CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM10477

Assay name lec1-1 24-Hr Seed 1

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
524.1 100.0 89.2 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
332.4 100.0 212.2 At5g21150 832241 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
247.3 100.0 302.3 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
247.0 100.0 45.9 At4g36740 829827 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
208.1 100.0 163.2 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
201.3 100.0 58.2 At5g58400 835953 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
193.4 100.0 154.7 At4g21590 828245 ENDO3 (endonuclease 3) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development. O.I. C.G. H.G.
182.0 100.0 145.9 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
180.1 100.0 46.8 At5g23260 832390 TT16 (TRANSPARENT TESTA16) Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. O.I. C.G. H.G.
168.1 100.0 108.2 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
167.4 100.0 113.7 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
157.1 99.9 57.4 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
147.1 99.9 34.6 At1g23050 838913 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBV O.I. C.G. H.G.
145.0 99.9 117.9 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
140.9 99.9 732.0 At1g72260 843558 THI2.1 (THIONIN 2.1) Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
133.7 99.9 82.4 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
129.5 99.9 138.8 At1g02190 839541 CER1 protein, putative F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV O.I. C.G. H.G.
118.6 99.9 389.1 At5g24420 832513 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
110.9 99.9 113.4 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
109.7 99.9 171.8 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. O.I. C.G. H.G.
106.9 99.9 25.2 At1g69100 843242 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPB O.I. C.G. H.G.
103.8 99.9 48.7 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
100.9 99.9 106.8 At5g02550 831052 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
100.3 99.9 80.0 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
96.1 99.9 130.8 At1g24540 839069 CYP86C1 member of CYP86C O.I. C.G. H.G.
95.0 99.9 23.6 At2g21655 816704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
87.6 99.9 68.5 At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
86.8 99.9 90.0 At1g51460 841571 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
85.8 99.9 19.9 At5g51850 835260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
85.5 99.9 77.5 At5g07280 830619 EMS1 (EXCESS MICROSPOROCYTES1) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation O.I. C.G. H.G.
83.2 99.9 242.6 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. O.I. C.G. H.G.
83.0 99.9 604.8 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
79.5 99.9 210.5 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
77.7 99.9 135.8 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
74.7 99.9 39.1 At2g35310 818098 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
73.9 99.9 142.2 At1g19330 838515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
73.7 99.9 25.4 At2g45650 819173 AGL6 (AGAMOUS-LIKE 6) sequence suggests this encodes a MADS-box transcription factor O.I. C.G. H.G.
72.9 99.9 43.8 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
71.9 99.9 359.1 At1g72970 843628 HTH (HOTHEAD) Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. O.I. C.G. H.G.
65.8 99.8 116.4 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
65.1 99.8 70.4 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
65.0 99.8 33.7 At4g21550 828240 VAL3 (VP1/ABI3-LIKE 3) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:endomembrane system;PMO O.I. C.G. H.G.
63.8 99.8 23.7 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator O.I. C.G. H.G.
63.5 99.8 106.7 At2g17880 816298 DNAJ heat shock protein, putative F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
62.9 99.8 113.4 At3g29810 822697 COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
61.0 99.8 61.5 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
58.8 99.8 85.3 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
57.4 99.8 67.4 At5g67460 836882 glycosyl hydrolase family protein 17 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM O.I. C.G. H.G.
56.5 99.8 32.6 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA O.I. C.G. H.G.
55.9 99.8 15.4 At2g32790 817840 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV O.I. C.G. H.G.
54.7 99.8 45.1 At4g24810 828584 ABC1 family protein similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) O.I. C.G. H.G.
53.8 99.8 40.6 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
53.1 99.8 45.2 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.6 99.8 63.2 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
52.4 99.8 26.5 At5g18000 831667 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF O.I. C.G. H.G.
51.7 99.8 56.6 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
51.2 99.8 47.7 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
50.1 99.8 151.7 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo O.I. C.G. H.G.
48.5 99.8 22.9 At5g43510 834371 - - O.I. C.G. H.G.
48.1 99.8 120.6 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. O.I. C.G. H.G.
47.4 99.8 61.9 At1g74430 843784 MYB95 (myb domain protein 95) Encodes a putative transcription factor (MYB95). O.I. C.G. H.G.
47.3 99.8 32.6 At5g25470 832621 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P O.I. C.G. H.G.
45.5 99.8 42.9 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
45.3 99.8 123.6 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
45.2 99.8 30.3 At1g63480 842654 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV O.I. C.G. H.G.
44.6 99.8 43.3 At4g16447 827342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.4 99.8 22.7 At3g24340 822023 chr40 (chromatin remodeling 40) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA O.I. C.G. H.G.
44.2 99.8 31.5 At5g48650 834922 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA O.I. C.G. H.G.
43.2 99.8 111.8 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
40.3 99.8 20.6 At2g46660 819278 CYP78A6 member of CYP78A O.I. C.G. H.G.
40.3 99.8 18.0 At5g12270 831102 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
39.8 99.8 21.1 At5g11360 831007 - F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.7 99.8 32.5 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. O.I. C.G. H.G.
39.5 99.8 44.8 At1g03170 839563 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
39.3 99.8 79.4 At3g06130 819786 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA O.I. C.G. H.G.
39.0 99.8 152.4 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. O.I. C.G. H.G.
38.5 99.8 27.7 At5g03390 831852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.8 99.8 56.7 At1g07570 837271 APK1A Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues O.I. C.G. H.G.
37.3 99.7 252.9 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
36.8 99.7 57.5 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.6 99.7 81.1 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
36.6 99.7 18.2 At5g42230 834228 scpl41 (serine carboxypeptidase-like 41) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
36.3 99.7 62.9 At5g14210 831271 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVA O.I. C.G. H.G.
36.2 99.7 44.8 At3g60900 825261 FLA10 F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA O.I. C.G. H.G.
35.7 99.7 48.4 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
35.6 99.7 125.7 At5g47370 834784 HAT2 homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis. O.I. C.G. H.G.
34.9 99.7 336.6 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
34.7 99.7 36.3 At4g24260 828527 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
34.7 99.7 27.5 At1g65000 842808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.6 99.7 37.6 At2g41550 818753 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
34.4 99.7 22.0 At3g59420 825111 ACR4 (ARABIDOPSIS CRINKLY4) Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes. O.I. C.G. H.G.
33.4 99.7 86.9 At1g77000 844036 SKP2B AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor. O.I. C.G. H.G.
33.4 99.7 32.1 At4g32170 829349 CYP96A2 member of CYP96A O.I. C.G. H.G.
33.3 99.7 45.8 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
33.1 99.7 123.6 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
33.0 99.7 151.4 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
32.7 99.7 24.0 At3g03590 821215 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMBFV O.I. C.G. H.G.
32.5 99.7 96.5 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA O.I. C.G. H.G.
32.4 99.7 29.3 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
32.3 99.7 6.5 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
524.1	100.0	89.2	At5g58782	835993	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
332.4	100.0	212.2	At5g21150	832241	PAZ domain-containing protein / piwi domain-containing protein	F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
247.3	100.0	302.3	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
247.0	100.0	45.9	At4g36740	829827	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
208.1	100.0	163.2	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
201.3	100.0	58.2	At5g58400	835953	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
193.4	100.0	154.7	At4g21590	828245	ENDO3 (endonuclease 3)	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.	O.I.	C.G.	H.G.
182.0	100.0	145.9	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
180.1	100.0	46.8	At5g23260	832390	TT16 (TRANSPARENT TESTA16)	Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.	O.I.	C.G.	H.G.
168.1	100.0	108.2	At5g60140	836136	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
167.4	100.0	113.7	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
157.1	99.9	57.4	At3g04960	819656	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
147.1	99.9	34.6	At1g23050	838913	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBV	O.I.	C.G.	H.G.
145.0	99.9	117.9	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
140.9	99.9	732.0	At1g72260	843558	THI2.1 (THIONIN 2.1)	Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
133.7	99.9	82.4	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
129.5	99.9	138.8	At1g02190	839541	CER1 protein, putative	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMV	O.I.	C.G.	H.G.
118.6	99.9	389.1	At5g24420	832513	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
110.9	99.9	113.4	At4g21630	828250	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
109.7	99.9	171.8	At4g24040	828504	TRE1 (TREHALASE 1)	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	O.I.	C.G.	H.G.
106.9	99.9	25.2	At1g69100	843242	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPB	O.I.	C.G.	H.G.
103.8	99.9	48.7	At5g61120	836233	-	F:unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
100.9	99.9	106.8	At5g02550	831052	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
100.3	99.9	80.0	At3g46770	823830	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.1	99.9	130.8	At1g24540	839069	CYP86C1	member of CYP86C	O.I.	C.G.	H.G.
95.0	99.9	23.6	At2g21655	816704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
87.6	99.9	68.5	At4g21480	828233	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
86.8	99.9	90.0	At1g51460	841571	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
85.8	99.9	19.9	At5g51850	835260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
85.5	99.9	77.5	At5g07280	830619	EMS1 (EXCESS MICROSPOROCYTES1)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation	O.I.	C.G.	H.G.
83.2	99.9	242.6	At1g70710	843408	ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)	endo-1,4-beta-glucanase. Involved in cell elongation.	O.I.	C.G.	H.G.
83.0	99.9	604.8	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
79.5	99.9	210.5	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
77.7	99.9	135.8	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
74.7	99.9	39.1	At2g35310	818098	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.9	99.9	142.2	At1g19330	838515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
73.7	99.9	25.4	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	O.I.	C.G.	H.G.
72.9	99.9	43.8	At4g17480	827459	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
71.9	99.9	359.1	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	O.I.	C.G.	H.G.
65.8	99.8	116.4	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
65.1	99.8	70.4	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
65.0	99.8	33.7	At4g21550	828240	VAL3 (VP1/ABI3-LIKE 3)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:endomembrane system;PMO	O.I.	C.G.	H.G.
63.8	99.8	23.7	At3g50870	824251	MNP (MONOPOLE)	mutant has Embryo defect; GATA Factor Transcriptional Regulator	O.I.	C.G.	H.G.
63.5	99.8	106.7	At2g17880	816298	DNAJ heat shock protein, putative	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
62.9	99.8	113.4	At3g29810	822697	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
61.0	99.8	61.5	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
58.8	99.8	85.3	At4g37250	829879	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
57.4	99.8	67.4	At5g67460	836882	glycosyl hydrolase family protein 17	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM	O.I.	C.G.	H.G.
56.5	99.8	32.6	At3g51290	824292	proline-rich family protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
55.9	99.8	15.4	At2g32790	817840	ubiquitin-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV	O.I.	C.G.	H.G.
54.7	99.8	45.1	At4g24810	828584	ABC1 family protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	O.I.	C.G.	H.G.
53.8	99.8	40.6	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
53.1	99.8	45.2	At1g16705	838241	p300/CBP acetyltransferase-related protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.6	99.8	63.2	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.4	99.8	26.5	At5g18000	831667	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
51.7	99.8	56.6	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
51.2	99.8	47.7	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
50.1	99.8	151.7	At3g02310	821151	SEP2 (SEPALLATA 2)	MADS-box protein, binds K domain of AG in vivo	O.I.	C.G.	H.G.
48.5	99.8	22.9	At5g43510	834371	-	-	O.I.	C.G.	H.G.
48.1	99.8	120.6	At1g24260	839040	SEP3 (SEPALLATA3)	Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.	O.I.	C.G.	H.G.
47.4	99.8	61.9	At1g74430	843784	MYB95 (myb domain protein 95)	Encodes a putative transcription factor (MYB95).	O.I.	C.G.	H.G.
47.3	99.8	32.6	At5g25470	832621	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P	O.I.	C.G.	H.G.
45.5	99.8	42.9	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
45.3	99.8	123.6	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
45.2	99.8	30.3	At1g63480	842654	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:unknown;PMFOBV	O.I.	C.G.	H.G.
44.6	99.8	43.3	At4g16447	827342	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.4	99.8	22.7	At3g24340	822023	chr40 (chromatin remodeling 40)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA	O.I.	C.G.	H.G.
44.2	99.8	31.5	At5g48650	834922	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA	O.I.	C.G.	H.G.
43.2	99.8	111.8	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
40.3	99.8	20.6	At2g46660	819278	CYP78A6	member of CYP78A	O.I.	C.G.	H.G.
40.3	99.8	18.0	At5g12270	831102	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
39.8	99.8	21.1	At5g11360	831007	-	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.7	99.8	32.5	At1g71890	843520	SUC5	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	O.I.	C.G.	H.G.
39.5	99.8	44.8	At1g03170	839563	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
39.3	99.8	79.4	At3g06130	819786	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA	O.I.	C.G.	H.G.
39.0	99.8	152.4	At2g27040	817246	AGO4 (ARGONAUTE 4)	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.	O.I.	C.G.	H.G.
38.5	99.8	27.7	At5g03390	831852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.8	99.8	56.7	At1g07570	837271	APK1A	Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues	O.I.	C.G.	H.G.
37.3	99.7	252.9	At5g62740	836395	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
36.8	99.7	57.5	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.6	99.7	81.1	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
36.6	99.7	18.2	At5g42230	834228	scpl41 (serine carboxypeptidase-like 41)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
36.3	99.7	62.9	At5g14210	831271	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;PMOBFVA	O.I.	C.G.	H.G.
36.2	99.7	44.8	At3g60900	825261	FLA10	F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA	O.I.	C.G.	H.G.
35.7	99.7	48.4	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
35.6	99.7	125.7	At5g47370	834784	HAT2	homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.	O.I.	C.G.	H.G.
34.9	99.7	336.6	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
34.7	99.7	36.3	At4g24260	828527	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
34.7	99.7	27.5	At1g65000	842808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.6	99.7	37.6	At2g41550	818753	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
34.4	99.7	22.0	At3g59420	825111	ACR4 (ARABIDOPSIS CRINKLY4)	Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.	O.I.	C.G.	H.G.
33.4	99.7	86.9	At1g77000	844036	SKP2B	AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. AtSKP2b may also be involved in the degradation of KRP1/ICK1, a CDK inhibitor.	O.I.	C.G.	H.G.
33.4	99.7	32.1	At4g32170	829349	CYP96A2	member of CYP96A	O.I.	C.G.	H.G.
33.3	99.7	45.8	At5g06350	830523	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
33.1	99.7	123.6	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
33.0	99.7	151.4	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
32.7	99.7	24.0	At3g03590	821215	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMBFV	O.I.	C.G.	H.G.
32.5	99.7	96.5	At3g62630	825437	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA	O.I.	C.G.	H.G.
32.4	99.7	29.3	At4g11080	826709	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
32.3	99.7	6.5	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.

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GSM ID	GSM10477
Assay name	lec1-1 24-Hr Seed 1
GSE experiment	GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM10477 Assay name lec1-1 24-Hr Seed 1 GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

GSM ID GSM10477

Assay name lec1-1 24-Hr Seed 1

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants