Microarray experiments to specifically-expressed genes

GSM ID GSM10441
Assay name WT Ovule 1
GSE experiment GSE680: Transcript Profiling of Arabidopsis Plant Life Cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
700.0100.0108.5At5g58400835953peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
588.5100.059.1At1g69100843242aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPBO.I.C.G.H.G.
469.7100.0252.3At5g21150832241PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
459.4100.051.8At2g21655816704unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
349.3100.072.8At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
248.8100.0192.4At1g02190839541CER1 protein, putativeF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOPFMVO.I.C.G.H.G.
248.3100.056.0At1g52970841730unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
246.3100.0301.7At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMO.I.C.G.H.G.
241.2100.051.7At3g56610824828unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
224.4100.0159.3At5g02550831052unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
166.5100.042.3At5g43510834371--O.I.C.G.H.G.
157.799.9110.3At2g27880817334AGO5 (ARGONAUTE 5)F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
154.899.9767.3At1g72260843558THI2.1 (THIONIN 2.1)Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
154.799.927.9At5g22970832361unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
146.199.9134.5At4g21590828245ENDO3 (endonuclease 3)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.O.I.C.G.H.G.
142.899.9219.4At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
138.099.934.9At3g50870824251MNP (MONOPOLE)mutant has Embryo defect; GATA Factor Transcriptional RegulatorO.I.C.G.H.G.
137.299.934.5At5g45910834631GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOMO.I.C.G.H.G.
132.999.996.7At5g07280830619EMS1 (EXCESS MICROSPOROCYTES1)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiationO.I.C.G.H.G.
132.299.9410.8At5g24420832513glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
131.299.939.9At5g23260832390TT16 (TRANSPARENT TESTA16)Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule.O.I.C.G.H.G.
122.699.988.5At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
113.799.978.0At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
112.599.9103.9At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
111.299.988.0At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
110.899.948.2At3g04960819656-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
105.099.938.9At5g52975835376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
103.499.9109.5At4g21630828250subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
100.799.951.5At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
100.299.944.7At5g03390831852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
98.999.964.4At4g16447827342unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
95.599.955.8At5g34883833426unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
93.699.9642.1At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
90.999.9216.2At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.C.G.H.G.
88.299.949.0At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
86.299.991.6At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.C.G.H.G.
85.899.913.5At3g57840824953self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
85.299.943.8At5g15720831427GLIP7Contains lipase signature motif and GDSL domain.O.I.C.G.H.G.
82.699.929.1At1g26795839221self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
78.799.977.3At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
77.499.958.6At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
77.299.995.0At3g58780825047SHP1 (SHATTERPROOF 1)One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.O.I.C.G.H.G.
71.499.936.7At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAO.I.C.G.H.G.
70.899.917.5At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
70.199.9222.7At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
69.699.924.3At1g45190841087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
67.499.892.9At5g67110836846ALC (ALCATRAZ)encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.O.I.C.G.H.G.
66.199.872.3At5g67460836882glycosyl hydrolase family protein 17F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFMO.I.C.G.H.G.
64.499.8107.1At1g24540839069CYP86C1member of CYP86CO.I.C.G.H.G.
63.899.888.8At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
61.999.876.0At1g51460841571ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
61.699.837.5At5g61120836233-F:unknown;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
60.699.828.5At5g18000831667transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMFO.I.C.G.H.G.
59.899.839.9At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
59.199.854.8At5g51810835256GA20OX2 (GIBBERELLIN 20 OXIDASE 2)Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.O.I.C.G.H.G.
58.999.826.1At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
55.899.846.4At1g16705838241p300/CBP acetyltransferase-related protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.699.815.3At2g32790817840ubiquitin-conjugating enzyme, putativeF:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPVO.I.C.G.H.G.
52.799.8125.3At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.O.I.C.G.H.G.
51.699.868.1At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.899.852.6At3g60900825261FLA10F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVAO.I.C.G.H.G.
49.299.8116.0At1g19330838515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
47.499.825.3At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
47.299.887.0At3g06130819786heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVAO.I.C.G.H.G.
46.099.86.6At5g64720836593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
45.499.860.5At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).O.I.C.G.H.G.
45.299.881.0At4g22050828294aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPO.I.C.G.H.G.
45.299.847.4At3g17070820964peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
44.799.8380.6At1g52030841632MBP2 (MYROSINASE-BINDING PROTEIN 2)Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.O.I.C.G.H.G.
44.699.858.2At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
43.999.840.2At1g05540837056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
42.799.829.4At1g63480842654DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:unknown;PMFOBVO.I.C.G.H.G.
42.099.8138.9At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoO.I.C.G.H.G.
39.699.822.2At3g17080820965self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
39.499.896.8At4g09960826586STK (SEEDSTICK)a MADS box transcription factor expressed in the carpel and ovulesO.I.C.G.H.G.
39.399.868.1At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
39.199.8102.2At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
38.899.869.1At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.O.I.C.G.H.G.
38.399.871.2At5g47710834822C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MPFOO.I.C.G.H.G.
37.599.729.0At5g25470832621DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO.I.C.G.H.G.
37.499.7307.6At5g51750835249ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAMO.I.C.G.H.G.
37.199.763.1At2g35760818148integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.999.719.3At1g23420838950INO (INNER NO OUTER)Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.O.I.C.G.H.G.
36.999.716.6At5g42955834308unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
36.599.7164.4At2g02850814816ARPN (PLANTACYANIN)Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.O.I.C.G.H.G.
36.299.7116.3At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
36.299.727.2At2g35310818098transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
36.099.747.6At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
35.699.774.4At3g11600820333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
35.399.7331.7At5g48480834903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
35.199.739.1At1g32930840187galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
35.199.713.9At2g06200815176AtGRF6 (GROWTH-REGULATING FACTOR 6)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flowerO.I.C.G.H.G.
34.799.746.4At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.
34.499.727.8At5g48650834922nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBAO.I.C.G.H.G.
33.699.716.5At1g23050838913hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVO.I.C.G.H.G.
33.099.782.3At2g42830818883SHP2 (SHATTERPROOF 2)AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).O.I.C.G.H.G.
32.999.721.5At3g59420825111ACR4 (ARABIDOPSIS CRINKLY4)Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.O.I.C.G.H.G.
32.899.710.6At2g21740816711unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
32.499.7414.4At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
32.099.746.8At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.



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