Microarray experiments to specifically-expressed genes

Assay name E-TABM-62-raw-cel-720983322
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
69.499.9107.5At1g67980843126CCoAMTEncodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.O.I.C.G.H.G.
36.599.739.8At1g57650842141-F:unknown;P:defense response;C:cellular_component unknown;PMBOFAVO.I.C.G.H.G.
35.799.746.0At4g11000826701ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
32.099.744.3At2g04070814943antiporter/ drug transporter/ transporterF:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
29.299.766.1At2g29470817496ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
28.199.723.8At5g62770836398unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFO.I.C.G.H.G.
26.599.7211.7At1g03850839392glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:response to cytokinin stimulus;C:unknown;PFBO.I.C.G.H.G.
26.099.7136.7At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
22.999.619.0At1g66860843004hydrolaseF:hydrolase activity;P:glutamine metabolic process, N-terminal protein myristoylation;C:cellular_component unknown;BOPAFO.I.C.G.H.G.
19.199.6159.4At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
18.599.569.8At2g31945817753unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.299.5238.2At5g44420834469PDF1.2Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
18.099.510.1At3g21780821732UGT71B6 (UDP-glucosyl transferase 71B6)Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.O.I.C.G.H.G.
17.899.5146.9At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
17.599.5196.6At5g24210832488lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POO.I.C.G.H.G.
17.499.523.2At3g57770824946protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
16.799.5251.4At2g15130816001plant basic secretory protein (BSP) family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PFBOO.I.C.G.H.G.
15.399.455.5At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.C.G.H.G.
14.399.427.2At1g34180840317anac016 (Arabidopsis NAC domain containing protein 16)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.49.9At3g30360822737transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.099.4104.8At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
13.999.424.6At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
13.799.4125.3At3g18250821353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
13.699.492.6At5g434508343652-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.C.G.H.G.
13.599.452.9At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
12.999.3102.1At2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
12.999.343.9At2g38790818461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
12.799.322.8At3g26220822223CYP71B3cytochrome P450 monooxygenaseO.I.C.G.H.G.
12.399.369.3At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
12.399.337.5At2g24240816958potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOFO.I.C.G.H.G.
12.299.344.3At1g09240837444NAS3 (NICOTIANAMINE SYNTHASE 3)Encodes a nicotianamine synthase.O.I.C.G.H.G.
12.199.3331.3At5g03350831863legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBOO.I.C.G.H.G.
12.199.3211.6At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
12.199.3101.0At2g43820818986UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. UGT74F2 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques.O.I.C.G.H.G.
11.999.349.4At2g18680816383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
11.899.315.7At1g69720843308ho3 (HEME OXYGENASE 3)Encodes a member (HO3) of the heme oxygenase family.O.I.C.G.H.G.
11.799.324.9At3g17700821037CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1)cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.O.I.C.G.H.G.
11.699.399.0At1g22890838896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.699.352.7At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.O.I.C.G.H.G.
11.599.34.6At1g47920841210syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.199.2110.3At1g52890841722ANAC019 (Arabidopsis NAC domain containing protein 19)encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.O.I.C.G.H.G.
10.799.2269.5At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
10.799.243.6At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
10.699.216.6At1g67520843073lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.599.2146.5At2g18700816385ATTPS11Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
10.399.218.0At1g33720840263CYP76C6member of CYP76CO.I.C.G.H.G.
10.399.217.5At1g02390839558GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2)Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
10.299.2315.8At2g14560815943LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.O.I.C.G.H.G. transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G. transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAMO.I.C.G.H.G.
9.999.175.7At1g65190842826protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVO.I.C.G.H.G.
9.999.149.5At4g26070828713MEK1 (MAP KINASE/ ERK KINASE 1)Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.O.I.C.G.H.G.
9.999.139.7At4g37150829869MES9 (METHYL ESTERASE 9)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
9.899.129.3At1g13700837931glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:cellular_component unknown;BOFMPO.I.C.G.H.G.
9.799.134.3At1g74590843799GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
9.799.18.6At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMO.I.C.G.H.G.
9.699.18.6At3g01080821213WRKY58member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
9.599.192.3At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.O.I.C.G.H.G.
9.599.168.4At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.C.G.H.G.
9.499.16.3At4g18990827635xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOAO.I.C.G.H.G.
9.399.140.7At1g23850838996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.299.1334.3At5g20230832145ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)Al-stress-induced geneO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G. (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.O.I.C.G.H.G. (CYTOCHROME P450 89A2)Encodes cytochrome P450 (CYP89A2).O.I.C.G.H.G. efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;PBOFMO.I.C.G.H.G.
8.999.0129.0At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.O.I.C.G.H.G.
8.999.0126.8At3g49780824140ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.O.I.C.G.H.G.
8.999.091.6At5g27350832794SFP1Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.O.I.C.G.H.G.
8.999.047.6At1g215253766777-pseudogene of unknown proteinO.I.C.G.H.G.
8.999.041.7At1g70520843389protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
8.899.0101.0At1g20630838652CAT1 (CATALASE 1)Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.O.I.C.G.H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage