.
23.199.6100.8At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAO.I.C.G.H.G.
23.099.6162.4At1g03890839379cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMOO.I.C.G.H.G.
22.999.6122.7At2g38905818475hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOO.I.C.G.H.G.
22.899.622.9At4g16620827363integral membrane family protein / nodulin MtN21-relatedF:molecular_function unknown;P:unknown;C:membrane;PBOFAMO.I.C.G.H.G.
22.799.633.0At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.299.625.0At5g01180831725PTR5 (PEPTIDE TRANSPORTER 5)Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.O.I.C.G.H.G.
22.099.625.4At2g24430816979ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PMFO.I.C.G.H.G.
21.799.6489.5At1g56580842112unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.699.6146.0At5g07190830610ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.O.I.C.G.H.G.
21.399.665.6At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.O.I.C.G.H.G.
20.699.6174.6At1g48130841231ATPER1encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.O.I.C.G.H.G.
20.699.6147.6At3g54940824659--O.I.C.G.H.G.
19.999.6234.5At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
19.799.6136.3At5g57550835859XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)xyloglucan endotransglycosylase-related protein (XTR3)O.I.C.G.H.G.
19.799.649.1At5g23750832440remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
19.499.6209.2At3g15670820810late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVAO.I.C.G.H.G.
19.499.6107.8At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.O.I.C.G.H.G.
19.399.616.5At2g44260819034unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFMBOO.I.C.G.H.G.
19.299.690.6At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.O.I.C.G.H.G.
19.199.634.7At5g14130831263peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
19.099.5158.9At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
18.999.523.7At2g29940817544PDR3 (PLEIOTROPIC DRUG RESISTANCE 3)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.H.G.
18.799.5132.8At5g66780836811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.099.597.2At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.999.5284.7At1g52690841701late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVAO.I.C.G.H.G.
16.899.5133.9At1g05510837053-Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
16.499.5193.3At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMO.I.C.G.H.G.
15.799.560.1At5g50750835147RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)reversibly glycosylated polypeptide RGP-4 (RGP4)O.I.C.G.H.G.



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