CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM100440

Assay name Rice Azucena 0ppm Arsenate (Control) Rep2

GSE experiment GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
72.4 99.9 71.0 Os03g0734000 AK064264.1 - Conserved hypothetical protein 6e+0 At3g19660 unknown protein O.I. C.G. H.G.
45.8 99.9 4.2 Os01g0287400 AK058343.1 - Low-temperature induced protein lt101.2 3e-1 At4g28088 hydrophobic protein, putative / low temperature and salt responsive protein, putative O.I. C.G. H.G.
44.7 99.9 10.0 Os04g0186400 AF416722.1 - Phosphate transporter 6 5e-22 At2g32830 PHT5 O.I. C.G. H.G.
43.6 99.9 2.9 Os01g0602200 BQ906060 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 1e-1 At3g14690 CYP72A15 O.I. C.G. H.G.
41.3 99.9 11.4 Os07g0442800 AK103470.1 - Conserved hypothetical protein 3e+0 At4g04810 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein O.I. C.G. H.G.
39.5 99.9 32.2 Os10g0554200 AK105765.1 - Nitrate transporter 2e-2 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) O.I. C.G. H.G.
31.6 99.7 1.4 Os11g0305400 9639.m01877 - O-methyltransferase, family 2 protein 2e+0 At3g13630 unknown protein O.I. C.G. H.G.
30.9 99.7 4.1 Os05g0135000 AK109054.1 - - 6e-1 At5g51890 peroxidase O.I. C.G. H.G.
29.1 99.7 1.1 Os06g0692600 AK110462.1 - Protein kinase domain containing protein 3e-2 At1g72300 leucine-rich repeat transmembrane protein kinase, putative O.I. C.G. H.G.
27.1 99.6 0.8 Os08g0113900 AK062376.1 - Conserved hypothetical protein 5e+0 At4g24350 phosphorylase family protein O.I. C.G. H.G.
25.9 99.5 0.7 Os02g0542500 AK109859.1 - - 5e-2 At4g21450 vesicle-associated membrane family protein / VAMP family protein O.I. C.G. H.G.
23.9 99.4 2.7 Os03g0729600 AK063169.1 - Conserved hypothetical protein 8e-3 At5g22880 HTB2 O.I. C.G. H.G.
22.6 99.3 2.7 Os03g0564600 AK108950.1 - Protein of unknown function DUF26 domaincontaining protein 7e+0 At2g26120 glycine-rich protein O.I. C.G. H.G.
22.6 99.3 2.2 Os09g0394600 AK065379.1 - Endonuclease/exonuclease/phosphatase familyprotein 1e-2 At3g63240 endonuclease/exonuclease/phosphatase family protein O.I. C.G. H.G.
21.2 99.2 15.1 Os01g0371500 AK062937.1 - Glutathione-S-transferase 19E50 7e-3 At4g02520 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) O.I. C.G. H.G.
21.0 99.2 4.3 Os10g0328100 NM_195728.1 - Conserved hypothetical protein 2e-1 At2g23310 ATRER1C1 O.I. C.G. H.G.
21.0 99.2 0.1 Os04g0325300 AK071605.1 - Hypothetical protein 3e+0 At3g50373 unknown protein O.I. C.G. H.G.
20.9 99.2 1.1 Os12g0610800 AK063882.1 - Protein of unknown function DUF588 family protein 2e+0 At5g41900 hydrolase, alpha/beta fold family protein O.I. C.G. H.G.
20.5 99.1 26.4 Os12g0203200 AK063151.1 - Hypothetical protein 1e+0 At3g24750 unknown protein O.I. C.G. H.G.
19.9 99.1 15.4 Os01g0542700 AK110526.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 3e-2 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
72.4	99.9	71.0	Os03g0734000	AK064264.1	-	Conserved hypothetical protein	6e+0	At3g19660	unknown protein	O.I.	C.G.	H.G.
45.8	99.9	4.2	Os01g0287400	AK058343.1	-	Low-temperature induced protein lt101.2	3e-1	At4g28088	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	C.G.	H.G.
44.7	99.9	10.0	Os04g0186400	AF416722.1	-	Phosphate transporter 6	5e-22	At2g32830	PHT5	O.I.	C.G.	H.G.
43.6	99.9	2.9	Os01g0602200	BQ906060	-	Cytochrome P450 monooxygenase CYP72A5 (Fragment)	1e-1	At3g14690	CYP72A15	O.I.	C.G.	H.G.
41.3	99.9	11.4	Os07g0442800	AK103470.1	-	Conserved hypothetical protein	3e+0	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	C.G.	H.G.
39.5	99.9	32.2	Os10g0554200	AK105765.1	-	Nitrate transporter	2e-2	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	C.G.	H.G.
31.6	99.7	1.4	Os11g0305400	9639.m01877	-	O-methyltransferase, family 2 protein	2e+0	At3g13630	unknown protein	O.I.	C.G.	H.G.
30.9	99.7	4.1	Os05g0135000	AK109054.1	-	-	6e-1	At5g51890	peroxidase	O.I.	C.G.	H.G.
29.1	99.7	1.1	Os06g0692600	AK110462.1	-	Protein kinase domain containing protein	3e-2	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	O.I.	C.G.	H.G.
27.1	99.6	0.8	Os08g0113900	AK062376.1	-	Conserved hypothetical protein	5e+0	At4g24350	phosphorylase family protein	O.I.	C.G.	H.G.
25.9	99.5	0.7	Os02g0542500	AK109859.1	-	-	5e-2	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	C.G.	H.G.
23.9	99.4	2.7	Os03g0729600	AK063169.1	-	Conserved hypothetical protein	8e-3	At5g22880	HTB2	O.I.	C.G.	H.G.
22.6	99.3	2.7	Os03g0564600	AK108950.1	-	Protein of unknown function DUF26 domaincontaining protein	7e+0	At2g26120	glycine-rich protein	O.I.	C.G.	H.G.
22.6	99.3	2.2	Os09g0394600	AK065379.1	-	Endonuclease/exonuclease/phosphatase familyprotein	1e-2	At3g63240	endonuclease/exonuclease/phosphatase family protein	O.I.	C.G.	H.G.
21.2	99.2	15.1	Os01g0371500	AK062937.1	-	Glutathione-S-transferase 19E50	7e-3	At4g02520	ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)	O.I.	C.G.	H.G.
21.0	99.2	4.3	Os10g0328100	NM_195728.1	-	Conserved hypothetical protein	2e-1	At2g23310	ATRER1C1	O.I.	C.G.	H.G.
21.0	99.2	0.1	Os04g0325300	AK071605.1	-	Hypothetical protein	3e+0	At3g50373	unknown protein	O.I.	C.G.	H.G.
20.9	99.2	1.1	Os12g0610800	AK063882.1	-	Protein of unknown function DUF588 family protein	2e+0	At5g41900	hydrolase, alpha/beta fold family protein	O.I.	C.G.	H.G.
20.5	99.1	26.4	Os12g0203200	AK063151.1	-	Hypothetical protein	1e+0	At3g24750	unknown protein	O.I.	C.G.	H.G.
19.9	99.1	15.4	Os01g0542700	AK110526.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	3e-2	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	C.G.	H.G.

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GSM ID	GSM100440
Assay name	Rice Azucena 0ppm Arsenate (Control) Rep2
GSE experiment	GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Microarray experiments to specifically-expressed genes

GSM ID GSM100440 Assay name Rice Azucena 0ppm Arsenate (Control) Rep2 GSE experiment GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

GSM ID GSM100440

Assay name Rice Azucena 0ppm Arsenate (Control) Rep2

GSE experiment GSE4471: Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate