CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM10478

Assay name lec1-1 24-Hr Seed 2

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
597.9 100.0 95.3 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
423.8 100.0 239.6 At5g21150 832241 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
235.6 100.0 37.1 At2g21655 816704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
228.2 100.0 44.1 At4g36740 829827 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
207.4 100.0 276.9 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
185.7 100.0 166.2 At1g02190 839541 CER1 protein, putative F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV O.I. C.G. H.G.
184.0 100.0 132.8 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
159.0 99.9 110.8 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
158.9 99.9 30.7 At1g69100 843242 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPB O.I. C.G. H.G.
158.5 99.9 51.6 At5g58400 835953 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
154.6 99.9 132.2 At5g02550 831052 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
147.9 99.9 137.6 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
141.6 99.9 733.8 At1g72260 843558 THI2.1 (THIONIN 2.1) Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
119.7 99.9 91.3 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
116.4 99.9 76.9 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
115.7 99.9 384.3 At5g24420 832513 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
114.4 99.9 35.1 At5g43510 834371 - - O.I. C.G. H.G.
110.7 99.9 30.0 At1g23050 838913 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBV O.I. C.G. H.G.
108.1 99.9 115.7 At4g21590 828245 ENDO3 (endonuclease 3) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development. O.I. C.G. H.G.
104.1 99.9 35.6 At5g23260 832390 TT16 (TRANSPARENT TESTA16) Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. O.I. C.G. H.G.
103.3 99.9 46.5 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
100.3 99.9 107.9 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
97.0 99.9 653.9 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
94.3 99.9 105.0 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
92.8 99.9 93.0 At1g51460 841571 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
86.2 99.9 33.0 At1g52970 841730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
81.1 99.9 239.6 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. O.I. C.G. H.G.
79.1 99.9 147.1 At1g19330 838515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
73.8 99.9 72.1 At5g07280 830619 EMS1 (EXCESS MICROSPOROCYTES1) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation O.I. C.G. H.G.
65.9 99.8 38.8 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
61.3 99.8 104.4 At1g24540 839069 CYP86C1 member of CYP86C O.I. C.G. H.G.
59.3 99.8 34.9 At2g35310 818098 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
59.1 99.8 51.2 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
58.5 99.8 61.2 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
56.7 99.8 38.6 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
53.5 99.8 53.5 At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
52.9 99.8 21.6 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator O.I. C.G. H.G.
51.7 99.8 131.9 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
49.3 99.8 55.3 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
48.7 99.8 121.3 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. O.I. C.G. H.G.
47.8 99.8 92.6 At2g17880 816298 DNAJ heat shock protein, putative F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
47.5 99.8 65.3 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.4 99.8 54.7 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
47.0 99.8 25.1 At5g18000 831667 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF O.I. C.G. H.G.
46.6 99.8 14.7 At5g51850 835260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
46.1 99.8 104.6 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
45.9 99.8 53.3 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
44.8 99.8 34.5 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. O.I. C.G. H.G.
44.6 99.8 79.0 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
44.3 99.8 109.1 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. O.I. C.G. H.G.
43.6 99.8 49.1 At3g60900 825261 FLA10 F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA O.I. C.G. H.G.
43.6 99.8 29.5 At5g03390 831852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
43.5 99.8 155.7 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
42.9 99.8 93.9 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
42.8 99.8 33.4 At1g60060 842300 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB O.I. C.G. H.G.
42.7 99.8 58.7 At1g74430 843784 MYB95 (myb domain protein 95) Encodes a putative transcription factor (MYB95). O.I. C.G. H.G.
42.5 99.8 41.5 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
41.5 99.8 19.1 At2g45650 819173 AGL6 (AGAMOUS-LIKE 6) sequence suggests this encodes a MADS-box transcription factor O.I. C.G. H.G.
41.4 99.8 21.4 At3g56610 824828 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
40.4 99.8 27.6 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA O.I. C.G. H.G.
40.0 99.8 38.6 At4g24810 828584 ABC1 family protein similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) O.I. C.G. H.G.
39.7 99.8 26.4 At4g21550 828240 VAL3 (VP1/ABI3-LIKE 3) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:endomembrane system;PMO O.I. C.G. H.G.
39.4 99.8 29.8 At5g25470 832621 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P O.I. C.G. H.G.
39.1 99.8 24.0 At1g48180 841238 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.9 99.8 14.5 At3g04540 819610 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
38.2 99.8 132.4 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo O.I. C.G. H.G.
38.2 99.8 38.4 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.9 99.8 260.7 At1g72970 843628 HTH (HOTHEAD) Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. O.I. C.G. H.G.
37.7 99.7 77.7 At3g06130 819786 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA O.I. C.G. H.G.
