CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name Evans_2-4_fab1-mut-cold_ATH1

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
159.4 99.9 68.2 At5g54470 835535 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM O.I. C.G. H.G.
103.4 99.9 180.9 At4g25480 828652 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. O.I. C.G. H.G.
80.5 99.9 25.4 At2g36750 818247 UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1) F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF O.I. C.G. H.G.
67.6 99.9 58.8 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.4 99.8 125.3 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. O.I. C.G. H.G.
55.6 99.8 57.5 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.0 99.8 217.4 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
47.9 99.8 23.0 At3g24460 822036 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:unknown;P:unknown;C:membrane;MFPO O.I. C.G. H.G.
45.2 99.8 27.9 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
45.1 99.8 70.3 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
42.0 99.8 70.1 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
41.9 99.8 45.5 At1g06180 837127 ATMYB13 (MYB DOMAIN PROTEIN 13) member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
41.6 99.8 131.8 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
41.1 99.8 78.0 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
40.6 99.8 122.5 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
38.2 99.8 393.2 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
38.1 99.8 17.5 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
33.8 99.7 59.8 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. C.G. H.G.
33.3 99.7 46.8 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. O.I. C.G. H.G.
33.2 99.7 162.2 At1g06430 837154 FTSH8 encodes a FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
32.9 99.7 136.3 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
31.9 99.7 65.4 At1g49720 841395 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1) Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. O.I. C.G. H.G.
31.9 99.7 54.0 At3g05800 819749 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;P O.I. C.G. H.G.
31.6 99.7 72.0 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
30.3 99.7 20.5 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
29.8 99.7 87.6 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
29.8 99.7 49.1 At2g46670 819279 pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
29.7 99.7 113.1 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.9 99.7 19.0 At3g30460 822758 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
28.6 99.7 129.7 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. O.I. C.G. H.G.
28.1 99.7 217.0 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
27.4 99.7 47.9 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
26.9 99.7 61.1 At1g70420 843378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
26.8 99.7 65.4 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
25.6 99.7 47.0 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
25.2 99.6 72.4 At4g32190 829352 centromeric protein-related F:unknown;P:unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
25.2 99.6 58.1 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
24.5 99.6 50.8 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
24.3 99.6 60.9 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
24.1 99.6 44.9 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
23.9 99.6 105.0 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
23.7 99.6 71.8 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
22.4 99.6 223.2 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
22.4 99.6 101.1 At4g25470 828651 CBF2 (C-REPEAT/DRE BINDING FACTOR 2) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. O.I. C.G. H.G.
21.8 99.6 130.1 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
21.8 99.6 93.5 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
21.7 99.6 280.6 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem O.I. C.G. H.G.
21.6 99.6 54.9 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
21.4 99.6 21.6 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
20.8 99.6 44.5 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
20.4 99.6 182.2 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
20.1 99.6 152.0 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
20.1 99.6 106.9 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
19.0 99.5 57.7 At1g18660 838447 zinc finger (C3HC4-type RING finger) family protein F:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVA O.I. C.G. H.G.
18.8 99.5 48.7 At5g50450 835113 zinc finger (MYND type) family protein F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
18.6 99.5 193.5 At5g43260 834344 chaperone protein dnaJ-related F:unknown;P:unknown;C:unknown;PBOM O.I. C.G. H.G.
18.5 99.5 92.7 At1g78600 844196 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM O.I. C.G. H.G.
18.3 99.5 41.4 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
18.1 99.5 13.9 At4g16880 827396 disease resistance protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM O.I. C.G. H.G.
17.8 99.5 95.2 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
17.6 99.5 135.1 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
17.6 99.5 55.6 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
17.4 99.5 81.8 At3g14770 820705 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
17.2 99.5 113.1 At3g21560 821710 UGT84A2 Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). O.I. C.G. H.G.
17.2 99.5 18.2 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
17.0 99.5 69.6 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
16.8 99.5 108.0 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB O.I. C.G. H.G.
16.8 99.5 59.8 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
16.7 99.5 217.9 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
16.4 99.5 47.4 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
16.4 99.5 17.4 At1g01420 837503 UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
15.9 99.5 62.4 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
15.9 99.5 47.0 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
15.9 99.5 43.0 At1g48650 841287 helicase domain-containing protein F:in 6 functions;P:unknown;C:intracellular;BMOFPVA O.I. C.G. H.G.
15.4 99.5 46.4 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. O.I. C.G. H.G.
15.3 99.4 57.9 At1g33110 840207 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
15.3 99.4 27.6 At1g18810 838463 phytochrome kinase substrate-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
15.3 99.4 27.3 At4g38960 830051 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
15.0 99.4 48.4 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
14.6 99.4 115.9 At3g14690 820697 CYP72A15 putative cytochrome P450 O.I. C.G. H.G.
14.6 99.4 42.0 At4g15490 827221 UGT84A3 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
14.4 99.4 124.0 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
14.4 99.4 45.8 At4g31390 829266 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBPMFAV O.I. C.G. H.G.
14.2 99.4 40.4 At5g62430 836364 CDF1 (CYCLING DOF FACTOR 1) Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon. O.I. C.G. H.G.
13.5 99.4 147.2 At1g22850 838890 - F:unknown;P:biological_process unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
13.3 99.4 224.2 At5g49480 835008 ATCP1 (Ca2+-binding protein 1) AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. O.I. C.G. H.G.
13.1 99.4 31.0 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
13.0 99.4 11.2 At1g66840 843002 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
12.8 99.3 44.2 At4g34740 829626 ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. O.I. C.G. H.G.
12.7 99.3 34.2 At3g21760 821730 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
12.3 99.3 86.9 At3g17510 821016 CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2. O.I. C.G. H.G.
12.3 99.3 49.7 At3g29200 822573 CM1 (CHORISMATE MUTASE 1) L-ascorbate peroxidase O.I. C.G. H.G.
12.0 99.3 55.5 At1g08650 837387 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE) Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. O.I. C.G. H.G.
11.9 99.3 235.6 At3g53260 824493 PAL2 Encodes phenylalanine lyase. O.I. C.G. H.G.
11.9 99.3 51.1 At5g24380 832509 YSL2 (YELLOW STRIPE LIKE 2) closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 O.I. C.G. H.G.
11.7 99.3 43.6 At3g21390 821693 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
11.5 99.3 107.4 At4g04840 825821 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
11.5 99.3 41.3 At2g46340 819242 SPA1 (SUPPRESSOR OF PHYA-105 1) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. O.I. C.G. H.G.
11.5 99.3 14.9 At4g13800 827014 permease-related F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB O.I. C.G. H.G.
11.4 99.3 15.2 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
159.4	99.9	68.2	At5g54470	835535	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM	O.I.	C.G.	H.G.
103.4	99.9	180.9	At4g25480	828652	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	O.I.	C.G.	H.G.
80.5	99.9	25.4	At2g36750	818247	UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)	F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF	O.I.	C.G.	H.G.
67.6	99.9	58.8	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.4	99.8	125.3	At5g24470	832518	APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.	O.I.	C.G.	H.G.
55.6	99.8	57.5	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.0	99.8	217.4	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
47.9	99.8	23.0	At3g24460	822036	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:unknown;P:unknown;C:membrane;MFPO	O.I.	C.G.	H.G.
45.2	99.8	27.9	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
45.1	99.8	70.3	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
42.0	99.8	70.1	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
41.9	99.8	45.5	At1g06180	837127	ATMYB13 (MYB DOMAIN PROTEIN 13)	member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
41.6	99.8	131.8	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
41.1	99.8	78.0	At5g23730	832438	nucleotide binding	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
40.6	99.8	122.5	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
38.2	99.8	393.2	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
38.1	99.8	17.5	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
33.8	99.7	59.8	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	C.G.	H.G.
33.3	99.7	46.8	At3g09650	820122	HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	O.I.	C.G.	H.G.
33.2	99.7	162.2	At1g06430	837154	FTSH8	encodes a FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
32.9	99.7	136.3	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
31.9	99.7	65.4	At1g49720	841395	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)	Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.	O.I.	C.G.	H.G.
31.9	99.7	54.0	At3g05800	819749	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;P	O.I.	C.G.	H.G.
31.6	99.7	72.0	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
30.3	99.7	20.5	At1g78440	844180	ATGA2OX1 (gibberellin 2-oxidase 1)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
29.8	99.7	87.6	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
29.8	99.7	49.1	At2g46670	819279	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
29.7	99.7	113.1	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.9	99.7	19.0	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
28.6	99.7	129.7	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	O.I.	C.G.	H.G.
28.1	99.7	217.0	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
27.4	99.7	47.9	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
26.9	99.7	61.1	At1g70420	843378	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
26.8	99.7	65.4	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
25.6	99.7	47.0	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
25.2	99.6	72.4	At4g32190	829352	centromeric protein-related	F:unknown;P:unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
25.2	99.6	58.1	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
24.5	99.6	50.8	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
24.3	99.6	60.9	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
24.1	99.6	44.9	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
23.9	99.6	105.0	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
23.7	99.6	71.8	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
22.4	99.6	223.2	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
22.4	99.6	101.1	At4g25470	828651	CBF2 (C-REPEAT/DRE BINDING FACTOR 2)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.	O.I.	C.G.	H.G.
21.8	99.6	130.1	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
21.8	99.6	93.5	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
21.7	99.6	280.6	At3g17800	821048	-	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	O.I.	C.G.	H.G.
21.6	99.6	54.9	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
21.4	99.6	21.6	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
20.8	99.6	44.5	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
20.4	99.6	182.2	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
20.1	99.6	152.0	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
20.1	99.6	106.9	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
19.0	99.5	57.7	At1g18660	838447	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
18.8	99.5	48.7	At5g50450	835113	zinc finger (MYND type) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
18.6	99.5	193.5	At5g43260	834344	chaperone protein dnaJ-related	F:unknown;P:unknown;C:unknown;PBOM	O.I.	C.G.	H.G.
18.5	99.5	92.7	At1g78600	844196	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM	O.I.	C.G.	H.G.
18.3	99.5	41.4	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
18.1	99.5	13.9	At4g16880	827396	disease resistance protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
17.8	99.5	95.2	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
17.6	99.5	135.1	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
17.6	99.5	55.6	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
17.4	99.5	81.8	At3g14770	820705	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
17.2	99.5	113.1	At3g21560	821710	UGT84A2	Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).	O.I.	C.G.	H.G.
17.2	99.5	18.2	At3g55580	824723	regulator of chromosome condensation (RCC1) family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
17.0	99.5	69.6	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
16.8	99.5	108.0	At1g66330	842950	senescence-associated family protein	F:unknown;P:senescence;C:unknown;PB	O.I.	C.G.	H.G.
16.8	99.5	59.8	At2g24540	816990	AFR (ATTENUATED FAR-RED RESPONSE)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
16.7	99.5	217.9	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
16.4	99.5	47.4	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
16.4	99.5	17.4	At1g01420	837503	UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
15.9	99.5	62.4	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
15.9	99.5	47.0	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
15.9	99.5	43.0	At1g48650	841287	helicase domain-containing protein	F:in 6 functions;P:unknown;C:intracellular;BMOFPVA	O.I.	C.G.	H.G.
15.4	99.5	46.4	At5g57180	835824	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	O.I.	C.G.	H.G.
15.3	99.4	57.9	At1g33110	840207	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
15.3	99.4	27.6	At1g18810	838463	phytochrome kinase substrate-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
15.3	99.4	27.3	At4g38960	830051	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
15.0	99.4	48.4	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
14.6	99.4	115.9	At3g14690	820697	CYP72A15	putative cytochrome P450	O.I.	C.G.	H.G.
14.6	99.4	42.0	At4g15490	827221	UGT84A3	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
14.4	99.4	124.0	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
14.4	99.4	45.8	At4g31390	829266	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBPMFAV	O.I.	C.G.	H.G.
14.2	99.4	40.4	At5g62430	836364	CDF1 (CYCLING DOF FACTOR 1)	Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.	O.I.	C.G.	H.G.
13.5	99.4	147.2	At1g22850	838890	-	F:unknown;P:biological_process unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
13.3	99.4	224.2	At5g49480	835008	ATCP1 (Ca2+-binding protein 1)	AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.	O.I.	C.G.	H.G.
13.1	99.4	31.0	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
13.0	99.4	11.2	At1g66840	843002	-	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
12.8	99.3	44.2	At4g34740	829626	ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2)	Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.	O.I.	C.G.	H.G.
12.7	99.3	34.2	At3g21760	821730	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
12.3	99.3	86.9	At3g17510	821016	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)	Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.	O.I.	C.G.	H.G.
12.3	99.3	49.7	At3g29200	822573	CM1 (CHORISMATE MUTASE 1)	L-ascorbate peroxidase	O.I.	C.G.	H.G.
12.0	99.3	55.5	At1g08650	837387	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light.	O.I.	C.G.	H.G.
11.9	99.3	235.6	At3g53260	824493	PAL2	Encodes phenylalanine lyase.	O.I.	C.G.	H.G.
11.9	99.3	51.1	At5g24380	832509	YSL2 (YELLOW STRIPE LIKE 2)	closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1	O.I.	C.G.	H.G.
11.7	99.3	43.6	At3g21390	821693	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
11.5	99.3	107.4	At4g04840	825821	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
11.5	99.3	41.3	At2g46340	819242	SPA1 (SUPPRESSOR OF PHYA-105 1)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.	O.I.	C.G.	H.G.
11.5	99.3	14.9	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
11.4	99.3	15.2	At3g56260	824792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	Evans_2-4_fab1-mut-cold_ATH1
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name Evans_2-4_fab1-mut-cold_ATH1 GSE experiment -

GSM ID -

Assay name Evans_2-4_fab1-mut-cold_ATH1

GSE experiment -