CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-62-raw-cel-720981923

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
29.1 99.7 74.0 At4g37240 829878 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
25.8 99.7 176.2 At5g61660 836288 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
24.6 99.6 182.5 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
23.9 99.6 12.8 At3g30360 822737 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.3 99.6 172.6 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds O.I. C.G. H.G.
20.9 99.6 280.5 At3g62420 825415 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene. O.I. C.G. H.G.
18.0 99.5 40.4 At4g35320 829686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.0 99.4 304.5 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB O.I. C.G. H.G.
14.0 99.4 72.5 At3g46940 823847 deoxyuridine 5'-triphosphate nucleotidohydrolase family F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA O.I. C.G. H.G.
13.0 99.4 44.8 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.3 99.3 118.1 At2g17230 816228 EXL5 (EXORDIUM LIKE 5) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
12.3 99.3 46.4 At1g04240 839570 SHY2 (SHORT HYPOCOTYL 2) SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. O.I. C.G. H.G.
12.0 99.3 22.0 At3g62950 825470 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO O.I. C.G. H.G.
12.0 99.3 17.1 At1g49780 841401 PUB26 (PLANT U-BOX 26) F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBF O.I. C.G. H.G.
11.2 99.2 66.4 At3g06070 819780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
10.9 99.2 175.6 At4g15800 827260 RALFL33 (ralf-like 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
10.7 99.2 65.3 At1g21910 838793 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
10.7 99.2 46.7 At5g40500 834048 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
10.6 99.2 95.1 At5g08330 830730 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB O.I. C.G. H.G.
10.5 99.2 74.6 At5g51540 835228 metalloendopeptidase F:metalloendopeptidase activity;P:proteolysis;C:chloroplast thylakoid membrane, chloroplast;BOFMPA O.I. C.G. H.G.
10.4 99.2 97.2 At4g34290 829579 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFV O.I. C.G. H.G.
10.3 99.2 19.8 At3g21950 821753 methyltransferase F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF O.I. C.G. H.G.
10.2 99.2 34.6 At5g08350 830733 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.1 99.2 12.0 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
9.8 99.1 163.2 At2g20670 816595 unknown protein F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
9.8 99.1 32.9 At3g47560 823910 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;OBPFAM O.I. C.G. H.G.
9.8 99.1 19.2 At1g49980 841422 DNA-directed DNA polymerase/ damaged DNA binding F:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAP O.I. C.G. H.G.
9.3 99.1 178.6 At5g61590 836280 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
9.3 99.1 67.2 At1g52590 841691 - F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP O.I. C.G. H.G.
9.3 99.1 17.2 At5g25180 832589 CYP71B14 putative cytochrome P450 O.I. C.G. H.G.
9.2 99.1 155.2 At3g07470 819935 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PO O.I. C.G. H.G.
9.2 99.1 85.7 At5g56600 835761 PRF3 (PROFILIN 3) Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. O.I. C.G. H.G.
8.9 99.0 15.7 At1g34570 840360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
8.8 99.0 48.0 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
8.8 99.0 10.0 At3g11110 820282 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
8.6 99.0 328.7 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
29.1	99.7	74.0	At4g37240	829878	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.8	99.7	176.2	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
24.6	99.6	182.5	At4g03060	828102	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
23.9	99.6	12.8	At3g30360	822737	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.3	99.6	172.6	At1g35140	840399	PHI-1 (PHOSPHATE-INDUCED 1)	At1g35140 (At1g35140/T32G9_32) mRNA, complete cds	O.I.	C.G.	H.G.
20.9	99.6	280.5	At3g62420	825415	ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53)	Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.	O.I.	C.G.	H.G.
18.0	99.5	40.4	At4g35320	829686	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.0	99.4	304.5	At4g08950	826473	EXO (EXORDIUM)	F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB	O.I.	C.G.	H.G.
14.0	99.4	72.5	At3g46940	823847	deoxyuridine 5'-triphosphate nucleotidohydrolase family	F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA	O.I.	C.G.	H.G.
13.0	99.4	44.8	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.3	99.3	118.1	At2g17230	816228	EXL5 (EXORDIUM LIKE 5)	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
12.3	99.3	46.4	At1g04240	839570	SHY2 (SHORT HYPOCOTYL 2)	SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.	O.I.	C.G.	H.G.
12.0	99.3	22.0	At3g62950	825470	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO	O.I.	C.G.	H.G.
12.0	99.3	17.1	At1g49780	841401	PUB26 (PLANT U-BOX 26)	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBF	O.I.	C.G.	H.G.
11.2	99.2	66.4	At3g06070	819780	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
10.9	99.2	175.6	At4g15800	827260	RALFL33 (ralf-like 33)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
10.7	99.2	65.3	At1g21910	838793	AP2 domain-containing transcription factor family protein	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
10.7	99.2	46.7	At5g40500	834048	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
10.6	99.2	95.1	At5g08330	830730	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
10.5	99.2	74.6	At5g51540	835228	metalloendopeptidase	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast thylakoid membrane, chloroplast;BOFMPA	O.I.	C.G.	H.G.
10.4	99.2	97.2	At4g34290	829579	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFV	O.I.	C.G.	H.G.
10.3	99.2	19.8	At3g21950	821753	methyltransferase	F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
10.2	99.2	34.6	At5g08350	830733	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.1	99.2	12.0	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
9.8	99.1	163.2	At2g20670	816595	unknown protein	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
9.8	99.1	32.9	At3g47560	823910	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;OBPFAM	O.I.	C.G.	H.G.
9.8	99.1	19.2	At1g49980	841422	DNA-directed DNA polymerase/ damaged DNA binding	F:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAP	O.I.	C.G.	H.G.
9.3	99.1	178.6	At5g61590	836280	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
9.3	99.1	67.2	At1g52590	841691	-	F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP	O.I.	C.G.	H.G.
9.3	99.1	17.2	At5g25180	832589	CYP71B14	putative cytochrome P450	O.I.	C.G.	H.G.
9.2	99.1	155.2	At3g07470	819935	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;PO	O.I.	C.G.	H.G.
9.2	99.1	85.7	At5g56600	835761	PRF3 (PROFILIN 3)	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.	O.I.	C.G.	H.G.
8.9	99.0	15.7	At1g34570	840360	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
8.8	99.0	48.0	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
8.8	99.0	10.0	At3g11110	820282	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
8.6	99.0	328.7	At5g57560	835860	TCH4 (Touch 4)	Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-62-raw-cel-720981923
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-62-raw-cel-720981923 GSE experiment -

GSM ID -

Assay name E-TABM-62-raw-cel-720981923

GSE experiment -