36.5 99.7 147.6 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. O.I. C.G. H.G.
36.3 99.7 52.6 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
36.1 99.7 85.9 At3g29810 822697 COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
35.6 99.7 42.6 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
35.6 99.7 20.3 At3g24340 822023 chr40 (chromatin remodeling 40) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA O.I. C.G. H.G.
35.2 99.7 52.8 At5g67460 836882 glycosyl hydrolase family protein 17 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM O.I. C.G. H.G.
35.2 99.7 33.0 At4g32170 829349 CYP96A2 member of CYP96A O.I. C.G. H.G.
34.8 99.7 100.3 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
34.5 99.7 243.1 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
34.2 99.7 72.9 At3g11600 820333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
33.5 99.7 37.5 At4g16447 827342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.4 99.7 64.3 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
32.2 99.7 285.1 At5g51750 835249 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM O.I. C.G. H.G.
32.2 99.7 63.0 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
32.0 99.7 34.3 At1g05540 837056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
31.9 99.7 17.9 At1g23420 838950 INO (INNER NO OUTER) Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. O.I. C.G. H.G.
31.8 99.7 31.3 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
31.5 99.7 16.8 At5g42230 834228 scpl41 (serine carboxypeptidase-like 41) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
31.2 99.7 11.5 At2g32790 817840 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV O.I. C.G. H.G.
30.9 99.7 310.1 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
30.8 99.7 752.9 At3g08770 820024 LTP6 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
30.8 99.7 139.0 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
30.0 99.7 28.6 At5g04660 830343 CYP77A4 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
29.1 99.7 307.1 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
29.0 99.7 17.2 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
28.8 99.7 115.3 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
28.7 99.7 29.9 At3g11000 820271 - F:unknown;P:unknown;C:endomembrane system;POBFMV O.I. C.G. H.G.
28.3 99.7 79.9 At1g77000 844036 SKP2B AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor. O.I. C.G. H.G.
28.2 99.7 44.7 At1g56210 842074 copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
28.1 99.7 55.3 At5g14210 831271 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVA O.I. C.G. H.G.
28.1 99.7 52.3 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
597.9	100.0	95.3	At5g58782	835993	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
423.8	100.0	239.6	At5g21150	832241	PAZ domain-containing protein / piwi domain-containing protein	F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
235.6	100.0	37.1	At2g21655	816704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
228.2	100.0	44.1	At4g36740	829827	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
207.4	100.0	276.9	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
185.7	100.0	166.2	At1g02190	839541	CER1 protein, putative	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV	O.I.	C.G.	H.G.
184.0	100.0	132.8	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
159.0	99.9	110.8	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
158.9	99.9	30.7	At1g69100	843242	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPB	O.I.	C.G.	H.G.
158.5	99.9	51.6	At5g58400	835953	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
154.6	99.9	132.2	At5g02550	831052	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
147.9	99.9	137.6	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
141.6	99.9	733.8	At1g72260	843558	THI2.1 (THIONIN 2.1)	Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
119.7	99.9	91.3	At5g60140	836136	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
116.4	99.9	76.9	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
115.7	99.9	384.3	At5g24420	832513	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
114.4	99.9	35.1	At5g43510	834371	-	-	O.I.	C.G.	H.G.
110.7	99.9	30.0	At1g23050	838913	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBV	O.I.	C.G.	H.G.
108.1	99.9	115.7	At4g21590	828245	ENDO3 (endonuclease 3)	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.	O.I.	C.G.	H.G.
104.1	99.9	35.6	At5g23260	832390	TT16 (TRANSPARENT TESTA16)	Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.	O.I.	C.G.	H.G.
103.3	99.9	46.5	At3g04960	819656	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
100.3	99.9	107.9	At4g21630	828250	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
97.0	99.9	653.9	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
94.3	99.9	105.0	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
92.8	99.9	93.0	At1g51460	841571	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
86.2	99.9	33.0	At1g52970	841730	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
81.1	99.9	239.6	At1g70710	843408	ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)	endo-1,4-beta-glucanase. Involved in cell elongation.	O.I.	C.G.	H.G.
79.1	99.9	147.1	At1g19330	838515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
73.8	99.9	72.1	At5g07280	830619	EMS1 (EXCESS MICROSPOROCYTES1)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation	O.I.	C.G.	H.G.
65.9	99.8	38.8	At5g61120	836233	-	F:unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
61.3	99.8	104.4	At1g24540	839069	CYP86C1	member of CYP86C	O.I.	C.G.	H.G.
59.3	99.8	34.9	At2g35310	818098	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.1	99.8	51.2	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
58.5	99.8	61.2	At3g46770	823830	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.7	99.8	38.6	At4g17480	827459	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
53.5	99.8	53.5	At4g21480	828233	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
52.9	99.8	21.6	At3g50870	824251	MNP (MONOPOLE)	mutant has Embryo defect; GATA Factor Transcriptional Regulator	O.I.	C.G.	H.G.
51.7	99.8	131.9	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
49.3	99.8	55.3	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
48.7	99.8	121.3	At1g24260	839040	SEP3 (SEPALLATA3)	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	O.I.	C.G.	H.G.
47.8	99.8	92.6	At2g17880	816298	DNAJ heat shock protein, putative	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
47.5	99.8	65.3	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.4	99.8	54.7	At5g06350	830523	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
47.0	99.8	25.1	At5g18000	831667	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
46.6	99.8	14.7	At5g51850	835260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
46.1	99.8	104.6	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
45.9	99.8	53.3	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
44.8	99.8	34.5	At1g71890	843520	SUC5	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	O.I.	C.G.	H.G.
44.6	99.8	79.0	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
44.3	99.8	109.1	At4g24040	828504	TRE1 (TREHALASE 1)	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	O.I.	C.G.	H.G.
43.6	99.8	49.1	At3g60900	825261	FLA10	F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA	O.I.	C.G.	H.G.
43.6	99.8	29.5	At5g03390	831852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
43.5	99.8	155.7	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
42.9	99.8	93.9	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
42.8	99.8	33.4	At1g60060	842300	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMB	O.I.	C.G.	H.G.
42.7	99.8	58.7	At1g74430	843784	MYB95 (myb domain protein 95)	Encodes a putative transcription factor (MYB95).	O.I.	C.G.	H.G.
42.5	99.8	41.5	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
41.5	99.8	19.1	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	O.I.	C.G.	H.G.
41.4	99.8	21.4	At3g56610	824828	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
40.4	99.8	27.6	At3g51290	824292	proline-rich family protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
40.0	99.8	38.6	At4g24810	828584	ABC1 family protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	O.I.	C.G.	H.G.
39.7	99.8	26.4	At4g21550	828240	VAL3 (VP1/ABI3-LIKE 3)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:endomembrane system;PMO	O.I.	C.G.	H.G.
39.4	99.8	29.8	At5g25470	832621	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P	O.I.	C.G.	H.G.
39.1	99.8	24.0	At1g48180	841238	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.9	99.8	14.5	At3g04540	819610	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
38.2	99.8	132.4	At3g02310	821151	SEP2 (SEPALLATA 2)	MADS-box protein, binds K domain of AG in vivo	O.I.	C.G.	H.G.
38.2	99.8	38.4	At1g16705	838241	p300/CBP acetyltransferase-related protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.9	99.8	260.7	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	O.I.	C.G.	H.G.
37.7	99.7	77.7	At3g06130	819786	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA	O.I.	C.G.	H.G.
36.5	99.7	147.6	At2g27040	817246	AGO4 (ARGONAUTE 4)	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.	O.I.	C.G.	H.G.
36.3	99.7	52.6	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
36.1	99.7	85.9	At3g29810	822697	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
35.6	99.7	42.6	At1g03170	839563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
35.6	99.7	20.3	At3g24340	822023	chr40 (chromatin remodeling 40)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA	O.I.	C.G.	H.G.
35.2	99.7	52.8	At5g67460	836882	glycosyl hydrolase family protein 17	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM	O.I.	C.G.	H.G.
35.2	99.7	33.0	At4g32170	829349	CYP96A2	member of CYP96A	O.I.	C.G.	H.G.
34.8	99.7	100.3	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
34.5	99.7	243.1	At5g62740	836395	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
34.2	99.7	72.9	At3g11600	820333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
33.5	99.7	37.5	At4g16447	827342	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.4	99.7	64.3	At4g37250	829879	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
32.2	99.7	285.1	At5g51750	835249	ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM	O.I.	C.G.	H.G.
32.2	99.7	63.0	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
32.0	99.7	34.3	At1g05540	837056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
31.9	99.7	17.9	At1g23420	838950	INO (INNER NO OUTER)	Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.	O.I.	C.G.	H.G.
31.8	99.7	31.3	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
31.5	99.7	16.8	At5g42230	834228	scpl41 (serine carboxypeptidase-like 41)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
31.2	99.7	11.5	At2g32790	817840	ubiquitin-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV	O.I.	C.G.	H.G.
30.9	99.7	310.1	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
30.8	99.7	752.9	At3g08770	820024	LTP6	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
30.8	99.7	139.0	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
30.0	99.7	28.6	At5g04660	830343	CYP77A4	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
29.1	99.7	307.1	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
29.0	99.7	17.2	At1g19830	838570	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
28.8	99.7	115.3	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
28.7	99.7	29.9	At3g11000	820271	-	F:unknown;P:unknown;C:endomembrane system;POBFMV	O.I.	C.G.	H.G.
28.3	99.7	79.9	At1g77000	844036	SKP2B	AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	O.I.	C.G.	H.G.
28.2	99.7	44.7	At1g56210	842074	copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
28.1	99.7	55.3	At5g14210	831271	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVA	O.I.	C.G.	H.G.
28.1	99.7	52.3	At4g26590	828766	OPT5 (OLIGOPEPTIDE TRANSPORTER 5)	oligopeptide transporter	O.I.	C.G.	H.G.

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GSM ID	GSM10478
Assay name	lec1-1 24-Hr Seed 2
GSE experiment	GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM10478 Assay name lec1-1 24-Hr Seed 2 GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

GSM ID GSM10478

Assay name lec1-1 24-Hr Seed 2

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants