Microarray experiments to specifically-expressed genes

GSM ID GSM10446
Assay name WT 24-Hr Seed 2
GSE experiment GSE680: Transcript Profiling of Arabidopsis Plant Life Cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
656.0100.099.8At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
355.3100.045.9At1g69100843242aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPBO.I.C.G.H.G.
315.1100.0206.6At5g21150832241PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
283.4100.0147.9At2g27880817334AGO5 (ARGONAUTE 5)F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
260.1100.066.1At5g58400835953peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
253.5100.0306.1At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMO.I.C.G.H.G.
232.4100.036.9At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
227.8100.052.6At5g23260832390TT16 (TRANSPARENT TESTA16)Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.O.I.C.G.H.G.
209.4100.0161.0At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.O.I.C.G.H.G.
193.2100.0116.0At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
184.9100.0133.1At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
181.7100.0145.2At4g21630828250subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
160.499.9136.9At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.O.I.C.G.H.G.
156.999.989.3At5g51810835256GA20OX2 (GIBBERELLIN 20 OXIDASE 2)Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.O.I.C.G.H.G.
154.699.9151.6At1g02190839541CER1 protein, putativeF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMVO.I.C.G.H.G.
141.099.999.6At5g07280830619EMS1 (EXCESS MICROSPOROCYTES1)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiationO.I.C.G.H.G.
126.799.953.9At5g61120836233-F:unknown;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
121.399.9679.3At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
119.399.950.0At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
118.299.9123.0At5g67110836846ALC (ALCATRAZ)encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.O.I.C.G.H.G.
116.299.925.0At3g04540819610-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
110.599.953.9At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
109.499.9101.0At1g51460841571ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
104.799.9108.8At5g02550831052unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
99.399.972.9At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
93.699.977.3At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
92.199.9342.8At5g24420832513glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
90.599.931.2At5g43510834371--O.I.C.G.H.G.
90.199.9126.7At1g24540839069CYP86C1member of CYP86CO.I.C.G.H.G.
88.699.9118.3At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
84.899.9611.3At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
84.899.9141.9At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
82.699.933.2At5g18000831667transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMFO.I.C.G.H.G.
80.199.931.8At1g52970841730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
79.499.9377.4At1g72970843628HTH (HOTHEAD)Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.O.I.C.G.H.G.
79.499.940.3At2g35310818098transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
76.799.925.9At2g45650819173AGL6 (AGAMOUS-LIKE 6)sequence suggests this encodes a MADS-box transcription factorO.I.C.G.H.G.
75.199.939.1At1g63480842654DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:unknown;PMFOBVO.I.C.G.H.G.
74.399.964.2At3g60900825261FLA10F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVAO.I.C.G.H.G.
71.099.9120.8At2g42830818883SHP2 (SHATTERPROOF 2)AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).O.I.C.G.H.G.
69.899.951.9At1g16705838241p300/CBP acetyltransferase-related protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
68.399.972.1At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
65.299.824.0At3g50870824251MNP (MONOPOLE)mutant has Embryo defect; GATA Factor Transcriptional RegulatorO.I.C.G.H.G.
61.399.837.1At5g15720831427GLIP7Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
61.199.8143.5At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
60.999.8207.6At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
59.399.816.6At5g51850835260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.C.G.H.G.
58.599.842.7At3g11000820271-F:unknown;P:unknown;C:endomembrane system;POBFMVO.I.C.G.H.G.
57.499.838.7At1g60060842300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBO.I.C.G.H.G.
57.399.833.8At5g03390831852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
57.099.850.3At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
56.899.822.0At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
54.899.838.7At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
53.799.831.8At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAO.I.C.G.H.G.
52.999.869.0At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
52.399.846.8At4g16447827342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.699.879.8At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.O.I.C.G.H.G.
49.899.8100.9At3g29810822697COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
48.699.820.3At1g45190841087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
48.399.877.3At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
48.199.8114.7At1g19330838515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
46.599.8146.1At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
46.599.835.2At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
45.299.885.2At3g06130819786heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVAO.I.C.G.H.G.
44.899.837.2At4g32170829349CYP96A2member of CYP96AO.I.C.G.H.G.
44.799.860.1At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).O.I.C.G.H.G.
44.699.852.6At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.
44.499.822.2At3g56610824828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
43.599.8108.2At4g24040828504TRE1 (TREHALASE 1)Encodes a trehalase, member of Glycoside Hydrolase Family 37.O.I.C.G.H.G.
42.299.818.5At1g23050838913hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVO.I.C.G.H.G.
41.599.852.1At3g11520820325CYCB1Encodes a B-type mitotic cyclin.O.I.C.G.H.G.
41.199.855.8At4g00750825923dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOO.I.C.G.H.G.
41.199.850.5At5g51480835222SKS2 (SKU5 SIMILAR 2)F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOAO.I.C.G.H.G.
40.499.8155.2At2g27040817246AGO4 (ARGONAUTE 4)AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.O.I.C.G.H.G.
40.199.840.5At2g41550818753transcription termination factorF:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
39.799.850.0At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
39.499.860.0At5g13840831230FZR3 (FIZZY-RELATED 3)F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
39.399.8259.6At5g62740836395band 7 family proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAVO.I.C.G.H.G.
39.299.844.7At1g03170839563unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
39.299.812.9At2g32790817840ubiquitin-conjugating enzyme, putativeF:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPVO.I.C.G.H.G.
37.999.8118.9At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
37.599.747.0At5g39220833918hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPAFO.I.C.G.H.G.
37.499.712.7At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
37.199.728.8At5g48650834922nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBAO.I.C.G.H.G.
36.299.7129.3At5g26850832743-F:unknown;P:biological_process unknown;C:chloroplast;MPFOO.I.C.G.H.G.
36.099.7172.2At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
36.099.725.7At1g51300841553acyl-protein thioesterase-relatedF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.C.G.H.G.
35.999.759.1At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.C.G.H.G.
35.899.7190.4At2g29550817504TUB7Encodes a beta-tubulin that is expressed in leaves, roots and flowers.O.I.C.G.H.G.
35.499.7103.5At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.O.I.C.G.H.G.
35.499.720.2At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
35.299.7100.8At4g36180829775leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
34.999.719.7At5g11360831007-F:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
34.699.721.7At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
34.199.717.2At5g45910834631GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOMO.I.C.G.H.G.
33.699.7127.8At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
33.399.735.0At1g05540837056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
33.099.7156.9At5g45670834606GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
32.899.722.0At1g48180841238unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.799.727.1At5g25470832621DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO.I.C.G.H.G.



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